Wall clock time and date at job start Mon Mar 30 2020 18:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35768 * 117.00181 * 2 1 4 4 N 1.32164 * 119.71303 * 359.97438 * 3 2 1 5 5 C 1.31994 * 121.69803 * 179.97438 * 4 3 2 6 6 C 1.38046 * 120.94349 * 0.02562 * 5 4 3 7 7 C 1.38780 * 119.32753 * 359.74736 * 6 5 4 8 8 C 1.38795 * 118.43914 * 0.51652 * 7 6 5 9 9 O 1.36000 * 120.49233 * 179.73943 * 8 7 6 10 10 C 1.42905 * 116.99935 * 354.18367 * 9 8 7 11 11 C 1.52991 * 109.47050 * 184.17882 * 10 9 8 12 12 C 1.50703 * 115.55103 * 281.13285 * 11 10 9 13 13 H 1.08003 * 119.99669 * 144.15975 * 12 11 10 14 14 C 1.37873 * 119.99717 * 324.15931 * 12 11 10 15 15 N 1.31514 * 120.00349 * 338.95142 * 14 12 11 16 16 Si 1.86801 * 119.99644 * 158.95583 * 14 12 11 17 17 H 1.48495 * 109.47435 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47105 * 119.99926 * 16 14 12 19 19 H 1.48507 * 109.47211 * 239.99727 * 16 14 12 20 20 C 1.53007 * 117.49881 * 135.42870 * 11 10 9 21 21 C 1.52995 * 117.50212 * 66.80813 * 11 10 9 22 22 H 1.09000 * 109.47383 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47244 * 300.00196 * 1 2 3 24 24 H 1.09009 * 109.46669 * 59.99860 * 1 2 3 25 25 H 1.08008 * 119.52561 * 179.97438 * 5 4 3 26 26 H 1.08000 * 120.33781 * 180.02562 * 6 5 4 27 27 H 1.08005 * 120.77781 * 180.25400 * 7 6 5 28 28 H 1.09004 * 109.47043 * 304.18333 * 10 9 8 29 29 H 1.09005 * 109.46932 * 64.17533 * 10 9 8 30 30 H 0.97006 * 120.00171 * 185.03966 * 15 14 12 31 31 H 1.08996 * 117.49597 * 359.97438 * 20 11 10 32 32 H 1.08997 * 117.49840 * 145.02035 * 20 11 10 33 33 H 1.08997 * 117.50166 * 214.98070 * 21 11 10 34 34 H 1.09011 * 117.49815 * 359.97272 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.3201 2.3145 -0.0005 5 6 1.8782 3.5106 0.0000 6 6 3.2513 3.6531 0.0005 7 6 4.0524 2.5199 0.0059 8 6 3.4373 1.2757 -0.0005 9 8 4.1820 0.1377 -0.0009 10 6 5.5978 0.2889 -0.1237 11 6 6.2525 -1.0912 -0.2096 12 6 6.4125 -1.8174 1.1011 13 1 6.2984 -2.8907 1.1412 14 6 6.7048 -1.1118 2.2490 15 7 7.2436 0.0850 2.1659 16 14 6.3354 -1.8558 3.9221 17 1 5.7346 -3.2020 3.7436 18 1 7.5949 -1.9746 4.7000 19 1 5.3828 -0.9820 4.6531 20 6 7.3401 -1.2925 -1.2668 21 6 5.9637 -1.9339 -1.4535 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 1.2517 4.3904 -0.0009 26 1 3.6977 4.6366 0.0013 27 1 5.1291 2.6042 0.0105 28 1 5.8257 0.8561 -1.0261 29 1 5.9832 0.8204 0.7465 30 1 7.5165 0.5511 2.9718 31 1 7.5889 -0.4418 -1.9012 32 1 8.1718 -1.9503 -1.0142 33 1 5.8898 -3.0136 -1.3239 34 1 5.3068 -1.5052 -2.2105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596268882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:45 Heat of formation + Delta-G solvation = -7.080942 kcal Electronic energy + Delta-G solvation = -18226.088340 eV Core-core repulsion = 15319.238183 eV Total energy + Delta-G solvation = -2906.850156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43417 -38.12586 -37.30280 -35.87967 -32.26316 -31.51849 -29.90132 -26.95465 -26.55739 -25.42849 -22.67722 -22.47734 -21.18444 -19.22216 -18.15487 -17.17480 -16.94959 -16.01942 -15.84351 -14.92788 -14.73713 -14.35652 -14.22158 -13.67803 -13.60571 -13.12004 -12.65882 -12.31295 -11.92138 -11.66538 -11.24835 -11.11206 -10.94398 -10.87191 -10.48739 -10.40092 -10.18049 -9.65852 -9.41554 -9.24326 -9.10174 -8.78338 -8.11707 -7.46770 -6.18475 -4.11998 1.50273 1.59392 3.24699 3.34943 3.39262 3.40856 3.88497 4.08185 4.33683 4.66893 4.92085 5.14246 5.30369 5.37056 5.48826 5.51400 5.55328 5.63212 5.80010 5.94373 6.14693 6.25282 6.36389 6.39545 6.56018 6.67886 6.70932 6.78643 6.95926 7.28064 7.35063 7.50579 7.85212 8.01666 8.25993 8.33394 8.79907 9.43774 10.85675 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.007417 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.002514 B = 3774.264729 C = 3935.878323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.293 6.293 3 C 0.284 3.716 4 N -0.510 5.510 5 C 0.071 3.929 6 C -0.165 4.165 7 C -0.147 4.147 8 C 0.094 3.906 9 O -0.284 6.284 10 C 0.082 3.918 11 C 0.051 3.949 12 C -0.485 4.485 13 H 0.066 0.934 14 C 0.072 3.928 15 N -0.880 5.880 16 Si 0.891 3.109 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.281 1.281 20 C -0.192 4.192 21 C -0.200 4.200 22 H 0.092 0.908 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.154 0.846 26 H 0.134 0.866 27 H 0.148 0.852 28 H 0.026 0.974 29 H 0.116 0.884 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 6.011 -4.076 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.200 6.200 3 C 0.102 3.898 4 N -0.235 5.235 5 C -0.083 4.083 6 C -0.186 4.186 7 C -0.173 4.173 8 C 0.043 3.957 9 O -0.195 6.195 10 C 0.008 3.992 11 C 0.050 3.950 12 C -0.521 4.521 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.517 5.517 16 Si 0.718 3.282 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.206 1.206 20 C -0.230 4.230 21 C -0.237 4.237 22 H 0.110 0.890 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.171 0.829 26 H 0.152 0.848 27 H 0.166 0.834 28 H 0.044 0.956 29 H 0.133 0.867 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.020 5.617 -3.934 11.331 hybrid contribution 0.736 0.128 0.823 1.112 sum -8.284 5.746 -3.111 10.550 Atomic orbital electron populations 1.22777 0.78324 1.02509 1.01749 1.86408 1.21731 1.23688 1.88173 1.19164 0.86787 0.85292 0.98540 1.67275 1.39613 0.98461 1.18147 1.22055 0.92811 0.93323 1.00073 1.21763 0.94422 0.99063 1.03333 1.21658 1.01678 0.90865 1.03102 1.19185 0.89233 0.88138 0.99156 1.86277 1.21345 1.26105 1.85741 1.22939 0.75134 0.99610 1.01531 1.18770 0.95473 0.91213 0.89527 1.20520 1.48026 0.93507 0.90073 0.91614 1.24944 0.93793 0.94878 0.99448 1.69807 1.38490 1.14439 1.28974 0.86548 0.78245 0.79827 0.83566 1.19382 1.21058 1.20633 1.23003 0.92436 1.02156 1.05368 1.22811 0.98960 0.98900 1.03028 0.88970 0.92781 0.92838 0.82861 0.84846 0.83425 0.95551 0.86678 0.92592 0.91627 0.89777 0.90298 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 101.05 1.05 1.63 16 2 O -0.29 -5.65 10.27 -33.40 -0.34 -5.99 16 3 C 0.28 5.54 7.50 -17.00 -0.13 5.41 16 4 N -0.51 -8.70 9.22 -13.21 -0.12 -8.83 16 5 C 0.07 1.02 11.17 -17.55 -0.20 0.82 16 6 C -0.17 -2.38 10.10 -39.45 -0.40 -2.78 16 7 C -0.15 -2.61 9.14 -39.18 -0.36 -2.97 16 8 C 0.09 1.94 6.71 -38.96 -0.26 1.68 16 9 O -0.28 -6.77 9.93 -34.13 -0.34 -7.11 16 10 C 0.08 1.94 4.40 37.15 0.16 2.11 16 11 C 0.05 1.27 1.97 -155.66 -0.31 0.97 16 12 C -0.48 -13.33 8.98 -34.44 -0.31 -13.64 16 13 H 0.07 1.82 7.90 -52.48 -0.41 1.40 16 14 C 0.07 1.95 5.06 -17.82 -0.09 1.86 16 15 N -0.88 -23.92 11.08 55.43 0.61 -23.31 16 16 Si 0.89 21.20 29.59 -169.99 -5.03 16.17 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.19 -4.30 9.88 -26.73 -0.26 -4.57 16 21 C -0.20 -4.45 9.94 -26.74 -0.27 -4.72 16 22 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 24 H 0.05 0.69 8.11 -51.92 -0.42 0.27 16 25 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.15 2.55 6.47 -52.48 -0.34 2.21 16 28 H 0.03 0.57 7.53 -51.93 -0.39 0.18 16 29 H 0.12 2.93 4.96 -51.93 -0.26 2.68 16 30 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 31 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 32 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 LS Contribution 294.83 15.07 4.44 4.44 Total: -1.00 -29.78 294.83 -6.48 -36.26 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.34 Total: 2.56 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.37 Total: -14.19 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.49 Total: -32.13 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.68 Total: -13.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.78 -6.48 -36.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596268882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.180 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds