Wall clock time and date at job start Mon Mar 30 2020 18:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 5 5 H 1.09002 * 109.47061 * 300.00284 * 4 2 1 6 6 C 1.50699 * 109.47425 * 179.97438 * 4 2 1 7 7 O 1.21210 * 119.99721 * 340.00607 * 6 4 2 8 8 O 1.34308 * 120.00059 * 160.00171 * 6 4 2 9 9 C 1.34916 * 117.00138 * 180.02562 * 8 6 4 10 10 H 1.07999 * 120.00038 * 0.02562 * 9 8 6 11 11 C 1.38754 * 120.00034 * 179.97438 * 9 8 6 12 12 N 1.31446 * 120.00184 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00080 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47453 * 89.99627 * 13 11 9 15 15 H 1.48501 * 109.47155 * 209.99825 * 13 11 9 16 16 H 1.48500 * 109.47195 * 329.99527 * 13 11 9 17 17 C 1.50704 * 109.46532 * 59.99909 * 4 2 1 18 18 C 1.38232 * 120.00232 * 39.73146 * 17 4 2 19 19 C 1.38233 * 119.99917 * 179.80458 * 18 17 4 20 20 C 1.38228 * 120.00379 * 0.39795 * 19 18 17 21 21 C 1.38243 * 119.99711 * 359.85642 * 20 19 18 22 22 C 1.38233 * 119.99907 * 359.95563 * 21 20 19 23 23 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 24 24 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 25 25 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46903 * 59.99922 * 3 2 1 27 27 H 1.08998 * 109.46795 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47087 * 299.99901 * 3 2 1 29 29 H 0.96993 * 120.00404 * 179.97438 * 12 11 9 30 30 H 1.08001 * 119.99761 * 359.97438 * 18 17 4 31 31 H 1.08002 * 119.99738 * 180.22611 * 19 18 17 32 32 H 1.07997 * 120.00458 * 179.83082 * 20 19 18 33 33 H 1.07996 * 120.00165 * 179.97438 * 21 20 19 34 34 H 1.08002 * 119.99788 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 1 1.6460 -0.3200 2.0688 6 6 3.5020 -0.7440 1.1038 7 8 4.0813 -0.4823 0.0718 8 8 4.2027 -1.0143 2.2173 9 6 5.5477 -0.9772 2.1188 10 1 6.0136 -0.7375 1.1744 11 6 6.3325 -1.2459 3.2311 12 7 7.6429 -1.2092 3.1352 13 14 5.5268 -1.6597 4.8647 14 1 5.3265 -3.1281 4.9601 15 1 6.4005 -1.2061 5.9766 16 1 4.2128 -0.9739 4.9564 17 6 1.5123 -2.1907 1.0504 18 6 1.4549 -2.8274 -0.1752 19 6 1.0155 -4.1356 -0.2546 20 6 0.6256 -4.8045 0.8906 21 6 0.6780 -4.1661 2.1156 22 6 1.1211 -2.8591 2.1955 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6459 1.8948 0.8900 27 1 3.0850 1.3424 -0.0005 28 1 1.6459 1.8948 -0.8900 29 1 8.1916 -1.3966 3.9128 30 1 1.7561 -2.3036 -1.0704 31 1 0.9742 -4.6343 -1.2117 32 1 0.2797 -5.8257 0.8282 33 1 0.3730 -4.6884 3.0103 34 1 1.1624 -2.3605 3.1526 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780087588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:02 Heat of formation + Delta-G solvation = -55.520132 kcal Electronic energy + Delta-G solvation = -18429.106619 eV Core-core repulsion = 15520.155982 eV Total energy + Delta-G solvation = -2908.950637 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.67407 -40.09923 -38.31511 -36.90651 -34.53533 -32.92200 -31.76934 -29.32727 -28.28018 -27.27175 -23.99390 -23.30902 -23.02882 -21.03521 -20.15718 -18.78928 -17.97945 -17.14109 -16.84785 -16.68464 -16.01528 -15.89601 -15.31915 -15.27760 -14.85921 -14.44159 -14.22633 -13.92998 -13.84418 -13.46365 -13.21596 -13.17537 -12.85807 -12.64853 -12.35217 -12.21300 -11.93922 -11.89138 -11.88263 -11.13587 -10.85243 -9.79653 -9.65866 -9.43674 -8.57064 -6.43560 0.32683 0.52692 1.25628 1.30007 1.49207 1.53358 2.12068 2.26291 2.76030 2.88167 3.13304 3.64760 3.87719 4.12548 4.20582 4.23688 4.31615 4.37135 4.39024 4.61272 4.65130 4.67107 4.73307 4.98947 4.99862 5.03763 5.18655 5.44461 5.55311 5.58647 5.62635 5.79597 5.90775 6.03288 6.11868 6.51021 6.79731 7.57024 8.56032 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.008725 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.567165 B = 3208.334990 C = 4029.780026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.536 5.536 3 C 0.018 3.982 4 C 0.153 3.847 5 H 0.084 0.916 6 C 0.418 3.582 7 O -0.550 6.550 8 O -0.257 6.257 9 C -0.406 4.406 10 H 0.056 0.944 11 C 0.017 3.983 12 N -0.916 5.916 13 Si 0.979 3.021 14 H -0.258 1.258 15 H -0.263 1.263 16 H -0.250 1.250 17 C -0.100 4.100 18 C -0.100 4.100 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.117 4.117 23 H 0.091 0.909 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.290 0.710 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.535 -3.868 -0.257 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.262 5.262 3 C -0.130 4.130 4 C 0.044 3.956 5 H 0.101 0.899 6 C 0.264 3.736 7 O -0.443 6.443 8 O -0.166 6.166 9 C -0.482 4.482 10 H 0.074 0.926 11 C -0.183 4.183 12 N -0.556 5.556 13 Si 0.798 3.202 14 H -0.183 1.183 15 H -0.187 1.187 16 H -0.173 1.173 17 C -0.100 4.100 18 C -0.118 4.118 19 C -0.148 4.148 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.135 4.135 23 H 0.109 0.891 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.005 -4.026 -0.865 19.446 hybrid contribution 0.582 0.663 0.819 1.204 sum -18.424 -3.364 -0.045 18.728 Atomic orbital electron populations 1.22492 0.83917 1.03143 1.02167 1.61636 1.09840 1.14186 1.40550 1.22526 1.00617 0.87834 1.02029 1.19870 0.85687 0.94662 0.95391 0.89872 1.23814 0.91416 0.76595 0.81792 1.90560 1.72532 1.47921 1.33322 1.83518 1.20300 1.75905 1.36882 1.20284 0.77557 1.51124 0.99201 0.92626 1.25551 0.95062 0.94699 1.02976 1.69702 1.05016 1.47312 1.33587 0.85144 0.79295 0.79870 0.75881 1.18278 1.18747 1.17298 1.19381 1.02000 0.93394 0.95271 1.21119 0.98096 0.95497 0.97131 1.21446 0.99324 0.93790 1.00207 1.21573 0.98465 1.00942 0.92047 1.21437 0.99581 0.93881 0.99261 1.21278 0.98572 0.96188 0.97475 0.89058 0.94321 0.90762 0.94437 0.93545 0.88689 0.90051 0.86621 0.83862 0.82853 0.83087 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.26 127.69 1.18 1.86 16 2 N -0.54 -17.46 3.93 -932.18 -3.66 -21.12 16 3 C 0.02 0.57 9.19 127.69 1.17 1.74 16 4 C 0.15 5.70 2.19 43.42 0.10 5.79 16 5 H 0.08 2.81 8.00 -2.39 -0.02 2.79 16 6 C 0.42 21.04 6.27 71.24 0.45 21.49 16 7 O -0.55 -31.31 13.95 20.77 0.29 -31.02 16 8 O -0.26 -14.29 8.58 14.94 0.13 -14.16 16 9 C -0.41 -25.70 10.10 67.94 0.69 -25.01 16 10 H 0.06 4.01 7.09 -2.91 -0.02 3.99 16 11 C 0.02 1.01 5.49 84.87 0.47 1.48 16 12 N -0.92 -56.36 13.96 21.63 0.30 -56.06 16 13 Si 0.98 44.23 28.62 68.60 1.96 46.19 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 17 C -0.10 -3.33 3.73 -19.86 -0.07 -3.40 16 18 C -0.10 -3.17 8.41 22.27 0.19 -2.98 16 19 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 20 C -0.11 -2.43 10.05 22.27 0.22 -2.21 16 21 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 22 C -0.12 -3.35 9.67 22.27 0.22 -3.14 16 23 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 1.70 6.36 -2.38 -0.02 1.68 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.90 5.68 -2.39 -0.01 1.89 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.29 16.01 8.31 -92.71 -0.77 15.23 16 30 H 0.12 4.00 7.71 -2.91 -0.02 3.98 16 31 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.13 3.44 8.04 -2.91 -0.02 3.42 16 Total: -1.00 -75.55 292.73 5.16 -70.39 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.09 Total: 15.86 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.05 Total: -10.07 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -3.36 Total: -77.19 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: 0.42 Total: -45.19 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.96 Total: 46.19 kcal Total: -75.55 5.16 -70.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780087588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.868 kcal (2) G-P(sol) polarization free energy of solvation -75.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds