Wall clock time and date at job start Mon Mar 30 2020 18:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 115.54775 * 2 1 4 4 C 1.53070 * 117.53395 * 214.27964 * 2 1 3 5 5 C 1.52998 * 59.98745 * 252.53562 * 4 2 1 6 6 H 1.09000 * 117.49930 * 252.50685 * 5 4 2 7 7 C 1.50697 * 117.49875 * 107.49820 * 5 4 2 8 8 C 1.34515 * 125.78857 * 171.25702 * 7 5 4 9 9 C 1.41381 * 106.84225 * 179.79517 * 8 7 5 10 10 C 1.34511 * 106.83990 * 0.37272 * 9 8 7 11 11 C 1.50703 * 125.79059 * 179.89057 * 10 9 8 12 12 N 1.46505 * 109.47064 * 89.68701 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21685 * 120.00526 * 0.02562 * 13 12 11 15 15 C 1.46381 * 119.99614 * 180.02562 * 13 12 11 16 16 H 1.07993 * 120.00106 * 0.02562 * 15 13 12 17 17 C 1.40051 * 119.99693 * 180.02562 * 15 13 12 18 18 N 1.30666 * 120.00364 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99754 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46872 * 60.00052 * 19 17 15 21 21 H 1.48494 * 109.46914 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47008 * 300.00175 * 19 17 15 23 23 O 1.34302 * 125.79356 * 351.28193 * 7 5 4 24 24 H 1.08994 * 109.47409 * 274.33400 * 1 2 3 25 25 H 1.09006 * 109.46750 * 34.33478 * 1 2 3 26 26 H 1.09005 * 109.46744 * 154.32879 * 1 2 3 27 27 H 1.09005 * 117.49516 * 145.04550 * 4 2 1 28 28 H 1.08998 * 117.51407 * 0.02562 * 4 2 1 29 29 H 1.08002 * 126.57711 * 0.03679 * 8 7 5 30 30 H 1.07999 * 126.58026 * 180.22916 * 9 8 7 31 31 H 1.09002 * 109.47152 * 329.68784 * 11 10 9 32 32 H 1.09001 * 109.46980 * 209.68885 * 11 10 9 33 33 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 34 34 H 0.97002 * 120.00059 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2377 -1.1216 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1711 -0.8744 1.2694 7 6 1.3719 -2.1404 1.4612 8 6 1.3683 -2.3993 2.7811 9 6 0.4094 -3.4157 2.9966 10 6 -0.1096 -3.7228 1.7943 11 6 -1.1716 -4.7594 1.5315 12 7 -2.4950 -4.1390 1.6317 13 6 -3.6032 -4.8798 1.4332 14 8 -3.5046 -6.0640 1.1713 15 6 -4.9254 -4.2598 1.5328 16 1 -5.0129 -3.2087 1.7649 17 6 -6.0771 -5.0298 1.3271 18 7 -5.9713 -6.3014 1.0458 19 14 -7.7645 -4.2384 1.4534 20 1 -7.8769 -3.1494 0.4499 21 1 -8.8108 -5.2597 1.1941 22 1 -7.9470 -3.6767 2.8159 23 8 0.4747 -2.9450 0.8684 24 1 -0.3634 0.0777 1.0246 25 1 -0.3633 0.8487 -0.5797 26 1 -0.3633 -0.9263 -0.4452 27 1 3.1730 -0.8756 -1.2672 28 1 1.6132 -1.8595 -1.2680 29 1 1.9779 -1.9198 3.5328 30 1 0.1461 -3.8617 3.9443 31 1 -1.0886 -5.5592 2.2674 32 1 -1.0379 -5.1709 0.5311 33 1 -2.5734 -3.1950 1.8402 34 1 -6.7690 -6.8347 0.9036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548122195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:38 Heat of formation + Delta-G solvation = -7.739725 kcal Electronic energy + Delta-G solvation = -17500.996074 eV Core-core repulsion = 14594.117351 eV Total energy + Delta-G solvation = -2906.878723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.45553 -37.89370 -37.24208 -33.67895 -32.74317 -32.30006 -29.91397 -28.55119 -26.75759 -24.98634 -22.24302 -21.74047 -20.72270 -19.74036 -19.60233 -17.53469 -16.31940 -16.05766 -15.58496 -15.23339 -14.63096 -14.00294 -13.95921 -13.34680 -13.22959 -13.05143 -12.67073 -12.49233 -12.33387 -11.89327 -11.82736 -11.57712 -11.30632 -11.17157 -10.88412 -10.66971 -10.47445 -10.26835 -10.16792 -9.65783 -8.85704 -8.18363 -7.59807 -7.58564 -6.19821 -4.65842 1.79122 2.72703 3.00174 3.16197 3.20954 3.23161 3.70413 4.11280 4.38069 4.54076 4.56851 4.71951 4.92680 5.08121 5.18142 5.23655 5.29322 5.53181 5.62965 5.70777 5.75941 5.84103 5.95337 5.97694 6.02568 6.12068 6.25880 6.31494 6.39049 6.71858 7.41650 7.42427 7.87024 8.00797 8.30097 9.00867 9.47692 10.57074 10.74925 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.004716 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.611894 B = 5935.867178 C = 6404.357849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 H 0.110 0.890 4 C -0.169 4.169 5 C -0.081 4.081 6 H 0.131 0.869 7 C 0.016 3.984 8 C -0.206 4.206 9 C -0.200 4.200 10 C -0.009 4.009 11 C 0.210 3.790 12 N -0.763 5.763 13 C 0.555 3.445 14 O -0.580 6.580 15 C -0.544 4.544 16 H 0.068 0.932 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.909 3.091 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 O -0.167 6.167 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.383 0.617 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.080 11.811 0.316 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 H 0.128 0.872 4 C -0.206 4.206 5 C -0.099 4.099 6 H 0.148 0.852 7 C -0.035 4.035 8 C -0.225 4.225 9 C -0.220 4.220 10 C -0.059 4.059 11 C 0.086 3.914 12 N -0.420 5.420 13 C 0.360 3.640 14 O -0.463 6.463 15 C -0.580 4.580 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.734 3.266 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.192 1.192 23 O -0.063 6.063 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.215 0.785 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.987 10.711 -0.244 17.619 hybrid contribution -0.666 0.860 0.485 1.191 sum 13.322 11.571 0.240 17.647 Atomic orbital electron populations 1.21393 0.92097 1.02568 1.02313 1.22515 0.96197 0.93929 1.02977 0.87152 1.23211 1.02931 1.01769 0.92647 1.20563 0.98655 0.96577 0.94067 0.85152 1.21209 0.94781 0.95862 0.91625 1.21417 1.03694 1.02177 0.95231 1.21593 1.00574 1.01390 0.98438 1.22813 0.99108 0.96891 0.87078 1.19302 0.79945 0.89927 1.02256 1.46260 1.03583 1.12723 1.79480 1.18249 0.83114 0.85874 0.76766 1.90606 1.86426 1.16105 1.53144 1.20827 0.89114 0.96592 1.51516 0.91388 1.25703 1.00435 0.94394 0.92664 1.70005 1.29983 1.06179 1.33445 0.86414 0.81356 0.79422 0.79445 1.19263 1.20517 1.19244 1.83969 1.43483 1.41111 1.37779 0.92029 0.92022 0.91734 0.88174 0.87941 0.83835 0.83433 0.90035 0.91685 0.78527 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.15 37.16 0.34 -1.11 16 2 C -0.14 -1.35 6.41 -90.58 -0.58 -1.93 16 3 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.17 -1.66 9.82 -26.70 -0.26 -1.93 16 5 C -0.08 -0.85 6.24 -91.77 -0.57 -1.42 16 6 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 7 C 0.02 0.22 5.89 -35.63 -0.21 0.01 16 8 C -0.21 -2.80 10.81 -39.70 -0.43 -3.23 16 9 C -0.20 -3.06 10.81 -39.70 -0.43 -3.49 16 10 C -0.01 -0.15 6.69 -35.62 -0.24 -0.38 16 11 C 0.21 4.21 6.20 -5.19 -0.03 4.18 16 12 N -0.76 -17.57 5.54 -62.90 -0.35 -17.92 16 13 C 0.56 15.95 7.75 -12.99 -0.10 15.85 16 14 O -0.58 -18.84 15.02 5.20 0.08 -18.76 16 15 C -0.54 -15.46 9.54 -35.63 -0.34 -15.80 16 16 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 17 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 18 N -0.77 -23.06 11.83 55.55 0.66 -22.40 16 19 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 O -0.17 -2.76 9.63 5.71 0.05 -2.70 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.87 7.27 -51.93 -0.38 0.49 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.18 7.88 -51.93 -0.41 0.77 16 29 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.38 8.02 8.44 -40.82 -0.34 7.67 16 34 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -33.75 300.54 -7.49 -41.24 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.48 Total: 7.74 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.95 Total: -6.87 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.31 Total: -40.32 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.13 Total: -21.46 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.75 -7.49 -41.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548122195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.496 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds