Wall clock time and date at job start Mon Mar 30 2020 18:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46875 * 2 1 4 4 C 1.35173 * 125.47564 * 89.97885 * 3 2 1 5 5 C 1.40300 * 107.21251 * 179.77705 * 4 3 2 6 6 C 1.38036 * 106.52078 * 0.35063 * 5 4 3 7 7 C 1.41516 * 126.10558 * 179.90409 * 6 5 4 8 8 C 1.35786 * 120.00042 * 220.20839 * 7 6 5 9 9 C 1.41336 * 120.00254 * 8.59221 * 8 7 6 10 10 O 1.21849 * 119.99913 * 6.70973 * 9 8 7 11 11 N 1.34781 * 120.00282 * 186.70700 * 9 8 7 12 12 C 1.46494 * 119.99869 * 0.02562 * 11 9 8 13 13 C 1.36736 * 119.99816 * 179.97438 * 11 9 8 14 14 H 1.08002 * 120.00342 * 23.59700 * 13 11 9 15 15 C 1.39075 * 119.99894 * 203.59221 * 13 11 9 16 16 N 1.31356 * 119.99917 * 11.17608 * 15 13 11 17 17 Si 1.86800 * 120.00150 * 191.16996 * 15 13 11 18 18 H 1.48500 * 109.47148 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47322 * 120.00307 * 17 15 13 20 20 H 1.48506 * 109.47190 * 240.00471 * 17 15 13 21 21 O 1.34041 * 125.47859 * 269.97614 * 3 2 1 22 22 H 1.09003 * 109.46850 * 299.99666 * 1 2 3 23 23 H 1.08993 * 109.47610 * 59.99779 * 1 2 3 24 24 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47240 * 240.00380 * 2 1 3 26 26 H 1.09002 * 109.47083 * 119.99583 * 2 1 3 27 27 H 1.07997 * 126.39898 * 359.97438 * 4 3 2 28 28 H 1.07992 * 126.73905 * 180.24873 * 5 4 3 29 29 H 1.07994 * 119.99890 * 40.22171 * 7 6 5 30 30 H 1.08005 * 119.99968 * 188.86197 * 8 7 6 31 31 H 1.08995 * 109.47447 * 90.86821 * 12 11 9 32 32 H 1.09002 * 109.47212 * 210.86935 * 12 11 9 33 33 H 1.09002 * 109.47190 * 330.86487 * 12 11 9 34 34 H 0.96999 * 120.00299 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2934 2.1606 1.1008 5 6 2.7425 3.4150 0.6611 6 6 2.7242 3.3770 -0.7186 7 6 3.0976 4.4302 -1.5869 8 6 2.3743 4.6729 -2.7101 9 6 1.1500 3.9991 -2.9217 10 8 0.6828 3.2945 -2.0442 11 7 0.4993 4.1358 -4.0940 12 6 1.0612 4.9825 -5.1492 13 6 -0.6849 3.4835 -4.2988 14 1 -1.2892 3.1837 -3.4554 15 6 -1.1111 3.2061 -5.5932 16 7 -0.2885 3.3678 -6.6044 17 14 -2.8535 2.6033 -5.8938 18 1 -3.5735 2.5046 -4.5988 19 1 -3.5615 3.5590 -6.7828 20 1 -2.8104 1.2662 -6.5386 21 8 2.2920 2.1542 -1.0915 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.1807 1.8441 2.1272 28 1 3.0420 4.2474 1.2805 29 1 3.9579 5.0409 -1.3562 30 1 2.7366 5.3776 -3.4440 31 1 1.6982 4.3807 -5.7974 32 1 0.2519 5.4164 -5.7365 33 1 1.6516 5.7805 -4.6990 34 1 -0.5856 3.1739 -7.5072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492634972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:33 Heat of formation + Delta-G solvation = 10.281427 kcal Electronic energy + Delta-G solvation = -18328.423133 eV Core-core repulsion = 15422.325865 eV Total energy + Delta-G solvation = -2906.097268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69622 -38.58471 -35.00532 -33.78951 -32.88640 -31.82841 -31.52779 -27.74322 -26.33464 -24.92577 -23.51239 -21.71097 -21.01599 -19.67433 -18.12837 -17.01876 -16.68628 -15.55556 -15.08908 -14.70756 -14.30006 -14.03536 -13.84906 -13.42675 -13.07931 -12.59521 -12.32271 -12.10978 -11.98385 -11.82948 -11.55222 -11.33522 -11.17484 -11.08622 -10.86415 -10.63978 -10.36127 -10.33916 -9.32080 -9.08805 -9.03021 -8.33044 -7.69507 -7.11501 -6.41964 -3.86713 1.34902 2.79484 3.12896 3.20612 3.27832 3.35015 3.80646 4.08541 4.48153 5.01305 5.17714 5.19815 5.36335 5.52705 5.60473 5.62586 5.78328 5.82662 5.99341 6.07867 6.21271 6.33286 6.41073 6.43402 6.63712 6.66862 6.79306 6.83852 7.00669 7.17682 7.25073 7.46846 7.99783 8.11246 8.46425 9.17211 9.37452 10.03835 10.60559 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.007515 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.250994 B = 3725.103434 C = 4698.414111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C -0.005 4.005 4 C -0.223 4.223 5 C -0.217 4.217 6 C 0.055 3.945 7 C -0.075 4.075 8 C -0.152 4.152 9 C 0.449 3.551 10 O -0.576 6.576 11 N -0.429 5.429 12 C 0.107 3.893 13 C -0.289 4.289 14 H 0.102 0.898 15 C 0.027 3.973 16 N -0.872 5.872 17 Si 0.928 3.072 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.280 1.280 21 O -0.119 6.119 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -0.379 7.418 9.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 C -0.058 4.058 4 C -0.242 4.242 5 C -0.236 4.236 6 C 0.003 3.997 7 C -0.097 4.097 8 C -0.173 4.173 9 C 0.242 3.758 10 O -0.462 6.462 11 N -0.146 5.146 12 C -0.037 4.037 13 C -0.418 4.418 14 H 0.119 0.881 15 C -0.177 4.177 16 N -0.511 5.511 17 Si 0.754 3.246 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.206 1.206 21 O -0.012 6.012 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.925 -0.838 7.249 8.804 hybrid contribution -0.758 0.043 -0.356 0.839 sum 4.167 -0.795 6.893 8.093 Atomic orbital electron populations 1.21753 0.94018 1.01323 1.03428 1.19979 0.96536 0.88284 1.02852 1.22368 1.03509 0.95142 0.84795 1.21140 1.09710 0.95020 0.98359 1.21881 1.09754 0.98754 0.93231 1.19471 1.01331 0.86152 0.92705 1.20254 1.00087 0.95379 0.94004 1.22645 0.96355 1.01048 0.97277 1.16774 0.86578 0.87169 0.85309 1.90710 1.68941 1.43293 1.43303 1.43681 1.19679 1.39035 1.12216 1.21609 0.98917 0.92618 0.90561 1.19782 0.95793 1.32917 0.93320 0.88067 1.25453 0.99990 0.96887 0.95353 1.69978 1.34686 1.46644 0.99783 0.85825 0.81675 0.78336 0.78731 1.19058 1.20515 1.20572 1.84311 1.61921 1.21728 1.33262 0.92680 0.91105 0.92516 0.90660 0.89931 0.84713 0.84394 0.84176 0.85738 0.92279 0.91207 0.95053 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.89 37.16 0.37 -1.94 16 2 C -0.04 -0.61 6.46 -27.88 -0.18 -0.79 16 3 C -0.01 -0.10 6.56 -35.40 -0.23 -0.33 16 4 C -0.22 -3.95 10.76 -39.90 -0.43 -4.37 16 5 C -0.22 -3.94 10.90 -38.88 -0.42 -4.37 16 6 C 0.05 1.12 5.31 -38.41 -0.20 0.92 16 7 C -0.08 -1.37 9.95 -39.21 -0.39 -1.76 16 8 C -0.15 -3.07 9.15 -39.28 -0.36 -3.43 16 9 C 0.45 11.44 7.19 -15.08 -0.11 11.33 16 10 O -0.58 -16.25 12.13 -19.75 -0.24 -16.49 16 11 N -0.43 -11.25 3.01 -125.56 -0.38 -11.63 16 12 C 0.11 2.40 8.43 59.84 0.50 2.90 16 13 C -0.29 -8.12 9.26 -15.05 -0.14 -8.26 16 14 H 0.10 2.99 7.42 -52.49 -0.39 2.60 16 15 C 0.03 0.72 5.11 -17.44 -0.09 0.63 16 16 N -0.87 -23.11 10.66 55.50 0.59 -22.52 16 17 Si 0.93 20.65 29.57 -169.99 -5.03 15.63 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 O -0.12 -2.72 7.84 -20.19 -0.16 -2.88 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.14 2.09 8.06 -52.49 -0.42 1.66 16 29 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.12 2.10 6.01 -52.48 -0.32 1.79 16 31 H 0.06 1.38 7.58 -51.93 -0.39 0.98 16 32 H 0.07 1.63 7.04 -51.93 -0.37 1.26 16 33 H 0.03 0.58 5.96 -51.93 -0.31 0.27 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -32.29 290.69 -6.80 -39.10 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.29 Total: 3.89 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.68 Total: -9.47 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.21 Total: -34.15 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.40 Total: -19.37 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.29 -6.80 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492634972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.378 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds