Wall clock time and date at job start Mon Mar 30 2020 18:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41598 * 113.99842 * 2 1 4 4 C 1.46501 * 120.00476 * 270.00102 * 3 2 1 5 5 C 1.34784 * 119.99556 * 90.00597 * 3 2 1 6 6 O 1.21280 * 119.99871 * 180.02562 * 5 3 2 7 7 C 1.50701 * 119.99906 * 359.97438 * 5 3 2 8 8 C 1.50700 * 109.46813 * 180.02562 * 7 5 3 9 9 C 1.37640 * 120.13180 * 265.30632 * 8 7 5 10 10 C 1.38613 * 120.24862 * 180.32332 * 9 8 7 11 11 C 1.38655 * 120.50174 * 359.67182 * 10 9 8 12 12 C 1.37598 * 120.24576 * 359.97438 * 11 10 9 13 13 C 1.40702 * 120.12495 * 85.00356 * 8 7 5 14 14 C 1.41393 * 120.24620 * 359.97406 * 13 8 7 15 15 H 1.08002 * 119.99656 * 29.07923 * 14 13 8 16 16 C 1.39942 * 120.00167 * 209.08018 * 14 13 8 17 17 N 1.30825 * 120.00009 * 197.09316 * 16 14 13 18 18 Si 1.86794 * 120.00079 * 17.09316 * 16 14 13 19 19 H 1.48503 * 109.47475 * 270.00377 * 18 16 14 20 20 H 1.48503 * 109.47050 * 30.00126 * 18 16 14 21 21 H 1.48504 * 109.47360 * 150.00027 * 18 16 14 22 22 H 1.08996 * 109.47185 * 299.99149 * 1 2 3 23 23 H 1.08997 * 109.47543 * 59.99725 * 1 2 3 24 24 H 1.09007 * 109.46742 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46899 * 270.00078 * 4 3 2 26 26 H 1.08995 * 109.46783 * 30.00391 * 4 3 2 27 27 H 1.09000 * 109.46921 * 150.00353 * 4 3 2 28 28 H 1.08999 * 109.47299 * 60.00523 * 7 5 3 29 29 H 1.08998 * 109.47401 * 299.99992 * 7 5 3 30 30 H 1.08005 * 119.87130 * 0.02562 * 9 8 7 31 31 H 1.08001 * 119.74473 * 179.69460 * 10 9 8 32 32 H 1.08002 * 119.87493 * 180.02562 * 11 10 9 33 33 H 1.08003 * 120.12022 * 180.02562 * 12 11 10 34 34 H 0.97001 * 119.99850 * 355.46872 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9629 -1.2687 5 6 2.2790 1.9091 1.1673 6 8 2.7719 3.0173 1.1674 7 6 1.9721 1.2208 2.4724 8 6 2.3700 2.1156 3.6178 9 6 3.6062 1.9756 4.2067 10 6 3.9721 2.7929 5.2648 11 6 3.1024 3.7636 5.7378 12 6 1.8644 3.9262 5.1596 13 6 1.4817 3.1015 4.0853 14 6 0.2119 3.2591 3.4836 15 1 -0.2800 2.4110 3.0308 16 6 -0.4073 4.5140 3.4749 17 7 -1.6896 4.6091 3.2333 18 14 0.5968 6.0535 3.8082 19 1 0.5961 6.3392 5.2655 20 1 1.9924 5.8439 3.3457 21 1 0.0006 7.2012 3.0785 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 3.3155 1.7109 -1.5833 26 1 1.5938 1.6338 -2.0283 27 1 2.2208 3.0419 -1.1382 28 1 2.5300 0.2862 2.5302 29 1 0.9041 1.0107 2.5300 30 1 4.2918 1.2230 3.8461 31 1 4.9422 2.6727 5.7241 32 1 3.3981 4.3951 6.5625 33 1 1.1887 4.6832 5.5293 34 1 -2.1982 3.8181 2.9956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777291682.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:52 Heat of formation + Delta-G solvation = -31.967250 kcal Electronic energy + Delta-G solvation = -18530.769315 eV Core-core repulsion = 15622.840008 eV Total energy + Delta-G solvation = -2907.929308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03410 -39.48400 -38.31321 -35.61137 -34.01280 -33.60580 -32.02245 -29.52215 -28.05922 -26.90902 -25.92216 -23.23080 -21.97577 -21.04533 -20.04610 -18.57876 -17.95446 -17.28783 -17.02617 -16.37764 -15.99978 -15.59141 -15.33990 -15.29118 -15.18054 -14.42773 -14.06854 -13.89292 -13.74894 -13.55002 -13.11797 -12.93156 -12.77319 -12.61576 -12.15848 -11.96249 -11.69802 -11.59655 -11.15797 -10.89976 -10.86470 -10.09097 -9.57605 -9.36511 -9.16445 -6.50505 0.72880 0.89529 0.97192 1.32083 1.52083 1.55790 1.73661 2.15871 2.67484 3.05568 3.58328 4.04643 4.20307 4.24093 4.30318 4.35976 4.40831 4.47557 4.47763 4.54558 4.62469 4.71353 4.76052 4.89975 4.97442 5.23354 5.33572 5.49004 5.59713 5.81924 5.88213 6.02129 6.17566 6.35918 6.47072 6.72355 6.87014 7.07240 8.05773 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019146 B = 0.009703 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.090023 B = 2884.903450 C = 3610.377853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.145 6.145 3 N -0.493 5.493 4 C 0.083 3.917 5 C 0.527 3.473 6 O -0.547 6.547 7 C -0.063 4.063 8 C -0.182 4.182 9 C -0.079 4.079 10 C -0.230 4.230 11 C -0.085 4.085 12 C -0.264 4.264 13 C 0.087 3.913 14 C -0.535 4.535 15 H 0.057 0.943 16 C 0.015 3.985 17 N -0.851 5.851 18 Si 1.096 2.904 19 H -0.256 1.256 20 H -0.276 1.276 21 H -0.285 1.285 22 H 0.034 0.966 23 H 0.062 0.938 24 H 0.141 0.859 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 -7.740 -5.750 10.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.149 6.149 3 N -0.273 5.273 4 C -0.056 4.056 5 C 0.318 3.682 6 O -0.423 6.423 7 C -0.102 4.102 8 C -0.183 4.183 9 C -0.097 4.097 10 C -0.248 4.248 11 C -0.103 4.103 12 C -0.283 4.283 13 C 0.084 3.916 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.198 4.198 17 N -0.476 5.476 18 Si 0.920 3.080 19 H -0.182 1.182 20 H -0.202 1.202 21 H -0.213 1.213 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.159 0.841 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.118 0.882 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.228 -5.714 -5.624 9.571 hybrid contribution -0.874 -1.682 -0.360 1.929 sum 4.354 -7.396 -5.984 10.462 Atomic orbital electron populations 1.23591 0.80374 1.05708 1.01185 1.90559 1.21441 1.06101 1.96834 1.50137 1.59421 1.10900 1.06870 1.22003 1.02852 0.97191 0.83574 1.21201 0.76676 0.84868 0.85489 1.90702 1.45123 1.20058 1.86438 1.20217 1.02864 0.98132 0.88975 1.19516 0.95743 1.03066 1.00016 1.20899 0.94603 0.98548 0.95619 1.20897 1.00972 1.00930 1.02029 1.21026 0.93245 0.97409 0.98660 1.21316 0.99514 1.06168 1.01349 1.17774 0.92203 0.91270 0.90333 1.20461 1.02995 0.96874 1.36168 0.92540 1.27867 0.95849 1.04830 0.91226 1.70619 1.06867 1.35212 1.34926 0.83279 0.74733 0.71872 0.78081 1.18198 1.20173 1.21261 0.94740 0.91959 0.84085 0.90409 0.88088 0.91321 0.87060 0.89684 0.85876 0.85155 0.85520 0.88228 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.26 11.44 113.37 1.30 1.04 16 2 O -0.15 -4.09 10.84 -38.78 -0.42 -4.51 16 3 N -0.49 -16.45 3.36 -484.52 -1.63 -18.08 16 4 C 0.08 2.21 10.82 127.77 1.38 3.60 16 5 C 0.53 22.02 7.75 87.66 0.68 22.69 16 6 O -0.55 -27.25 15.61 -3.03 -0.05 -27.30 16 7 C -0.06 -2.53 4.66 29.10 0.14 -2.39 16 8 C -0.18 -8.50 4.43 -19.40 -0.09 -8.59 16 9 C -0.08 -3.27 9.66 22.22 0.21 -3.06 16 10 C -0.23 -9.16 10.05 22.46 0.23 -8.94 16 11 C -0.09 -3.65 10.02 22.22 0.22 -3.43 16 12 C -0.26 -13.14 7.26 22.73 0.16 -12.98 16 13 C 0.09 4.55 5.13 -21.29 -0.11 4.44 16 14 C -0.53 -29.80 8.80 23.46 0.21 -29.60 16 15 H 0.06 3.21 6.60 -2.91 -0.02 3.19 16 16 C 0.02 0.86 5.42 85.26 0.46 1.32 16 17 N -0.85 -48.08 13.65 21.83 0.30 -47.78 16 18 Si 1.10 53.49 24.89 68.60 1.71 55.20 16 19 H -0.26 -11.40 6.45 99.48 0.64 -10.76 16 20 H -0.28 -14.18 7.02 99.48 0.70 -13.48 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 22 H 0.03 0.98 7.13 -2.39 -0.02 0.96 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.14 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.07 2.09 7.42 -2.39 -0.02 2.07 16 28 H 0.11 3.75 8.06 -2.39 -0.02 3.74 16 29 H 0.09 3.53 5.49 -2.39 -0.01 3.51 16 30 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.10 4.94 4.43 -2.91 -0.01 4.93 16 34 H 0.28 15.26 8.73 -92.71 -0.81 14.45 16 Total: -1.00 -67.94 288.97 5.70 -62.24 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.99 Total: 16.11 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 4.80 Total: -35.89 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -1.33 Total: -65.86 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.47 Total: -31.81 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 1.71 Total: 55.20 kcal Total: -67.94 5.70 -62.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777291682.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.276 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds