Wall clock time and date at job start Mon Mar 30 2020 18:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41598 * 113.99842 * 2 1 4 4 C 1.46501 * 120.00476 * 270.00102 * 3 2 1 5 5 C 1.34784 * 119.99556 * 90.00597 * 3 2 1 6 6 O 1.21280 * 119.99871 * 180.02562 * 5 3 2 7 7 C 1.50701 * 119.99906 * 359.97438 * 5 3 2 8 8 C 1.50700 * 109.46813 * 180.02562 * 7 5 3 9 9 C 1.37640 * 120.13180 * 265.30632 * 8 7 5 10 10 C 1.38613 * 120.24862 * 180.32332 * 9 8 7 11 11 C 1.38655 * 120.50174 * 359.67182 * 10 9 8 12 12 C 1.37598 * 120.24576 * 359.97438 * 11 10 9 13 13 C 1.40702 * 120.12495 * 85.00356 * 8 7 5 14 14 C 1.41393 * 120.24620 * 359.97406 * 13 8 7 15 15 H 1.08002 * 119.99656 * 29.07923 * 14 13 8 16 16 C 1.39942 * 120.00167 * 209.08018 * 14 13 8 17 17 N 1.30825 * 120.00009 * 197.09316 * 16 14 13 18 18 Si 1.86794 * 120.00079 * 17.09316 * 16 14 13 19 19 H 1.48503 * 109.47475 * 270.00377 * 18 16 14 20 20 H 1.48503 * 109.47050 * 30.00126 * 18 16 14 21 21 H 1.48504 * 109.47360 * 150.00027 * 18 16 14 22 22 H 1.08996 * 109.47185 * 299.99149 * 1 2 3 23 23 H 1.08997 * 109.47543 * 59.99725 * 1 2 3 24 24 H 1.09007 * 109.46742 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46899 * 270.00078 * 4 3 2 26 26 H 1.08995 * 109.46783 * 30.00391 * 4 3 2 27 27 H 1.09000 * 109.46921 * 150.00353 * 4 3 2 28 28 H 1.08999 * 109.47299 * 60.00523 * 7 5 3 29 29 H 1.08998 * 109.47401 * 299.99992 * 7 5 3 30 30 H 1.08005 * 119.87130 * 0.02562 * 9 8 7 31 31 H 1.08001 * 119.74473 * 179.69460 * 10 9 8 32 32 H 1.08002 * 119.87493 * 180.02562 * 11 10 9 33 33 H 1.08003 * 120.12022 * 180.02562 * 12 11 10 34 34 H 0.97001 * 119.99850 * 355.46872 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9629 -1.2687 5 6 2.2790 1.9091 1.1673 6 8 2.7719 3.0173 1.1674 7 6 1.9721 1.2208 2.4724 8 6 2.3700 2.1156 3.6178 9 6 3.6062 1.9756 4.2067 10 6 3.9721 2.7929 5.2648 11 6 3.1024 3.7636 5.7378 12 6 1.8644 3.9262 5.1596 13 6 1.4817 3.1015 4.0853 14 6 0.2119 3.2591 3.4836 15 1 -0.2800 2.4110 3.0308 16 6 -0.4073 4.5140 3.4749 17 7 -1.6896 4.6091 3.2333 18 14 0.5968 6.0535 3.8082 19 1 0.5961 6.3392 5.2655 20 1 1.9924 5.8439 3.3457 21 1 0.0006 7.2012 3.0785 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 3.3155 1.7109 -1.5833 26 1 1.5938 1.6338 -2.0283 27 1 2.2208 3.0419 -1.1382 28 1 2.5300 0.2862 2.5302 29 1 0.9041 1.0107 2.5300 30 1 4.2918 1.2230 3.8461 31 1 4.9422 2.6727 5.7241 32 1 3.3981 4.3951 6.5625 33 1 1.1887 4.6832 5.5293 34 1 -2.1982 3.8181 2.9956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777291682.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:52 Heat of formation + Delta-G solvation = -12.413663 kcal Electronic energy + Delta-G solvation = -18529.921408 eV Core-core repulsion = 15622.840008 eV Total energy + Delta-G solvation = -2907.081400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.45794 -37.78257 -36.88250 -33.65777 -32.68342 -31.87961 -30.14257 -27.98162 -26.86620 -25.32207 -24.23766 -21.38426 -20.37431 -19.39664 -18.09947 -17.07891 -16.51170 -15.94979 -15.30742 -14.67277 -14.23384 -14.10865 -13.88437 -13.71996 -13.53728 -12.81140 -12.56188 -12.41715 -12.12492 -11.94048 -11.69960 -11.24780 -11.20271 -10.77637 -10.48071 -10.26893 -10.12943 -9.68986 -9.29804 -9.25621 -8.95518 -8.71052 -7.64594 -7.56949 -7.17453 -4.49607 2.13657 2.65339 2.77211 3.14409 3.27082 3.44617 3.67261 4.10269 4.38076 4.65399 5.25111 5.33614 5.36804 5.39673 5.53703 5.61311 5.72145 5.85729 5.89475 5.96646 6.11869 6.23383 6.28428 6.56066 6.67242 6.77518 7.08240 7.37191 7.51763 7.67625 7.71807 7.78371 7.87332 8.03282 8.40907 8.61423 8.61683 8.82017 10.07991 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019146 B = 0.009703 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.090023 B = 2884.903450 C = 3610.377853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.147 6.147 3 N -0.494 5.494 4 C 0.088 3.912 5 C 0.530 3.470 6 O -0.499 6.499 7 C -0.064 4.064 8 C -0.175 4.175 9 C -0.067 4.067 10 C -0.244 4.244 11 C -0.076 4.076 12 C -0.244 4.244 13 C 0.115 3.885 14 C -0.515 4.515 15 H 0.073 0.927 16 C 0.047 3.953 17 N -0.824 5.824 18 Si 1.070 2.930 19 H -0.279 1.279 20 H -0.258 1.258 21 H -0.293 1.293 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 -6.514 -5.749 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 O -0.151 6.151 3 N -0.277 5.277 4 C -0.053 4.053 5 C 0.321 3.679 6 O -0.371 6.371 7 C -0.103 4.103 8 C -0.177 4.177 9 C -0.085 4.085 10 C -0.263 4.263 11 C -0.094 4.094 12 C -0.263 4.263 13 C 0.112 3.888 14 C -0.544 4.544 15 H 0.091 0.909 16 C -0.171 4.171 17 N -0.447 5.447 18 Si 0.896 3.104 19 H -0.206 1.206 20 H -0.182 1.182 21 H -0.220 1.220 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.121 0.879 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.481 -4.451 -5.607 7.960 hybrid contribution -0.488 -1.858 -0.354 1.953 sum 2.993 -6.309 -5.961 9.181 Atomic orbital electron populations 1.23376 0.82027 1.03410 1.01797 1.90567 1.19868 1.07833 1.96831 1.50278 1.60311 1.10275 1.06844 1.21784 1.00762 0.98317 0.84425 1.21272 0.76948 0.85337 0.84360 1.90731 1.42684 1.18260 1.85436 1.20213 1.02824 0.97592 0.89688 1.19089 0.95402 1.03700 0.99474 1.20451 0.94751 0.97694 0.95622 1.20345 0.99933 1.02747 1.03259 1.20614 0.94108 0.96728 0.97947 1.21128 0.98188 1.06014 1.00973 1.17511 0.91905 0.89781 0.89575 1.20504 1.01956 0.97190 1.34754 0.90933 1.27158 0.95526 1.03156 0.91287 1.70581 1.06492 1.35493 1.32109 0.83651 0.76681 0.73206 0.76822 1.20565 1.18184 1.22036 0.92326 0.93179 0.87918 0.92246 0.91258 0.89602 0.89891 0.89109 0.89039 0.88907 0.88813 0.87745 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.44 101.05 1.16 1.06 16 2 O -0.15 -2.22 10.84 -11.47 -0.12 -2.34 16 3 N -0.49 -8.54 3.36 -67.08 -0.23 -8.76 16 4 C 0.09 1.23 10.82 59.85 0.65 1.88 16 5 C 0.53 11.14 7.75 -10.98 -0.09 11.05 16 6 O -0.50 -12.27 15.61 5.56 0.09 -12.19 16 7 C -0.06 -1.31 4.66 -29.03 -0.14 -1.44 16 8 C -0.18 -4.16 4.43 -103.91 -0.46 -4.62 16 9 C -0.07 -1.48 9.66 -39.66 -0.38 -1.87 16 10 C -0.24 -5.31 10.05 -39.29 -0.39 -5.71 16 11 C -0.08 -1.72 10.02 -39.66 -0.40 -2.11 16 12 C -0.24 -6.13 7.26 -38.87 -0.28 -6.41 16 13 C 0.12 3.00 5.13 -106.83 -0.55 2.45 16 14 C -0.52 -13.85 8.80 -37.74 -0.33 -14.18 16 15 H 0.07 1.95 6.60 -52.49 -0.35 1.60 16 16 C 0.05 1.27 5.42 -17.34 -0.09 1.18 16 17 N -0.82 -22.44 13.65 55.55 0.76 -21.68 16 18 Si 1.07 25.99 24.89 -169.99 -4.23 21.75 16 19 H -0.28 -6.35 6.45 56.52 0.36 -5.99 16 20 H -0.26 -6.51 7.02 56.52 0.40 -6.11 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H 0.06 0.84 7.13 -51.93 -0.37 0.47 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 1.31 7.42 -51.93 -0.39 0.92 16 28 H 0.08 1.48 8.06 -51.93 -0.42 1.07 16 29 H 0.09 1.85 5.49 -51.93 -0.29 1.56 16 30 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 31 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.10 2.60 4.43 -52.48 -0.23 2.36 16 34 H 0.28 7.40 8.73 -40.82 -0.36 7.04 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -30.82 288.97 -4.88 -35.70 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.19 Total: 1.88 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.31 Total: -18.72 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.53 Total: -30.45 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.04 Total: -14.53 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -4.23 Total: 21.75 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.82 -4.88 -35.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777291682.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.290 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds