Wall clock time and date at job start Mon Mar 30 2020 18:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47280 * 2 1 4 4 C 1.50709 * 109.46741 * 119.99330 * 2 1 3 5 5 O 1.21289 * 119.99602 * 120.00134 * 4 2 1 6 6 N 1.34768 * 120.00017 * 300.00261 * 4 2 1 7 7 C 1.37099 * 120.00026 * 180.02562 * 6 4 2 8 8 H 1.08001 * 120.00114 * 224.17893 * 7 6 4 9 9 C 1.38947 * 120.00061 * 44.18213 * 7 6 4 10 10 N 1.31417 * 119.99940 * 18.06191 * 9 7 6 11 11 Si 1.86796 * 120.00046 * 198.05939 * 9 7 6 12 12 H 1.48495 * 109.47454 * 269.99662 * 11 9 7 13 13 H 1.48496 * 109.47128 * 30.00337 * 11 9 7 14 14 H 1.48509 * 109.47025 * 149.99775 * 11 9 7 15 15 C 1.46505 * 120.00111 * 359.97438 * 6 4 2 16 16 C 1.53002 * 117.50113 * 189.27928 * 15 6 4 17 17 C 1.53006 * 117.49500 * 120.62455 * 15 6 4 18 18 C 1.50700 * 109.47345 * 239.99227 * 2 1 3 19 19 C 1.34510 * 125.78501 * 119.71915 * 18 2 1 20 20 C 1.41380 * 106.83953 * 179.88728 * 19 18 2 21 21 C 1.34520 * 106.83959 * 0.37318 * 20 19 18 22 22 O 1.34294 * 108.41791 * 359.76903 * 21 20 19 23 23 H 1.08995 * 109.47785 * 300.00518 * 1 2 3 24 24 H 1.09001 * 109.46933 * 60.00830 * 1 2 3 25 25 H 1.09005 * 109.46815 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99931 * 174.90292 * 10 9 7 27 27 H 1.08999 * 115.54910 * 334.95537 * 15 6 4 28 28 H 1.09005 * 117.49938 * 0.02562 * 16 15 6 29 29 H 1.08998 * 117.49842 * 145.01657 * 16 15 6 30 30 H 1.09003 * 117.49774 * 214.98092 * 17 15 6 31 31 H 1.08997 * 117.50034 * 359.97438 * 17 15 6 32 32 H 1.08001 * 126.58460 * 0.02606 * 19 18 2 33 33 H 1.08006 * 126.58199 * 180.16223 * 20 19 18 34 34 H 1.08005 * 125.78519 * 179.75133 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.1639 -0.8956 3.5741 8 1 1.4957 -1.0795 4.4024 9 6 3.4872 -1.3137 3.6431 10 7 4.3818 -0.8006 2.8285 11 14 3.9948 -2.6049 4.8939 12 1 4.3995 -1.9380 6.1575 13 1 2.8510 -3.5143 5.1584 14 1 5.1374 -3.3890 4.3601 15 6 0.8648 0.9417 2.5889 16 6 0.7081 1.5422 3.9874 17 6 -0.4586 0.7905 3.3419 18 6 2.0324 -0.7106 -1.2303 19 6 2.8046 -0.1706 -2.1903 20 6 3.0380 -1.1850 -3.1470 21 6 2.3876 -2.2818 -2.7186 22 8 1.7804 -1.9885 -1.5573 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 5.3176 -1.0368 2.9250 27 1 0.8877 1.6311 1.7448 28 1 1.2318 1.0510 4.8076 29 1 0.6278 2.6266 4.0634 30 1 -1.3062 1.3806 2.9934 31 1 -0.7030 -0.1955 3.7369 32 1 3.1770 0.8427 -2.2228 33 1 3.6232 -1.0955 -4.0504 34 1 2.3585 -3.2363 -3.2233 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610173815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:19 Heat of formation + Delta-G solvation = 24.468873 kcal Electronic energy + Delta-G solvation = -18757.162167 eV Core-core repulsion = 15851.680114 eV Total energy + Delta-G solvation = -2905.482054 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.01355 -38.78173 -36.09683 -33.63266 -32.62915 -32.26684 -30.71591 -28.12437 -25.18726 -23.66295 -21.73228 -21.31039 -21.07359 -20.39879 -19.04423 -16.87382 -16.31492 -16.04920 -15.30149 -14.85800 -14.38239 -13.90673 -13.84698 -13.52817 -12.77266 -12.68612 -12.29588 -12.22993 -12.17022 -11.38407 -11.34703 -11.07332 -10.90528 -10.86827 -10.81125 -10.50300 -10.15607 -9.89910 -9.69300 -9.39080 -8.70348 -8.07864 -7.82122 -6.99761 -6.09702 -3.85404 2.31461 3.11628 3.29946 3.40312 3.42392 3.57053 4.11264 4.27249 4.75000 4.83754 5.11782 5.23393 5.45969 5.48744 5.56222 5.56494 5.68336 5.73057 5.84795 5.95687 6.15478 6.19532 6.22483 6.31871 6.36007 6.45067 6.55750 6.66413 6.77222 6.95475 7.00791 7.63260 7.73009 8.28394 9.06456 9.16945 9.66459 10.29256 10.99401 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.009308 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.845631 B = 3007.566746 C = 3996.101196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.034 4.034 3 H 0.105 0.895 4 C 0.489 3.511 5 O -0.519 6.519 6 N -0.426 5.426 7 C -0.349 4.349 8 H 0.078 0.922 9 C 0.073 3.927 10 N -0.833 5.833 11 Si 0.912 3.088 12 H -0.282 1.282 13 H -0.271 1.271 14 H -0.284 1.284 15 C 0.074 3.926 16 C -0.177 4.177 17 C -0.208 4.208 18 C 0.049 3.951 19 C -0.229 4.229 20 C -0.215 4.215 21 C -0.055 4.055 22 O -0.158 6.158 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.264 0.736 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.692 3.980 -6.380 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.056 4.056 3 H 0.123 0.877 4 C 0.275 3.725 5 O -0.395 6.395 6 N -0.147 5.147 7 C -0.476 4.476 8 H 0.095 0.905 9 C -0.138 4.138 10 N -0.466 5.466 11 Si 0.739 3.261 12 H -0.208 1.208 13 H -0.196 1.196 14 H -0.210 1.210 15 C -0.032 4.032 16 C -0.215 4.215 17 C -0.247 4.247 18 C -0.003 4.003 19 C -0.248 4.248 20 C -0.235 4.235 21 C -0.123 4.123 22 O -0.052 6.052 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.282 3.183 -6.371 9.497 hybrid contribution 0.667 -0.354 0.381 0.846 sum -5.615 2.829 -5.990 8.684 Atomic orbital electron populations 1.22004 0.92793 1.03170 1.02725 1.19983 0.97083 0.98763 0.89798 0.87683 1.19484 0.84087 0.85867 0.83074 1.90565 1.37173 1.26776 1.84992 1.42687 1.45517 1.21697 1.04758 1.18821 0.94069 1.37993 0.96675 0.90478 1.25246 0.95668 0.96697 0.96146 1.69819 1.01419 1.39673 1.35654 0.86215 0.78474 0.81649 0.79762 1.20841 1.19591 1.20990 1.21764 0.94355 0.92011 0.95078 1.23128 1.01778 0.98212 0.98345 1.23343 0.92329 1.02074 1.06952 1.21840 0.99945 0.81938 0.96559 1.21423 1.05338 1.01258 0.96774 1.21652 1.05701 0.93859 1.02261 1.23851 1.00463 1.00446 0.87518 1.84041 1.58765 1.28004 1.34428 0.89985 0.92563 0.92077 0.92588 0.87692 0.87457 0.89848 0.89743 0.88977 0.84063 0.84149 0.78867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.79 37.16 0.33 -2.12 16 2 C -0.03 -0.69 2.34 -92.92 -0.22 -0.91 16 3 H 0.11 1.91 7.53 -51.93 -0.39 1.52 16 4 C 0.49 12.58 6.36 -10.99 -0.07 12.51 16 5 O -0.52 -15.78 13.55 -1.24 -0.02 -15.80 16 6 N -0.43 -10.59 2.85 -107.72 -0.31 -10.90 16 7 C -0.35 -9.54 7.72 -14.93 -0.12 -9.66 16 8 H 0.08 2.04 7.53 -52.49 -0.40 1.64 16 9 C 0.07 2.08 4.39 -17.47 -0.08 2.00 16 10 N -0.83 -25.03 11.72 55.50 0.65 -24.38 16 11 Si 0.91 22.25 29.59 -169.99 -5.03 17.22 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.07 1.44 4.32 -67.92 -0.29 1.15 16 16 C -0.18 -3.13 9.82 -26.69 -0.26 -3.39 16 17 C -0.21 -3.44 9.48 -26.69 -0.25 -3.70 16 18 C 0.05 1.00 5.20 -35.63 -0.19 0.82 16 19 C -0.23 -4.20 10.78 -39.70 -0.43 -4.62 16 20 C -0.22 -3.54 10.91 -39.70 -0.43 -3.98 16 21 C -0.05 -0.92 12.09 29.42 0.36 -0.56 16 22 O -0.16 -3.29 10.35 -1.04 -0.01 -3.30 16 23 H 0.08 1.26 4.44 -51.93 -0.23 1.03 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.26 7.63 8.32 -40.82 -0.34 7.29 16 27 H 0.11 1.79 6.13 -51.93 -0.32 1.47 16 28 H 0.11 2.13 6.91 -51.93 -0.36 1.78 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 33 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.19 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 287.31 15.07 4.33 4.33 Total: -1.00 -34.30 287.31 -6.25 -40.55 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.21 Total: 4.74 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.65 Total: -12.47 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.34 Total: -35.27 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.03 Total: -19.10 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.30 -6.25 -40.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610173815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.019 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds