Wall clock time and date at job start Mon Mar 30 2020 18:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46867 * 261.31009 * 3 2 1 5 5 C 1.37105 * 119.99965 * 262.33240 * 4 3 2 6 6 H 1.08002 * 119.99907 * 203.01897 * 5 4 3 7 7 C 1.38956 * 119.99692 * 23.29577 * 5 4 3 8 8 N 1.31403 * 120.00052 * 15.67778 * 7 5 4 9 9 Si 1.86798 * 119.99608 * 195.67735 * 7 5 4 10 10 H 1.48505 * 109.47420 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47248 * 120.00116 * 9 7 5 12 12 H 1.48508 * 109.46969 * 240.00195 * 9 7 5 13 13 C 1.34772 * 120.00083 * 82.33871 * 4 3 2 14 14 O 1.21289 * 120.00217 * 174.01464 * 13 4 3 15 15 C 1.50696 * 119.99950 * 354.00732 * 13 4 3 16 16 H 1.08998 * 110.43828 * 28.51686 * 15 13 4 17 17 C 1.54816 * 110.49046 * 265.97105 * 15 13 4 18 18 C 1.55225 * 101.98562 * 220.51853 * 17 15 13 19 19 O 1.44374 * 103.56692 * 36.88231 * 18 17 15 20 20 C 1.43739 * 106.97424 * 320.00763 * 19 18 17 21 21 H 1.08999 * 109.87725 * 145.94539 * 20 19 18 22 22 C 1.50703 * 109.88228 * 267.09111 * 20 19 18 23 23 C 1.30996 * 120.00096 * 237.83701 * 22 20 19 24 24 H 4.40638 * 5.51472 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.46790 * 141.31354 * 3 2 1 26 26 H 1.08993 * 109.47429 * 21.31291 * 3 2 1 27 27 H 0.97003 * 120.00178 * 180.02562 * 8 7 5 28 28 H 1.09002 * 110.90256 * 338.64270 * 17 15 13 29 29 H 1.08997 * 110.90937 * 102.24224 * 17 15 13 30 30 H 1.08994 * 110.52049 * 278.37975 * 18 17 15 31 31 H 1.09003 * 110.77255 * 155.50564 * 18 17 15 32 32 H 1.08004 * 119.99860 * 57.82956 * 22 20 19 33 33 H 1.08004 * 119.99921 * 179.97438 * 23 22 20 34 34 H 1.08004 * 120.00442 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2096 1.3654 5 6 3.5115 1.4627 1.7743 6 1 4.1963 1.5773 2.6015 7 6 3.0082 2.5852 1.1281 8 7 1.9566 2.4777 0.3476 9 14 3.8267 4.2469 1.3691 10 1 4.9836 4.1002 2.2885 11 1 4.2988 4.7609 0.0584 12 1 2.8486 5.2006 1.9516 13 6 3.2125 -0.8300 2.2195 14 8 3.7171 -0.6804 3.3123 15 6 2.6732 -2.1783 1.8168 16 1 2.7265 -2.3020 0.7352 17 6 1.2157 -2.3484 2.3103 18 6 1.2085 -3.8240 2.7920 19 8 2.5179 -3.9962 3.3754 20 6 3.4495 -3.3040 2.5273 21 1 4.2524 -2.8779 3.1289 22 6 4.0194 -4.2560 1.5076 23 6 5.3141 -4.4426 1.4375 24 1 -1.0501 0.0002 -0.0001 25 1 3.0089 0.8030 -0.6423 26 1 3.0098 -0.9565 -0.3735 27 1 1.6055 3.2612 -0.1038 28 1 1.0028 -1.6690 3.1357 29 1 0.5088 -2.2000 1.4941 30 1 1.0721 -4.5006 1.9484 31 1 0.4313 -3.9829 3.5395 32 1 3.3604 -4.7847 0.8347 33 1 5.7226 -5.1252 0.7069 34 1 5.9732 -3.9138 2.1101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491252979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:18 Heat of formation + Delta-G solvation = 11.746244 kcal Electronic energy + Delta-G solvation = -18641.550694 eV Core-core repulsion = 15735.516946 eV Total energy + Delta-G solvation = -2906.033748 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87949 -37.86540 -35.17261 -33.51618 -32.44772 -31.38470 -31.17017 -28.24583 -26.49073 -24.94588 -22.94241 -21.71588 -19.70114 -18.82365 -17.88109 -16.82393 -16.49083 -16.06502 -15.44604 -14.96491 -14.39089 -14.17688 -13.80088 -13.51660 -12.95438 -12.71197 -12.37471 -12.22622 -11.73298 -11.68230 -11.32260 -11.11268 -10.99182 -10.94872 -10.59724 -10.45861 -10.30691 -9.45617 -9.38804 -9.30642 -9.22274 -8.91755 -8.40438 -7.84687 -6.34179 -3.93834 2.35590 3.11767 3.23764 3.30201 3.63458 3.80567 4.01380 4.15229 4.37323 4.68939 4.95024 5.02997 5.15474 5.30594 5.35490 5.41997 5.43395 5.59252 5.78048 5.84251 5.95313 6.02958 6.15637 6.30272 6.38173 6.47971 6.69386 6.71985 6.92595 6.98698 7.19716 7.53289 8.04750 8.39466 8.76934 9.09819 9.31250 9.86322 10.66455 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.007541 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.301563 B = 3712.039909 C = 4136.975452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.109 4.109 3 C 0.232 3.768 4 N -0.438 5.438 5 C -0.314 4.314 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.866 5.866 9 Si 0.923 3.077 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.464 3.536 14 O -0.577 6.577 15 C -0.128 4.128 16 H 0.092 0.908 17 C -0.133 4.133 18 C 0.046 3.954 19 O -0.365 6.365 20 C 0.116 3.884 21 H 0.112 0.888 22 C -0.170 4.170 23 C -0.178 4.178 24 H 0.198 0.802 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.268 0.732 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -9.329 -3.479 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.110 4.110 3 C 0.109 3.891 4 N -0.156 5.156 5 C -0.442 4.442 6 H 0.120 0.880 7 C -0.173 4.173 8 N -0.504 5.504 9 Si 0.750 3.250 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.252 3.748 14 O -0.460 6.460 15 C -0.150 4.150 16 H 0.110 0.890 17 C -0.171 4.171 18 C -0.031 4.031 19 O -0.284 6.284 20 C 0.058 3.942 21 H 0.130 0.870 22 C -0.188 4.188 23 C -0.214 4.214 24 H 0.215 0.785 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.711 -9.197 -2.863 9.658 hybrid contribution -0.236 1.154 -0.421 1.251 sum -0.946 -8.043 -3.285 8.739 Atomic orbital electron populations 1.24226 0.95307 1.06541 1.02060 1.23136 0.94274 0.95190 0.98418 1.18269 0.84370 1.00063 0.86444 1.43633 1.55722 1.07600 1.08689 1.19705 1.25538 0.80625 1.18293 0.87953 1.25348 0.95017 0.99701 0.97209 1.70014 1.19457 1.30603 1.30359 0.85910 0.79377 0.81559 0.78156 1.19210 1.20638 1.20849 1.19763 0.84287 0.85688 0.85055 1.90527 1.48548 1.84477 1.22467 1.22588 0.96089 0.94944 1.01407 0.88977 1.23060 0.95013 0.96874 1.02146 1.23591 0.86319 0.95311 0.97844 1.88908 1.16433 1.74732 1.48318 1.21842 0.93054 0.88883 0.90410 0.87042 1.23389 0.97072 0.99284 0.99072 1.23848 0.96112 1.00313 1.01176 0.78455 0.87251 0.92164 0.92188 0.90133 0.89652 0.92569 0.89205 0.87448 0.88385 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.15 18.56 29.55 0.55 -4.60 16 2 C -0.11 -2.32 10.21 -37.12 -0.38 -2.70 16 3 C 0.23 5.01 4.82 -6.83 -0.03 4.98 16 4 N -0.44 -10.90 2.60 -117.94 -0.31 -11.21 16 5 C -0.31 -8.54 9.28 -14.93 -0.14 -8.68 16 6 H 0.10 2.94 7.40 -52.49 -0.39 2.55 16 7 C 0.03 0.80 4.96 -17.47 -0.09 0.72 16 8 N -0.87 -22.36 9.44 55.50 0.52 -21.83 16 9 Si 0.92 20.37 29.58 -169.99 -5.03 15.34 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.46 11.19 6.51 -10.99 -0.07 11.12 16 14 O -0.58 -15.93 15.44 5.55 0.09 -15.85 16 15 C -0.13 -2.43 2.22 -90.24 -0.20 -2.63 16 16 H 0.09 1.59 5.54 -51.93 -0.29 1.30 16 17 C -0.13 -2.30 6.32 -24.60 -0.16 -2.45 16 18 C 0.05 0.68 7.66 38.34 0.29 0.98 16 19 O -0.37 -6.59 11.18 -35.23 -0.39 -6.98 16 20 C 0.12 2.09 3.35 -27.31 -0.09 1.99 16 21 H 0.11 2.27 6.56 -51.93 -0.34 1.93 16 22 C -0.17 -2.49 8.87 -36.02 -0.32 -2.80 16 23 C -0.18 -2.34 14.32 29.02 0.42 -1.92 16 24 H 0.20 3.16 7.80 -54.09 -0.42 2.73 16 25 H 0.11 2.50 6.57 -51.93 -0.34 2.16 16 26 H 0.06 1.10 6.35 -51.93 -0.33 0.77 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.08 1.59 7.86 -51.93 -0.41 1.18 16 29 H 0.08 1.37 6.95 -51.93 -0.36 1.01 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.10 1.05 8.06 -52.48 -0.42 0.62 16 34 H 0.10 1.35 7.85 -52.48 -0.41 0.93 16 LS Contribution 290.23 15.07 4.37 4.37 Total: -1.00 -30.70 290.23 -5.08 -35.78 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.12 Total: 6.39 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.22 Total: -6.01 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.22 Total: -33.04 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.31 Total: -22.83 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.70 -5.08 -35.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491252979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.523 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds