Wall clock time and date at job start Mon Mar 30 2020 18:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47426 * 2 1 4 4 N 1.46505 * 109.46930 * 305.00110 * 3 2 1 5 5 C 1.36931 * 119.99788 * 299.99848 * 4 3 2 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 3 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 3 8 8 N 1.31617 * 119.99873 * 180.27450 * 7 5 4 9 9 Si 1.86800 * 120.00209 * 0.27770 * 7 5 4 10 10 H 1.48498 * 109.47118 * 89.99559 * 9 7 5 11 11 H 1.48499 * 109.47134 * 210.00079 * 9 7 5 12 12 H 1.48507 * 109.46904 * 329.99901 * 9 7 5 13 13 C 1.50692 * 109.47481 * 185.00175 * 3 2 1 14 14 O 1.20829 * 119.99561 * 334.99875 * 13 3 2 15 15 O 1.34228 * 120.00524 * 154.99887 * 13 3 2 16 16 C 1.50705 * 109.47135 * 64.99654 * 3 2 1 17 17 C 1.38240 * 119.99671 * 29.73103 * 16 3 2 18 18 C 1.38235 * 119.99548 * 179.80746 * 17 16 3 19 19 C 1.38231 * 119.99999 * 0.39519 * 18 17 16 20 20 C 1.38229 * 120.00471 * 359.86273 * 19 18 17 21 21 C 1.38236 * 119.99913 * 359.94624 * 20 19 18 22 22 H 1.09003 * 109.46841 * 300.00084 * 1 2 3 23 23 H 1.08995 * 109.47126 * 59.99541 * 1 2 3 24 24 H 1.08995 * 109.47243 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47043 * 239.99594 * 2 1 3 26 26 H 1.09004 * 109.47028 * 120.00230 * 2 1 3 27 27 H 0.97000 * 119.99792 * 119.99643 * 4 3 2 28 28 H 0.97000 * 120.00553 * 180.02562 * 8 7 5 29 29 H 0.96693 * 117.00035 * 179.97438 * 15 13 3 30 30 H 1.07996 * 120.00292 * 359.97438 * 17 16 3 31 31 H 1.07999 * 119.99553 * 180.23337 * 18 17 16 32 32 H 1.08008 * 119.99812 * 179.83194 * 19 18 17 33 33 H 1.08001 * 120.00462 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.00102 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4559 2.1670 -1.1315 5 6 1.6829 1.7358 -2.4112 6 1 2.2921 0.8615 -2.5864 7 6 1.1246 2.4190 -3.4829 8 7 1.3383 2.0014 -4.7127 9 14 0.0703 3.9309 -3.1799 10 1 0.9302 5.1415 -3.1766 11 1 -0.9467 4.0489 -4.2555 12 1 -0.6109 3.8041 -1.8664 13 6 3.5419 1.4443 -0.1239 14 8 4.1792 0.4842 0.2395 15 8 4.1718 2.5124 -0.6378 16 6 1.6414 2.1163 1.2877 17 6 1.5010 1.3707 2.4433 18 6 1.1391 1.9894 3.6253 19 6 0.9097 3.3523 3.6499 20 6 1.0449 4.0971 2.4933 21 6 1.4107 3.4791 1.3121 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 0.9084 2.9520 -0.9740 28 1 0.9486 2.4789 -5.4617 29 1 5.1359 2.4672 -0.6968 30 1 1.6766 0.3053 2.4232 31 1 1.0331 1.4074 4.5289 32 1 0.6244 3.8353 4.5729 33 1 0.8653 5.1619 2.5125 34 1 1.5167 4.0610 0.4085 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736919252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:33 Heat of formation + Delta-G solvation = -45.995844 kcal Electronic energy + Delta-G solvation = -18885.651429 eV Core-core repulsion = 15977.113796 eV Total energy + Delta-G solvation = -2908.537633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30300 -38.71385 -36.09611 -35.34012 -32.74412 -31.20177 -30.27582 -30.04705 -26.79830 -23.62956 -22.41888 -22.16979 -21.77810 -18.96399 -18.26319 -17.33216 -16.57383 -16.10715 -15.33326 -14.87395 -14.47264 -14.18439 -13.86212 -13.60797 -13.33219 -12.87374 -12.74823 -12.33273 -12.17396 -11.60879 -11.30219 -11.21072 -11.03577 -10.90163 -10.73398 -10.53557 -10.36608 -10.12953 -9.98270 -9.63686 -9.11768 -8.75421 -8.56118 -7.48112 -5.88753 -3.27431 1.43634 1.55757 2.92527 3.30136 3.33063 3.39172 3.70190 4.07778 4.48488 4.84536 4.96634 5.11304 5.19142 5.30238 5.34958 5.61993 5.66052 5.76233 5.84149 5.95757 6.10504 6.18384 6.25352 6.34911 6.49745 6.57700 6.64064 6.79032 6.86709 7.03385 7.12057 7.19479 7.79212 8.26821 8.64115 9.02308 9.73835 9.90709 11.28231 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.009704 C = 0.008444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.904732 B = 2884.777653 C = 3315.153858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.259 3.741 4 N -0.718 5.718 5 C -0.248 4.248 6 H 0.091 0.909 7 C 0.018 3.982 8 N -0.923 5.923 9 Si 0.878 3.122 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.274 1.274 13 C 0.482 3.518 14 O -0.542 6.542 15 O -0.492 6.492 16 C -0.076 4.076 17 C -0.104 4.104 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.101 4.101 22 H 0.045 0.955 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.370 0.630 28 H 0.262 0.738 29 H 0.389 0.611 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 2.095 14.840 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.164 3.836 4 N -0.362 5.362 5 C -0.377 4.377 6 H 0.109 0.891 7 C -0.179 4.179 8 N -0.569 5.569 9 Si 0.707 3.293 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.323 3.677 14 O -0.432 6.432 15 O -0.300 6.300 16 C -0.076 4.076 17 C -0.122 4.122 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.119 4.119 22 H 0.064 0.936 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.206 0.794 28 H 0.072 0.928 29 H 0.246 0.754 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.036 1.757 14.693 14.834 hybrid contribution -0.005 1.067 -0.116 1.073 sum -1.041 2.824 14.577 14.885 Atomic orbital electron populations 1.21670 0.94770 1.00663 1.02735 1.21752 0.96849 0.94027 1.02320 1.18269 0.84679 0.93987 0.86644 1.42824 1.59581 1.32131 1.01680 1.18890 1.27283 1.11029 0.80537 0.89114 1.24607 0.99846 0.98547 0.94913 1.69692 1.48249 1.41415 0.97548 0.86661 0.80770 0.84394 0.77433 1.20669 1.21499 1.19992 1.25175 0.92768 0.78918 0.70879 1.90593 1.68630 1.35926 1.48009 1.84743 1.25919 1.43533 1.75823 1.19721 0.99980 0.93897 0.94046 1.21187 0.98714 1.00374 0.91948 1.21082 1.00659 0.94848 0.97703 1.21121 1.00588 0.94300 0.98067 1.21118 1.00429 0.99831 0.92746 1.21139 0.98016 0.94318 0.98449 0.93585 0.90618 0.93511 0.90739 0.91883 0.79402 0.92778 0.75447 0.85264 0.86121 0.86363 0.86090 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.45 37.16 0.35 -2.10 16 2 C -0.11 -2.07 3.74 -26.73 -0.10 -2.17 16 3 C 0.26 5.12 0.64 -134.12 -0.09 5.04 16 4 N -0.72 -16.17 3.52 -49.39 -0.17 -16.35 16 5 C -0.25 -6.63 9.03 -15.06 -0.14 -6.76 16 6 H 0.09 2.67 7.49 -52.49 -0.39 2.27 16 7 C 0.02 0.50 5.50 -17.43 -0.10 0.41 16 8 N -0.92 -27.93 13.97 55.49 0.78 -27.15 16 9 Si 0.88 21.08 27.74 -169.99 -4.72 16.37 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.14 6.51 56.52 0.37 -5.77 16 13 C 0.48 10.00 6.56 36.00 0.24 10.23 16 14 O -0.54 -11.82 16.95 -18.75 -0.32 -12.14 16 15 O -0.49 -9.51 13.04 -39.25 -0.51 -10.02 16 16 C -0.08 -1.30 4.10 -104.62 -0.43 -1.73 16 17 C -0.10 -1.54 8.17 -39.58 -0.32 -1.86 16 18 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 19 C -0.12 -1.48 10.05 -39.59 -0.40 -1.88 16 20 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 21 C -0.10 -1.64 8.96 -39.58 -0.35 -2.00 16 22 H 0.05 0.73 6.64 -51.93 -0.34 0.39 16 23 H 0.07 1.51 7.31 -51.93 -0.38 1.14 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.56 7.45 -51.93 -0.39 1.18 16 26 H 0.06 1.07 6.11 -51.93 -0.32 0.75 16 27 H 0.37 8.18 3.72 -40.82 -0.15 8.03 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.39 5.61 9.10 45.56 0.41 6.02 16 30 H 0.13 1.81 6.04 -52.49 -0.32 1.49 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 2.20 6.71 -52.49 -0.35 1.85 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -31.75 283.44 -5.89 -37.64 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -3.09 Total: 14.20 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.13 Total: -6.82 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.60 Total: -43.50 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.83 Total: -22.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.72 Total: 16.37 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.75 -5.89 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736919252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.357 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds