Wall clock time and date at job start Mon Mar 30 2020 18:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 C 1.52997 * 109.46894 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47140 * 304.99571 * 4 3 2 6 6 C 1.50706 * 109.47103 * 184.99525 * 4 3 2 7 7 O 1.21207 * 120.00189 * 239.72260 * 6 4 3 8 8 O 1.34310 * 119.99701 * 59.99895 * 6 4 3 9 9 C 1.34915 * 117.00237 * 180.02562 * 8 6 4 10 10 H 1.08001 * 119.99912 * 359.97438 * 9 8 6 11 11 C 1.38749 * 120.00590 * 180.02562 * 9 8 6 12 12 N 1.31442 * 119.99839 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00435 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47272 * 59.99803 * 13 11 9 15 15 H 1.48494 * 109.47303 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47008 * 299.99841 * 13 11 9 17 17 C 1.50699 * 109.47265 * 64.99823 * 4 3 2 18 18 C 1.38227 * 119.61957 * 84.72681 * 17 4 3 19 19 C 1.38626 * 119.16288 * 179.75563 * 18 17 4 20 20 C 1.38679 * 118.42044 * 0.50588 * 19 18 17 21 21 C 1.38177 * 119.15843 * 359.73582 * 20 19 18 22 22 N 1.31850 * 119.61910 * 264.99983 * 17 4 3 23 23 H 1.09003 * 109.46865 * 299.99902 * 1 2 3 24 24 H 1.09001 * 109.47171 * 60.00127 * 1 2 3 25 25 H 1.09001 * 109.47298 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46504 * 239.99468 * 2 1 3 27 27 H 1.08993 * 109.46871 * 119.99845 * 2 1 3 28 28 H 1.08994 * 109.47407 * 59.99719 * 3 2 1 29 29 H 1.09001 * 109.46995 * 299.99981 * 3 2 1 30 30 H 0.97005 * 120.00432 * 180.02562 * 12 11 9 31 31 H 1.08003 * 120.41865 * 359.97438 * 18 17 4 32 32 H 1.08002 * 120.79101 * 180.26842 * 19 18 17 33 33 H 1.07990 * 120.41874 * 179.71172 * 20 19 18 34 34 H 1.08004 * 119.61466 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0725 2.8578 0.1231 7 8 4.7731 3.3304 -0.7458 8 8 3.7485 3.5938 1.1988 9 6 4.2304 4.8530 1.2474 10 1 4.8472 5.2265 0.4433 11 6 3.9346 5.6679 2.3307 12 7 3.1844 5.2133 3.3095 13 14 4.6026 7.4111 2.3981 14 1 4.1060 8.1771 1.2269 15 1 4.1454 8.0683 3.6487 16 1 6.0869 7.3738 2.3720 17 6 4.0718 0.8421 -1.2886 18 6 4.1950 1.6389 -2.4114 19 6 4.6624 1.0780 -3.5898 20 6 4.9798 -0.2719 -3.5978 21 6 4.8261 -1.0066 -2.4377 22 7 4.3832 -0.4384 -1.3329 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 2.9773 5.7831 4.0668 31 1 3.9338 2.6860 -2.3701 32 1 4.7730 1.6772 -4.4815 33 1 5.3422 -0.7431 -4.4994 34 1 5.0707 -2.0586 -2.4357 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799531687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:13 Heat of formation + Delta-G solvation = -74.832125 kcal Electronic energy + Delta-G solvation = -18034.258610 eV Core-core repulsion = 15124.470542 eV Total energy + Delta-G solvation = -2909.788068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81348 -40.56585 -37.55288 -36.67973 -34.31080 -33.41026 -32.99972 -30.37585 -27.61405 -25.96818 -24.47128 -23.86847 -22.16139 -21.37961 -19.91612 -18.53197 -17.80383 -17.21981 -16.90728 -16.58948 -16.21376 -16.02007 -15.75198 -15.01098 -14.60352 -14.34555 -14.18361 -13.81619 -13.63944 -13.35879 -13.20600 -12.96370 -12.47183 -12.43748 -12.17511 -12.09957 -12.02889 -11.86961 -11.55792 -10.96499 -10.70929 -10.58798 -10.37036 -9.83735 -8.54765 -6.34871 0.18708 0.41974 1.27605 1.33262 1.49249 1.59531 2.06238 2.55419 2.90771 2.97695 3.28177 3.84036 3.91138 3.96137 4.08659 4.18937 4.26956 4.29186 4.43328 4.58967 4.67639 4.74312 4.80517 4.91481 4.97256 5.03693 5.15455 5.21259 5.27012 5.32933 5.36882 5.46008 5.80473 5.85512 6.60418 6.89699 7.04850 7.73023 8.65396 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.006423 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.070463 B = 4358.551891 C = 5228.398329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.096 4.096 4 C -0.016 4.016 5 H 0.111 0.889 6 C 0.402 3.598 7 O -0.567 6.567 8 O -0.235 6.235 9 C -0.423 4.423 10 H 0.083 0.917 11 C -0.002 4.002 12 N -0.900 5.900 13 Si 1.017 2.983 14 H -0.261 1.261 15 H -0.260 1.260 16 H -0.263 1.263 17 C 0.123 3.877 18 C -0.154 4.154 19 C -0.088 4.088 20 C -0.162 4.162 21 C 0.082 3.918 22 N -0.494 5.494 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.279 0.721 31 H 0.123 0.877 32 H 0.156 0.844 33 H 0.174 0.826 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -10.621 -10.637 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.134 4.134 4 C -0.036 4.036 5 H 0.129 0.871 6 C 0.249 3.751 7 O -0.465 6.465 8 O -0.142 6.142 9 C -0.498 4.498 10 H 0.101 0.899 11 C -0.203 4.203 12 N -0.537 5.537 13 Si 0.835 3.165 14 H -0.185 1.185 15 H -0.183 1.183 16 H -0.188 1.188 17 C -0.013 4.013 18 C -0.174 4.174 19 C -0.114 4.114 20 C -0.181 4.181 21 C -0.075 4.075 22 N -0.204 5.204 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.173 0.827 33 H 0.191 0.809 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.556 -10.933 -9.873 14.814 hybrid contribution 0.531 1.548 -0.435 1.693 sum -1.025 -9.385 -10.309 13.979 Atomic orbital electron populations 1.21751 0.94337 1.02492 1.01913 1.21411 0.96737 0.93863 1.02521 1.21512 0.89628 0.99657 1.02651 1.19565 0.98630 0.88276 0.97091 0.87064 1.23836 0.80546 0.89765 0.80922 1.90487 1.39886 1.74226 1.41941 1.83888 1.64401 1.25735 1.40198 1.21407 1.33510 0.86506 1.08397 0.89932 1.26523 0.95969 1.04424 0.93346 1.70072 1.35350 1.39125 1.09125 0.84702 0.78751 0.74105 0.78909 1.18498 1.18332 1.18774 1.20292 0.97177 0.90309 0.93536 1.22316 0.99961 1.01128 0.93981 1.21946 0.95522 0.96201 0.97734 1.22523 1.00398 0.94174 1.01040 1.23327 0.94810 1.01687 0.87678 1.67332 1.11613 1.10838 1.30599 0.92759 0.92735 0.90982 0.91964 0.91437 0.91308 0.92033 0.91139 0.85954 0.82677 0.80867 0.79335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.11 -3.07 5.71 30.60 0.17 -2.90 16 3 C -0.10 -3.45 4.64 30.59 0.14 -3.31 16 4 C -0.02 -0.64 2.62 -12.29 -0.03 -0.67 16 5 H 0.11 4.48 8.14 -2.39 -0.02 4.47 16 6 C 0.40 20.84 6.98 71.24 0.50 21.34 16 7 O -0.57 -31.01 12.38 20.78 0.26 -30.75 16 8 O -0.23 -14.00 9.56 14.93 0.14 -13.86 16 9 C -0.42 -25.81 9.64 67.94 0.66 -25.16 16 10 H 0.08 5.08 6.86 -2.91 -0.02 5.06 16 11 C 0.00 -0.11 5.49 84.87 0.47 0.35 16 12 N -0.90 -53.37 13.67 21.62 0.30 -53.07 16 13 Si 1.02 43.59 29.55 68.60 2.03 45.61 16 14 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 15 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 16 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 17 C 0.12 4.56 4.88 42.55 0.21 4.76 16 18 C -0.15 -5.55 8.26 22.36 0.18 -5.36 16 19 C -0.09 -2.35 10.18 22.47 0.23 -2.12 16 20 C -0.16 -3.43 10.11 22.36 0.23 -3.20 16 21 C 0.08 1.97 11.18 84.67 0.95 2.92 16 22 N -0.49 -15.95 9.61 -183.89 -1.77 -17.71 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.78 6.89 -2.39 -0.02 1.76 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 2.71 8.00 -2.39 -0.02 2.69 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.28 15.03 8.31 -92.70 -0.77 14.26 16 31 H 0.12 5.07 5.98 -2.91 -0.02 5.06 16 32 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.17 2.11 8.06 -2.92 -0.02 2.09 16 34 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.65 294.74 6.46 -66.19 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.09 Total: 19.73 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.41 Total: -16.14 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.47 Total: -70.78 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: 0.40 Total: -44.61 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.65 6.46 -66.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799531687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.640 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds