Wall clock time and date at job start Mon Mar 30 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 5 5 H 1.09002 * 109.47061 * 300.00284 * 4 2 1 6 6 C 1.50699 * 109.47425 * 179.97438 * 4 2 1 7 7 O 1.21210 * 119.99721 * 340.00607 * 6 4 2 8 8 O 1.34308 * 120.00059 * 160.00171 * 6 4 2 9 9 C 1.34916 * 117.00138 * 180.02562 * 8 6 4 10 10 H 1.07999 * 120.00038 * 0.02562 * 9 8 6 11 11 C 1.38754 * 120.00034 * 179.97438 * 9 8 6 12 12 N 1.31446 * 120.00184 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00080 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47453 * 89.99627 * 13 11 9 15 15 H 1.48501 * 109.47155 * 209.99825 * 13 11 9 16 16 H 1.48500 * 109.47195 * 329.99527 * 13 11 9 17 17 C 1.50704 * 109.46532 * 59.99909 * 4 2 1 18 18 C 1.38232 * 120.00232 * 39.73146 * 17 4 2 19 19 C 1.38233 * 119.99917 * 179.80458 * 18 17 4 20 20 C 1.38228 * 120.00379 * 0.39795 * 19 18 17 21 21 C 1.38243 * 119.99711 * 359.85642 * 20 19 18 22 22 C 1.38233 * 119.99907 * 359.95563 * 21 20 19 23 23 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 24 24 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 25 25 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46903 * 59.99922 * 3 2 1 27 27 H 1.08998 * 109.46795 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47087 * 299.99901 * 3 2 1 29 29 H 0.96993 * 120.00404 * 179.97438 * 12 11 9 30 30 H 1.08001 * 119.99761 * 359.97438 * 18 17 4 31 31 H 1.08002 * 119.99738 * 180.22611 * 19 18 17 32 32 H 1.07997 * 120.00458 * 179.83082 * 20 19 18 33 33 H 1.07996 * 120.00165 * 179.97438 * 21 20 19 34 34 H 1.08002 * 119.99788 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 1 1.6460 -0.3200 2.0688 6 6 3.5020 -0.7440 1.1038 7 8 4.0813 -0.4823 0.0718 8 8 4.2027 -1.0143 2.2173 9 6 5.5477 -0.9772 2.1188 10 1 6.0136 -0.7375 1.1744 11 6 6.3325 -1.2459 3.2311 12 7 7.6429 -1.2092 3.1352 13 14 5.5268 -1.6597 4.8647 14 1 5.3265 -3.1281 4.9601 15 1 6.4005 -1.2061 5.9766 16 1 4.2128 -0.9739 4.9564 17 6 1.5123 -2.1907 1.0504 18 6 1.4549 -2.8274 -0.1752 19 6 1.0155 -4.1356 -0.2546 20 6 0.6256 -4.8045 0.8906 21 6 0.6780 -4.1661 2.1156 22 6 1.1211 -2.8591 2.1955 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6459 1.8948 0.8900 27 1 3.0850 1.3424 -0.0005 28 1 1.6459 1.8948 -0.8900 29 1 8.1916 -1.3966 3.9128 30 1 1.7561 -2.3036 -1.0704 31 1 0.9742 -4.6343 -1.2117 32 1 0.2797 -5.8257 0.8282 33 1 0.3730 -4.6884 3.0103 34 1 1.1624 -2.3605 3.1526 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780087588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:03 Heat of formation + Delta-G solvation = -34.363412 kcal Electronic energy + Delta-G solvation = -18428.189195 eV Core-core repulsion = 15520.155982 eV Total energy + Delta-G solvation = -2908.033213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01724 -38.60754 -36.87616 -34.96807 -32.32804 -31.68323 -30.67399 -27.91026 -27.02879 -25.28021 -22.74622 -22.13805 -21.56923 -19.39804 -17.94979 -17.04200 -16.66155 -15.56100 -15.42184 -15.09962 -14.44649 -14.21247 -14.13170 -13.92536 -13.23793 -13.09535 -12.67691 -12.40748 -12.35433 -12.10369 -11.82961 -11.76014 -11.57951 -11.08629 -10.84046 -10.79082 -10.42295 -10.26806 -9.69856 -9.28222 -8.69310 -8.66436 -8.43512 -8.17431 -6.35947 -4.11031 1.48108 1.63100 3.13128 3.23031 3.34376 3.39080 3.71562 3.94258 4.25054 4.53170 4.91597 5.06786 5.15239 5.18078 5.29210 5.35389 5.46050 5.52175 5.67961 5.75165 5.79784 5.84372 5.94423 6.10908 6.26125 6.28731 6.36433 6.62651 6.70305 6.77332 7.10498 7.20161 7.21201 7.74755 8.05330 8.64336 9.02622 9.70845 10.72622 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.008725 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.567165 B = 3208.334990 C = 4029.780026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.521 5.521 3 C 0.015 3.985 4 C 0.141 3.859 5 H 0.070 0.930 6 C 0.418 3.582 7 O -0.516 6.516 8 O -0.251 6.251 9 C -0.378 4.378 10 H 0.110 0.890 11 C 0.067 3.933 12 N -0.875 5.875 13 Si 0.902 3.098 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.261 1.261 17 C -0.075 4.075 18 C -0.082 4.082 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.104 4.104 23 H 0.071 0.929 24 H 0.024 0.976 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.279 0.721 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.527 -2.314 -1.934 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.246 5.246 3 C -0.132 4.132 4 C 0.032 3.968 5 H 0.088 0.912 6 C 0.262 3.738 7 O -0.409 6.409 8 O -0.159 6.159 9 C -0.454 4.454 10 H 0.127 0.873 11 C -0.137 4.137 12 N -0.514 5.514 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.185 1.185 17 C -0.076 4.076 18 C -0.100 4.100 19 C -0.146 4.146 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.122 4.122 23 H 0.089 0.911 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.988 -2.482 -2.513 16.374 hybrid contribution -0.323 0.189 1.522 1.567 sum -16.312 -2.293 -0.991 16.502 Atomic orbital electron populations 1.22435 0.86864 1.02424 1.00550 1.61637 1.07358 1.14371 1.41244 1.22594 1.03387 0.87281 0.99986 1.19868 0.90541 0.92504 0.93902 0.91220 1.22391 0.88984 0.79359 0.83054 1.90582 1.71060 1.47097 1.32198 1.83507 1.22018 1.74714 1.35661 1.20632 0.75783 1.48607 1.00387 0.87276 1.24518 0.94576 0.95826 0.98773 1.69604 1.03289 1.46865 1.31651 0.86263 0.79872 0.79409 0.81721 1.19763 1.20746 1.18481 1.19403 0.99906 0.94174 0.94105 1.21134 0.96765 0.94173 0.97957 1.21142 1.00234 0.94804 0.98421 1.21128 1.00236 0.99567 0.92871 1.21032 1.00883 0.94724 0.97695 1.21055 0.98265 0.95107 0.97820 0.91074 0.95732 0.90997 0.96000 0.89067 0.91227 0.91065 0.84791 0.86151 0.86386 0.86140 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.26 60.07 0.56 0.87 16 2 N -0.52 -8.58 3.93 -245.99 -0.97 -9.54 16 3 C 0.02 0.24 9.19 60.07 0.55 0.79 16 4 C 0.14 2.63 2.19 -70.02 -0.15 2.47 16 5 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 6 C 0.42 10.11 6.27 36.01 0.23 10.33 16 7 O -0.52 -13.78 13.95 -19.05 -0.27 -14.05 16 8 O -0.25 -6.76 8.58 -20.68 -0.18 -6.94 16 9 C -0.38 -11.39 10.10 30.92 0.31 -11.08 16 10 H 0.11 3.61 7.09 -52.49 -0.37 3.24 16 11 C 0.07 1.93 5.49 -17.53 -0.10 1.84 16 12 N -0.87 -26.17 13.96 55.48 0.77 -25.39 16 13 Si 0.90 21.68 28.62 -169.99 -4.86 16.81 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.08 -1.29 3.73 -104.62 -0.39 -1.68 16 18 C -0.08 -1.33 8.41 -39.59 -0.33 -1.66 16 19 C -0.13 -1.76 10.05 -39.59 -0.40 -2.16 16 20 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 21 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 22 C -0.10 -1.61 9.67 -39.58 -0.38 -2.00 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.89 6.36 -51.93 -0.33 0.56 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 1.78 5.68 -51.93 -0.30 1.49 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.13 2.26 7.71 -52.49 -0.40 1.85 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 LS Contribution 292.73 15.07 4.41 4.41 Total: -1.00 -32.68 292.73 -6.32 -39.00 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.33 Total: 1.98 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.90 Total: -6.28 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.19 Total: -34.94 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.44 Total: -20.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.86 Total: 16.81 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.68 -6.32 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780087588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.641 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds