Wall clock time and date at job start Mon Mar 30 2020 18:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 115.54775 * 2 1 4 4 C 1.53070 * 117.53395 * 214.27964 * 2 1 3 5 5 C 1.52998 * 59.98745 * 252.53562 * 4 2 1 6 6 H 1.09000 * 117.49930 * 252.50685 * 5 4 2 7 7 C 1.50697 * 117.49875 * 107.49820 * 5 4 2 8 8 C 1.34515 * 125.78857 * 171.25702 * 7 5 4 9 9 C 1.41381 * 106.84225 * 179.79517 * 8 7 5 10 10 C 1.34511 * 106.83990 * 0.37272 * 9 8 7 11 11 C 1.50703 * 125.79059 * 179.89057 * 10 9 8 12 12 N 1.46505 * 109.47064 * 89.68701 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21685 * 120.00526 * 0.02562 * 13 12 11 15 15 C 1.46381 * 119.99614 * 180.02562 * 13 12 11 16 16 H 1.07993 * 120.00106 * 0.02562 * 15 13 12 17 17 C 1.40051 * 119.99693 * 180.02562 * 15 13 12 18 18 N 1.30666 * 120.00364 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99754 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46872 * 60.00052 * 19 17 15 21 21 H 1.48494 * 109.46914 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47008 * 300.00175 * 19 17 15 23 23 O 1.34302 * 125.79356 * 351.28193 * 7 5 4 24 24 H 1.08994 * 109.47409 * 274.33400 * 1 2 3 25 25 H 1.09006 * 109.46750 * 34.33478 * 1 2 3 26 26 H 1.09005 * 109.46744 * 154.32879 * 1 2 3 27 27 H 1.09005 * 117.49516 * 145.04550 * 4 2 1 28 28 H 1.08998 * 117.51407 * 0.02562 * 4 2 1 29 29 H 1.08002 * 126.57711 * 0.03679 * 8 7 5 30 30 H 1.07999 * 126.58026 * 180.22916 * 9 8 7 31 31 H 1.09002 * 109.47152 * 329.68784 * 11 10 9 32 32 H 1.09001 * 109.46980 * 209.68885 * 11 10 9 33 33 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 34 34 H 0.97002 * 120.00059 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2377 -1.1216 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1711 -0.8744 1.2694 7 6 1.3719 -2.1404 1.4612 8 6 1.3683 -2.3993 2.7811 9 6 0.4094 -3.4157 2.9966 10 6 -0.1096 -3.7228 1.7943 11 6 -1.1716 -4.7594 1.5315 12 7 -2.4950 -4.1390 1.6317 13 6 -3.6032 -4.8798 1.4332 14 8 -3.5046 -6.0640 1.1713 15 6 -4.9254 -4.2598 1.5328 16 1 -5.0129 -3.2087 1.7649 17 6 -6.0771 -5.0298 1.3271 18 7 -5.9713 -6.3014 1.0458 19 14 -7.7645 -4.2384 1.4534 20 1 -7.8769 -3.1494 0.4499 21 1 -8.8108 -5.2597 1.1941 22 1 -7.9470 -3.6767 2.8159 23 8 0.4747 -2.9450 0.8684 24 1 -0.3634 0.0777 1.0246 25 1 -0.3633 0.8487 -0.5797 26 1 -0.3633 -0.9263 -0.4452 27 1 3.1730 -0.8756 -1.2672 28 1 1.6132 -1.8595 -1.2680 29 1 1.9779 -1.9198 3.5328 30 1 0.1461 -3.8617 3.9443 31 1 -1.0886 -5.5592 2.2674 32 1 -1.0379 -5.1709 0.5311 33 1 -2.5734 -3.1950 1.8402 34 1 -6.7690 -6.8347 0.9036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548122195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:38 Heat of formation + Delta-G solvation = -30.241564 kcal Electronic energy + Delta-G solvation = -17501.971827 eV Core-core repulsion = 14594.117351 eV Total energy + Delta-G solvation = -2907.854476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.65370 -39.44984 -38.64959 -35.56813 -34.53173 -33.92190 -31.38323 -29.59153 -28.58092 -26.62421 -23.30398 -22.86993 -21.91214 -21.59765 -20.69117 -19.48072 -17.67282 -17.37626 -17.20507 -16.50172 -16.09457 -15.89911 -15.63507 -14.98787 -14.32085 -14.17348 -14.02576 -13.83704 -13.70004 -13.33228 -13.18661 -12.94753 -12.75805 -12.66356 -12.61807 -12.36984 -12.05946 -11.53383 -10.98225 -10.93773 -10.83015 -10.01919 -9.62692 -9.20118 -8.31262 -6.89715 0.58581 1.40002 1.43540 1.54912 1.57888 1.82993 2.25120 2.43305 2.88638 3.17445 3.44469 3.55827 3.71005 3.80140 3.95825 4.11325 4.22827 4.42304 4.44779 4.54048 4.73533 4.82891 4.84744 4.88106 4.99621 5.10827 5.11792 5.15695 5.29226 5.39988 5.59021 5.81231 6.04884 6.19812 6.21323 6.83272 7.43082 8.41466 8.62947 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.004716 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.611894 B = 5935.867178 C = 6404.357849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 H 0.143 0.857 4 C -0.169 4.169 5 C -0.089 4.089 6 H 0.164 0.836 7 C 0.019 3.981 8 C -0.210 4.210 9 C -0.186 4.186 10 C -0.042 4.042 11 C 0.217 3.783 12 N -0.751 5.751 13 C 0.539 3.461 14 O -0.629 6.629 15 C -0.573 4.573 16 H 0.087 0.913 17 C 0.030 3.970 18 N -0.820 5.820 19 Si 1.000 3.000 20 H -0.255 1.255 21 H -0.272 1.272 22 H -0.253 1.253 23 O -0.185 6.185 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.177 0.823 30 H 0.159 0.841 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.394 0.606 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.825 14.724 1.022 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 H 0.161 0.839 4 C -0.206 4.206 5 C -0.107 4.107 6 H 0.182 0.818 7 C -0.031 4.031 8 C -0.229 4.229 9 C -0.206 4.206 10 C -0.092 4.092 11 C 0.093 3.907 12 N -0.407 5.407 13 C 0.344 3.656 14 O -0.517 6.517 15 C -0.609 4.609 16 H 0.105 0.895 17 C -0.186 4.186 18 N -0.449 5.449 19 Si 0.819 3.181 20 H -0.179 1.179 21 H -0.197 1.197 22 H -0.177 1.177 23 O -0.083 6.083 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.147 0.853 28 H 0.095 0.905 29 H 0.194 0.806 30 H 0.177 0.823 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.227 0.773 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.776 13.664 0.475 20.132 hybrid contribution -0.777 -0.002 0.245 0.814 sum 14.000 13.663 0.720 19.575 Atomic orbital electron populations 1.21394 0.93899 1.01697 1.01635 1.22616 0.94843 0.95185 1.02156 0.83919 1.23257 1.03802 1.01248 0.92313 1.20921 0.99345 0.95939 0.94481 0.81830 1.22040 0.93615 0.95146 0.92320 1.21765 1.03580 1.01699 0.95824 1.21865 0.99860 1.00941 0.97959 1.22213 1.00425 0.98403 0.88126 1.19113 0.79581 0.90954 1.01046 1.45934 1.03874 1.12850 1.78016 1.18639 0.84825 0.85622 0.76541 1.90557 1.87503 1.18157 1.55449 1.21376 0.89731 0.97762 1.52019 0.89488 1.26987 1.05592 0.94753 0.91225 1.70170 1.31947 1.08392 1.34394 0.85042 0.74381 0.78438 0.80254 1.17912 1.19678 1.17706 1.83948 1.44376 1.41686 1.38277 0.93005 0.90451 0.94683 0.85303 0.90527 0.80576 0.82320 0.90435 0.93581 0.77288 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.15 71.98 0.66 -2.16 16 2 C -0.13 -2.17 6.41 -10.77 -0.07 -2.23 16 3 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.17 -2.97 9.82 30.62 0.30 -2.67 16 5 C -0.09 -1.61 6.24 -11.54 -0.07 -1.68 16 6 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 7 C 0.02 0.50 5.89 24.83 0.15 0.64 16 8 C -0.21 -5.21 10.81 22.19 0.24 -4.97 16 9 C -0.19 -5.53 10.81 22.19 0.24 -5.29 16 10 C -0.04 -1.47 6.69 24.83 0.17 -1.31 16 11 C 0.22 9.19 6.20 85.63 0.53 9.72 16 12 N -0.75 -35.96 5.54 -471.13 -2.61 -38.58 16 13 C 0.54 32.20 7.75 86.36 0.67 32.87 16 14 O -0.63 -42.99 15.02 -4.30 -0.06 -43.06 16 15 C -0.57 -33.11 9.54 24.83 0.24 -32.87 16 16 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 17 C 0.03 1.68 5.50 85.31 0.47 2.15 16 18 N -0.82 -50.62 11.83 21.84 0.26 -50.36 16 19 Si 1.00 41.17 29.56 68.60 2.03 43.19 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 23 O -0.19 -6.22 9.63 -2.48 -0.02 -6.24 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.03 0.95 7.27 -2.38 -0.02 0.94 16 27 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.08 1.76 7.88 -2.39 -0.02 1.74 16 29 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.16 4.26 8.06 -2.91 -0.02 4.23 16 31 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.39 16.93 8.44 -92.71 -0.78 16.14 16 34 H 0.28 15.41 8.29 -92.71 -0.77 14.64 16 Total: -1.00 -76.46 300.54 3.43 -73.03 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.33 Total: 29.80 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 3.52 Total: -7.80 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -2.35 Total: -88.94 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -0.09 Total: -49.30 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -76.46 3.43 -73.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548122195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.788 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds