Wall clock time and date at job start Mon Mar 30 2020 18:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46875 * 2 1 4 4 C 1.35173 * 125.47564 * 89.97885 * 3 2 1 5 5 C 1.40300 * 107.21251 * 179.77705 * 4 3 2 6 6 C 1.38036 * 106.52078 * 0.35063 * 5 4 3 7 7 C 1.41516 * 126.10558 * 179.90409 * 6 5 4 8 8 C 1.35786 * 120.00042 * 220.20839 * 7 6 5 9 9 C 1.41336 * 120.00254 * 8.59221 * 8 7 6 10 10 O 1.21849 * 119.99913 * 6.70973 * 9 8 7 11 11 N 1.34781 * 120.00282 * 186.70700 * 9 8 7 12 12 C 1.46494 * 119.99869 * 0.02562 * 11 9 8 13 13 C 1.36736 * 119.99816 * 179.97438 * 11 9 8 14 14 H 1.08002 * 120.00342 * 23.59700 * 13 11 9 15 15 C 1.39075 * 119.99894 * 203.59221 * 13 11 9 16 16 N 1.31356 * 119.99917 * 11.17608 * 15 13 11 17 17 Si 1.86800 * 120.00150 * 191.16996 * 15 13 11 18 18 H 1.48500 * 109.47148 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47322 * 120.00307 * 17 15 13 20 20 H 1.48506 * 109.47190 * 240.00471 * 17 15 13 21 21 O 1.34041 * 125.47859 * 269.97614 * 3 2 1 22 22 H 1.09003 * 109.46850 * 299.99666 * 1 2 3 23 23 H 1.08993 * 109.47610 * 59.99779 * 1 2 3 24 24 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47240 * 240.00380 * 2 1 3 26 26 H 1.09002 * 109.47083 * 119.99583 * 2 1 3 27 27 H 1.07997 * 126.39898 * 359.97438 * 4 3 2 28 28 H 1.07992 * 126.73905 * 180.24873 * 5 4 3 29 29 H 1.07994 * 119.99890 * 40.22171 * 7 6 5 30 30 H 1.08005 * 119.99968 * 188.86197 * 8 7 6 31 31 H 1.08995 * 109.47447 * 90.86821 * 12 11 9 32 32 H 1.09002 * 109.47212 * 210.86935 * 12 11 9 33 33 H 1.09002 * 109.47190 * 330.86487 * 12 11 9 34 34 H 0.96999 * 120.00299 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2934 2.1606 1.1008 5 6 2.7425 3.4150 0.6611 6 6 2.7242 3.3770 -0.7186 7 6 3.0976 4.4302 -1.5869 8 6 2.3743 4.6729 -2.7101 9 6 1.1500 3.9991 -2.9217 10 8 0.6828 3.2945 -2.0442 11 7 0.4993 4.1358 -4.0940 12 6 1.0612 4.9825 -5.1492 13 6 -0.6849 3.4835 -4.2988 14 1 -1.2892 3.1837 -3.4554 15 6 -1.1111 3.2061 -5.5932 16 7 -0.2885 3.3678 -6.6044 17 14 -2.8535 2.6033 -5.8938 18 1 -3.5735 2.5046 -4.5988 19 1 -3.5615 3.5590 -6.7828 20 1 -2.8104 1.2662 -6.5386 21 8 2.2920 2.1542 -1.0915 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.1807 1.8441 2.1272 28 1 3.0420 4.2474 1.2805 29 1 3.9579 5.0409 -1.3562 30 1 2.7366 5.3776 -3.4440 31 1 1.6982 4.3807 -5.7974 32 1 0.2519 5.4164 -5.7365 33 1 1.6516 5.7805 -4.6990 34 1 -0.5856 3.1739 -7.5072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492634972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:32 Heat of formation + Delta-G solvation = -8.730657 kcal Electronic energy + Delta-G solvation = -18329.247559 eV Core-core repulsion = 15422.325865 eV Total energy + Delta-G solvation = -2906.921693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.19143 -40.46005 -36.86622 -35.25538 -34.44392 -33.69353 -33.08472 -29.31750 -28.14340 -26.69986 -25.05158 -23.24573 -22.49597 -21.19083 -19.79055 -18.93797 -18.46073 -17.22261 -16.64971 -16.47003 -15.99555 -15.79206 -15.29677 -15.05903 -14.58701 -14.00679 -13.89494 -13.76779 -13.49251 -13.34177 -13.21291 -13.15928 -12.88250 -12.64513 -12.39624 -12.27158 -12.14857 -11.91425 -11.08209 -10.79205 -10.52086 -10.27503 -9.67130 -8.62652 -8.38522 -5.96262 -0.16444 1.28029 1.36187 1.39789 1.50599 1.89508 2.24674 2.41486 2.63002 3.19813 3.24178 3.87121 4.03483 4.19246 4.22548 4.28218 4.36227 4.50354 4.61904 4.76170 4.86563 4.91706 4.95264 5.00800 5.05078 5.22365 5.29110 5.34127 5.35900 5.39298 5.56800 5.87683 6.09940 6.49729 6.54715 7.17551 7.45795 8.09710 8.63201 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.007515 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.250994 B = 3725.103434 C = 4698.414111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.027 4.027 4 C -0.225 4.225 5 C -0.201 4.201 6 C 0.000 4.000 7 C -0.032 4.032 8 C -0.191 4.191 9 C 0.445 3.555 10 O -0.613 6.613 11 N -0.455 5.455 12 C 0.119 3.881 13 C -0.332 4.332 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.893 5.893 17 Si 0.990 3.010 18 H -0.275 1.275 19 H -0.262 1.262 20 H -0.274 1.274 21 O -0.161 6.161 22 H 0.059 0.941 23 H 0.019 0.981 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.170 0.830 28 H 0.173 0.827 29 H 0.197 0.803 30 H 0.160 0.840 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -0.049 9.097 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.079 4.079 4 C -0.244 4.244 5 C -0.220 4.220 6 C -0.050 4.050 7 C -0.053 4.053 8 C -0.212 4.212 9 C 0.239 3.761 10 O -0.502 6.502 11 N -0.172 5.172 12 C -0.024 4.024 13 C -0.461 4.461 14 H 0.086 0.914 15 C -0.207 4.207 16 N -0.531 5.531 17 Si 0.813 3.187 18 H -0.200 1.200 19 H -0.186 1.186 20 H -0.199 1.199 21 O -0.056 6.056 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.143 0.857 27 H 0.187 0.813 28 H 0.191 0.809 29 H 0.214 0.786 30 H 0.177 0.823 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.235 -0.484 8.919 10.893 hybrid contribution -1.011 -0.129 -0.580 1.173 sum 5.224 -0.613 8.338 9.859 Atomic orbital electron populations 1.21698 0.94428 1.02695 1.01092 1.20201 0.96052 0.86834 1.04679 1.23257 1.03244 0.96662 0.84749 1.21624 1.08634 0.94590 0.99532 1.22411 1.07321 0.99709 0.92539 1.20217 1.03650 0.86625 0.94519 1.21052 0.99514 0.93302 0.91414 1.22592 0.95191 1.03383 0.99989 1.17695 0.87812 0.86267 0.84355 1.90673 1.70378 1.44668 1.44458 1.43851 1.19801 1.40275 1.13309 1.21521 0.98291 0.92825 0.89764 1.19591 0.97449 1.35945 0.93123 0.91426 1.26149 1.03454 0.96501 0.94598 1.70044 1.35926 1.47120 1.00025 0.84938 0.77270 0.78282 0.78235 1.19990 1.18644 1.19942 1.84274 1.62863 1.23112 1.35341 0.92159 0.96139 0.89302 0.91163 0.85665 0.81268 0.80927 0.78592 0.82308 0.93714 0.92829 0.90816 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.89 71.98 0.71 -3.70 16 2 C -0.04 -1.21 6.46 29.85 0.19 -1.02 16 3 C -0.03 -1.01 6.56 24.98 0.16 -0.85 16 4 C -0.23 -7.37 10.76 22.06 0.24 -7.13 16 5 C -0.20 -6.70 10.90 22.72 0.25 -6.45 16 6 C 0.00 0.00 5.31 23.03 0.12 0.12 16 7 C -0.03 -1.08 9.95 22.51 0.22 -0.86 16 8 C -0.19 -7.50 9.15 22.46 0.21 -7.29 16 9 C 0.44 23.32 7.19 85.00 0.61 23.93 16 10 O -0.61 -36.19 12.13 18.90 0.23 -35.96 16 11 N -0.45 -24.77 3.01 -669.32 -2.01 -26.79 16 12 C 0.12 5.43 8.43 127.77 1.08 6.51 16 13 C -0.33 -19.73 9.26 84.13 0.78 -18.96 16 14 H 0.07 4.33 7.42 -2.91 -0.02 4.30 16 15 C -0.01 -0.27 5.11 84.96 0.43 0.16 16 16 N -0.89 -48.53 10.66 21.69 0.23 -48.30 16 17 Si 0.99 43.69 29.57 68.60 2.03 45.72 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 O -0.16 -7.45 7.84 17.32 0.14 -7.32 16 22 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 26 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.17 4.23 8.06 -2.91 -0.02 4.20 16 28 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.20 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.16 4.96 6.01 -2.91 -0.02 4.94 16 31 H 0.04 2.12 7.58 -2.39 -0.02 2.10 16 32 H 0.05 2.56 7.04 -2.39 -0.02 2.55 16 33 H 0.07 2.64 5.96 -2.39 -0.01 2.63 16 34 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -75.86 290.69 6.71 -69.15 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.09 Total: 19.04 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 5.01 Total: -15.55 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.78 Total: -75.08 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: 0.36 Total: -43.28 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -75.86 6.71 -69.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492634972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.418 kcal (2) G-P(sol) polarization free energy of solvation -75.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds