Wall clock time and date at job start Mon Mar 30 2020 18:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47131 * 2 1 4 4 C 1.52997 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47192 * 304.99626 * 4 3 2 6 6 C 1.50693 * 109.47275 * 65.00294 * 4 3 2 7 7 O 1.21213 * 120.00493 * 120.00027 * 6 4 3 8 8 O 1.34310 * 119.99805 * 299.72282 * 6 4 3 9 9 C 1.34922 * 117.00349 * 180.27868 * 8 6 4 10 10 H 1.08003 * 119.99659 * 359.97438 * 9 8 6 11 11 C 1.38755 * 120.00272 * 179.97438 * 9 8 6 12 12 N 1.31441 * 120.00098 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99825 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47079 * 60.00337 * 13 11 9 15 15 H 1.48500 * 109.46664 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47336 * 300.00039 * 13 11 9 17 17 C 1.50708 * 109.46781 * 184.99949 * 4 3 2 18 18 C 1.38228 * 119.61668 * 274.99696 * 17 4 3 19 19 C 1.38627 * 119.15977 * 179.97438 * 18 17 4 20 20 C 1.38685 * 118.41831 * 0.02562 * 19 18 17 21 21 C 1.38182 * 119.16304 * 359.97438 * 20 19 18 22 22 N 1.31851 * 119.61532 * 94.72775 * 17 4 3 23 23 H 1.09000 * 109.47163 * 300.00180 * 1 2 3 24 24 H 1.09004 * 109.47446 * 60.00234 * 1 2 3 25 25 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47538 * 240.00446 * 2 1 3 27 27 H 1.08996 * 109.47139 * 119.99736 * 2 1 3 28 28 H 1.09005 * 109.46769 * 59.99868 * 3 2 1 29 29 H 1.09004 * 109.46765 * 300.00183 * 3 2 1 30 30 H 0.96993 * 120.00374 * 179.97438 * 12 11 9 31 31 H 1.07995 * 120.42136 * 0.02562 * 18 17 4 32 32 H 1.07992 * 120.79435 * 180.02562 * 19 18 17 33 33 H 1.07995 * 120.41377 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.61164 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0728 0.8420 -1.2867 7 8 4.7701 1.4982 -2.0300 8 8 3.7531 -0.4223 -1.6078 9 6 4.2405 -0.9008 -2.7714 10 1 4.8573 -0.2730 -3.3974 11 6 3.9493 -2.1995 -3.1639 12 7 3.1982 -2.9634 -2.4024 13 14 4.6236 -2.8616 -4.7752 14 1 6.1076 -2.8202 -4.7451 15 1 4.1707 -4.2634 -4.9625 16 1 4.1278 -2.0274 -5.8993 17 6 4.0722 2.8581 0.1245 18 6 4.2016 3.6386 -1.0090 19 6 4.6640 4.9395 -0.8841 20 6 4.9808 5.4087 0.3820 21 6 4.8257 4.5700 1.4692 22 7 4.3779 3.3393 1.3133 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 2.9944 -3.8711 -2.6769 31 1 3.9451 3.2403 -1.9795 32 1 4.7748 5.5726 -1.7519 33 1 5.3433 6.4170 0.5165 34 1 5.0698 4.9280 2.4584 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799531688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:16 Heat of formation + Delta-G solvation = -54.479795 kcal Electronic energy + Delta-G solvation = -18171.282225 eV Core-core repulsion = 15262.376700 eV Total energy + Delta-G solvation = -2908.905525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29693 -38.88459 -35.61737 -34.99837 -32.31388 -32.14887 -31.64868 -28.90032 -25.53623 -24.49409 -23.24177 -22.24706 -20.93897 -19.56524 -17.78131 -16.86296 -16.46360 -15.62731 -15.37735 -15.00201 -14.57671 -14.36468 -13.68883 -13.53130 -13.31513 -12.95098 -12.86123 -12.42890 -11.91937 -11.76196 -11.62256 -11.24734 -11.12294 -10.81007 -10.50495 -10.37639 -10.30811 -10.04395 -9.61743 -9.58220 -9.20180 -8.88207 -8.58152 -8.55596 -6.42876 -4.10361 1.37165 1.58937 3.10783 3.17955 3.21355 3.47572 3.81211 4.09018 4.31642 4.74929 5.01612 5.09275 5.11257 5.30076 5.44335 5.45467 5.54656 5.67947 5.80080 5.88858 6.06497 6.12181 6.18461 6.28755 6.34318 6.47350 6.51611 6.59802 6.65842 6.84685 7.01690 7.33026 7.41627 7.93726 8.24513 8.67059 9.06206 9.81674 10.74290 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.006783 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.697999 B = 4127.076292 C = 4987.171917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C -0.096 4.096 4 C -0.025 4.025 5 H 0.112 0.888 6 C 0.403 3.597 7 O -0.552 6.552 8 O -0.199 6.199 9 C -0.386 4.386 10 H 0.095 0.905 11 C 0.045 3.955 12 N -0.861 5.861 13 Si 0.941 3.059 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.270 1.270 17 C 0.141 3.859 18 C -0.125 4.125 19 C -0.089 4.089 20 C -0.180 4.180 21 C 0.084 3.916 22 N -0.481 5.481 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.108 0.892 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.270 0.730 31 H 0.155 0.845 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 10.507 4.690 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.134 4.134 4 C -0.046 4.046 5 H 0.130 0.870 6 C 0.250 3.750 7 O -0.450 6.450 8 O -0.105 6.105 9 C -0.462 4.462 10 H 0.112 0.888 11 C -0.159 4.159 12 N -0.497 5.497 13 Si 0.766 3.234 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.196 1.196 17 C 0.003 3.997 18 C -0.145 4.145 19 C -0.115 4.115 20 C -0.200 4.200 21 C -0.073 4.073 22 N -0.190 5.190 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.877 9.888 5.233 11.344 hybrid contribution 0.611 0.303 -1.446 1.599 sum -1.266 10.192 3.787 10.946 Atomic orbital electron populations 1.21692 0.96586 1.01300 1.00502 1.21811 0.95018 0.95343 1.05450 1.21487 0.90912 0.98951 1.02017 1.19613 0.97379 0.91042 0.96520 0.86995 1.22788 0.81534 0.82856 0.87839 1.90511 1.39570 1.61851 1.53042 1.83901 1.62639 1.24989 1.39010 1.21196 1.31877 0.97357 0.95803 0.88784 1.25280 0.96344 0.94969 0.99324 1.69962 1.34443 1.08390 1.36936 0.85780 0.79276 0.77895 0.80452 1.19574 1.20392 1.19551 1.20638 0.95311 0.95088 0.88613 1.22526 0.97432 0.93116 1.01389 1.21621 0.96823 0.95655 0.97434 1.22061 1.02794 1.01126 0.94005 1.22563 0.96504 0.89390 0.98841 1.67334 1.10943 1.14691 1.26049 0.93849 0.93300 0.92770 0.87366 0.92143 0.91464 0.91878 0.91999 0.82776 0.85213 0.85396 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.55 5.57 -26.73 -0.15 -2.70 16 3 C -0.10 -1.66 4.65 -26.73 -0.12 -1.78 16 4 C -0.03 -0.50 2.64 -92.92 -0.25 -0.75 16 5 H 0.11 2.16 8.14 -51.93 -0.42 1.74 16 6 C 0.40 9.73 6.96 36.00 0.25 9.98 16 7 O -0.55 -14.16 12.35 -19.05 -0.24 -14.40 16 8 O -0.20 -5.39 6.90 -20.71 -0.14 -5.53 16 9 C -0.39 -11.01 9.65 30.92 0.30 -10.71 16 10 H 0.09 2.71 6.86 -52.48 -0.36 2.35 16 11 C 0.05 1.24 5.49 -17.53 -0.10 1.14 16 12 N -0.86 -24.21 13.67 55.48 0.76 -23.45 16 13 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 C 0.14 2.63 5.69 -82.58 -0.47 2.16 16 18 C -0.13 -2.24 8.27 -39.44 -0.33 -2.56 16 19 C -0.09 -1.29 10.18 -39.27 -0.40 -1.69 16 20 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 21 C 0.08 1.18 11.18 -17.55 -0.20 0.98 16 22 N -0.48 -8.34 10.27 -9.47 -0.10 -8.44 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.11 2.46 5.47 -51.93 -0.28 2.18 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.15 3.01 5.94 -52.49 -0.31 2.69 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 292.11 15.07 4.40 4.40 Total: -1.00 -30.95 292.11 -6.15 -37.10 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.32 Total: 4.93 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.49 Total: -10.49 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.66 Total: -31.89 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.38 Total: -19.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.95 -6.15 -37.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799531688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.380 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds