Wall clock time and date at job start Mon Mar 30 2020 18:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 O 1.42904 * 109.46786 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47370 * 120.00356 * 2 1 3 6 6 C 1.34780 * 119.99550 * 299.99574 * 5 2 1 7 7 O 1.21681 * 120.00236 * 0.02562 * 6 5 2 8 8 C 1.46376 * 119.99664 * 179.97438 * 6 5 2 9 9 H 1.08004 * 120.00236 * 0.02562 * 8 6 5 10 10 C 1.40046 * 119.99830 * 180.02562 * 8 6 5 11 11 N 1.30675 * 120.00311 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 120.00243 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47453 * 89.99434 * 12 10 8 14 14 H 1.48500 * 109.47618 * 209.99685 * 12 10 8 15 15 H 1.48503 * 109.47101 * 329.99871 * 12 10 8 16 16 C 1.50706 * 109.47383 * 240.00345 * 2 1 3 17 17 C 1.38237 * 119.99744 * 270.00236 * 16 2 1 18 18 C 1.38235 * 119.99712 * 180.02562 * 17 16 2 19 19 C 1.38234 * 120.00220 * 359.94731 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00223 * 90.01446 * 16 2 1 22 22 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47313 * 299.99349 * 1 2 3 24 24 H 1.09000 * 109.47547 * 59.99968 * 1 2 3 25 25 H 1.08996 * 109.47399 * 300.00011 * 3 2 1 26 26 H 1.09001 * 109.47328 * 60.00432 * 3 2 1 27 27 H 0.96704 * 113.99357 * 180.02562 * 4 3 2 28 28 H 0.96996 * 120.00154 * 120.00278 * 5 2 1 29 29 H 0.96998 * 120.00627 * 180.02562 * 11 10 8 30 30 H 1.08005 * 120.00088 * 359.97438 * 17 16 2 31 31 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 33 33 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 34 34 H 1.07998 * 119.99975 * 0.02562 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 7 2.0183 -0.6907 1.1961 6 6 1.6928 -0.2302 2.4202 7 8 0.9929 0.7589 2.5319 8 6 2.1803 -0.9205 3.6153 9 1 2.8012 -1.7987 3.5162 10 6 1.8416 -0.4424 4.8873 11 7 1.0908 0.6204 5.0073 12 14 2.4642 -1.3229 6.4125 13 1 3.7722 -0.7477 6.8170 14 1 1.4859 -1.1525 7.5167 15 1 2.6297 -2.7687 6.1165 16 6 2.0323 -0.7103 -1.2305 17 6 2.2627 -2.0730 -1.1963 18 6 2.7240 -2.7244 -2.3249 19 6 2.9540 -2.0135 -3.4879 20 6 2.7283 -0.6502 -3.5207 21 6 2.2631 0.0007 -2.3933 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 3.8622 2.3260 -0.0002 28 1 2.5760 -1.4793 1.1071 29 1 0.8565 0.9518 5.8883 30 1 2.0830 -2.6284 -0.2876 31 1 2.9044 -3.7889 -2.2980 32 1 3.3140 -2.5227 -4.3697 33 1 2.9121 -0.0940 -4.4280 34 1 2.0837 1.0653 -2.4199 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597841090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:05 Heat of formation + Delta-G solvation = -83.942907 kcal Electronic energy + Delta-G solvation = -18447.896218 eV Core-core repulsion = 15537.713077 eV Total energy + Delta-G solvation = -2910.183141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09481 -39.16625 -37.52904 -35.71121 -34.48066 -32.52269 -31.59056 -30.38811 -28.14055 -27.05025 -24.39199 -23.24530 -22.10194 -20.21340 -19.51402 -18.23430 -17.95984 -17.20627 -16.60924 -16.09370 -15.72663 -15.42519 -15.18358 -14.78787 -14.53836 -14.34604 -13.97213 -13.66477 -13.27311 -13.13443 -13.02272 -12.95397 -12.65091 -12.56319 -12.47314 -12.02423 -11.83730 -11.46500 -10.97643 -10.82706 -9.75800 -9.69305 -9.57025 -9.28063 -8.24156 -6.80636 0.50903 0.56678 1.39280 1.40481 1.54900 2.25289 2.51995 2.90956 3.09488 3.40268 3.68170 3.69405 4.04826 4.18189 4.30128 4.31927 4.44337 4.57918 4.67933 4.70465 4.80175 4.83597 5.01221 5.13282 5.22010 5.32577 5.38118 5.63497 5.66642 5.73934 5.91872 6.17235 6.25328 6.38924 6.90216 6.91337 7.60075 8.55084 8.73054 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032800 B = 0.006291 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.457897 B = 4449.874021 C = 4813.604639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.221 3.779 3 C 0.073 3.927 4 O -0.574 6.574 5 N -0.741 5.741 6 C 0.550 3.450 7 O -0.613 6.613 8 C -0.578 4.578 9 H 0.076 0.924 10 C 0.034 3.966 11 N -0.818 5.818 12 Si 0.991 3.009 13 H -0.264 1.264 14 H -0.271 1.271 15 H -0.253 1.253 16 C -0.078 4.078 17 C -0.135 4.135 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.116 4.116 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.385 0.615 28 H 0.386 0.614 29 H 0.273 0.727 30 H 0.113 0.887 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -3.777 -14.694 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.134 3.866 3 C -0.006 4.006 4 O -0.380 6.380 5 N -0.395 5.395 6 C 0.354 3.646 7 O -0.499 6.499 8 C -0.615 4.615 9 H 0.095 0.905 10 C -0.181 4.181 11 N -0.448 5.448 12 Si 0.811 3.189 13 H -0.189 1.189 14 H -0.196 1.196 15 H -0.176 1.176 16 C -0.079 4.079 17 C -0.153 4.153 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.138 4.138 21 C -0.134 4.134 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.232 0.768 28 H 0.220 0.780 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.027 -3.580 -14.518 15.256 hybrid contribution 0.348 0.212 1.058 1.134 sum 3.375 -3.368 -13.460 14.280 Atomic orbital electron populations 1.22036 0.94036 1.02000 1.02368 1.18954 0.93171 0.90490 0.83980 1.22549 0.81242 0.97005 0.99761 1.86473 1.19567 1.34232 1.97690 1.45946 1.56557 1.32634 1.04328 1.18324 0.79708 0.83779 0.82834 1.90476 1.43144 1.29550 1.86780 1.21407 1.34666 1.14549 0.90849 0.90537 1.26815 0.92962 0.94678 1.03615 1.70160 1.28730 1.20640 1.25282 0.85114 0.78489 0.79384 0.75885 1.18870 1.19614 1.17622 1.19802 0.99479 0.94332 0.94260 1.21101 1.00803 0.94049 0.99359 1.21377 0.98903 1.00953 0.92628 1.21490 0.99900 0.94442 0.98586 1.21430 0.98757 0.95220 0.98348 1.21124 0.99661 1.00121 0.92505 0.92694 0.93069 0.90367 0.91474 0.94766 0.76761 0.77958 0.91724 0.86878 0.83991 0.83213 0.83399 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 8.38 71.98 0.60 -5.21 16 2 C 0.22 8.87 0.68 2.86 0.00 8.87 16 3 C 0.07 2.88 5.13 71.98 0.37 3.25 16 4 O -0.57 -21.63 12.91 -148.98 -1.92 -23.56 16 5 N -0.74 -34.99 4.72 -430.57 -2.03 -37.02 16 6 C 0.55 31.98 7.17 86.36 0.62 32.59 16 7 O -0.61 -39.34 11.22 -4.29 -0.05 -39.38 16 8 C -0.58 -33.63 9.54 24.83 0.24 -33.39 16 9 H 0.08 4.11 7.85 -2.91 -0.02 4.08 16 10 C 0.03 1.95 5.50 85.30 0.47 2.42 16 11 N -0.82 -50.11 11.83 21.84 0.26 -49.85 16 12 Si 0.99 41.97 29.56 68.60 2.03 43.99 16 13 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 14 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 15 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 16 C -0.08 -2.60 4.51 -19.86 -0.09 -2.69 16 17 C -0.13 -4.15 8.96 22.27 0.20 -3.95 16 18 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 19 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 20 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 21 C -0.12 -3.21 8.92 22.27 0.20 -3.01 16 22 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.05 2.46 6.16 -2.39 -0.01 2.44 16 24 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.07 2.13 6.51 -2.39 -0.02 2.11 16 26 H 0.03 1.66 6.16 -2.39 -0.01 1.65 16 27 H 0.38 10.83 9.12 -74.05 -0.68 10.16 16 28 H 0.39 17.00 6.65 -92.71 -0.62 16.38 16 29 H 0.27 15.17 8.29 -92.71 -0.77 14.41 16 30 H 0.11 3.62 6.71 -2.91 -0.02 3.60 16 31 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.13 3.20 6.17 -2.91 -0.02 3.19 16 Total: -1.00 -75.91 284.55 1.41 -74.50 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.15 Total: 39.96 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 3.28 Total: -8.64 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -1.77 Total: -86.87 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -1.97 Total: -62.94 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -75.91 1.41 -74.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597841090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.444 kcal (2) G-P(sol) polarization free energy of solvation -75.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds