Wall clock time and date at job start Mon Mar 30 2020 18:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47131 * 2 1 4 4 C 1.52997 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47192 * 304.99626 * 4 3 2 6 6 C 1.50693 * 109.47275 * 65.00294 * 4 3 2 7 7 O 1.21213 * 120.00493 * 120.00027 * 6 4 3 8 8 O 1.34310 * 119.99805 * 299.72282 * 6 4 3 9 9 C 1.34922 * 117.00349 * 180.27868 * 8 6 4 10 10 H 1.08003 * 119.99659 * 359.97438 * 9 8 6 11 11 C 1.38755 * 120.00272 * 179.97438 * 9 8 6 12 12 N 1.31441 * 120.00098 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99825 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47079 * 60.00337 * 13 11 9 15 15 H 1.48500 * 109.46664 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47336 * 300.00039 * 13 11 9 17 17 C 1.50708 * 109.46781 * 184.99949 * 4 3 2 18 18 C 1.38228 * 119.61668 * 274.99696 * 17 4 3 19 19 C 1.38627 * 119.15977 * 179.97438 * 18 17 4 20 20 C 1.38685 * 118.41831 * 0.02562 * 19 18 17 21 21 C 1.38182 * 119.16304 * 359.97438 * 20 19 18 22 22 N 1.31851 * 119.61532 * 94.72775 * 17 4 3 23 23 H 1.09000 * 109.47163 * 300.00180 * 1 2 3 24 24 H 1.09004 * 109.47446 * 60.00234 * 1 2 3 25 25 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47538 * 240.00446 * 2 1 3 27 27 H 1.08996 * 109.47139 * 119.99736 * 2 1 3 28 28 H 1.09005 * 109.46769 * 59.99868 * 3 2 1 29 29 H 1.09004 * 109.46765 * 300.00183 * 3 2 1 30 30 H 0.96993 * 120.00374 * 179.97438 * 12 11 9 31 31 H 1.07995 * 120.42136 * 0.02562 * 18 17 4 32 32 H 1.07992 * 120.79435 * 180.02562 * 19 18 17 33 33 H 1.07995 * 120.41377 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.61164 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0728 0.8420 -1.2867 7 8 4.7701 1.4982 -2.0300 8 8 3.7531 -0.4223 -1.6078 9 6 4.2405 -0.9008 -2.7714 10 1 4.8573 -0.2730 -3.3974 11 6 3.9493 -2.1995 -3.1639 12 7 3.1982 -2.9634 -2.4024 13 14 4.6236 -2.8616 -4.7752 14 1 6.1076 -2.8202 -4.7451 15 1 4.1707 -4.2634 -4.9625 16 1 4.1278 -2.0274 -5.8993 17 6 4.0722 2.8581 0.1245 18 6 4.2016 3.6386 -1.0090 19 6 4.6640 4.9395 -0.8841 20 6 4.9808 5.4087 0.3820 21 6 4.8257 4.5700 1.4692 22 7 4.3779 3.3393 1.3133 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 2.9944 -3.8711 -2.6769 31 1 3.9451 3.2403 -1.9795 32 1 4.7748 5.5726 -1.7519 33 1 5.3433 6.4170 0.5165 34 1 5.0698 4.9280 2.4584 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799531688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:15 Heat of formation + Delta-G solvation = -72.829128 kcal Electronic energy + Delta-G solvation = -18172.077912 eV Core-core repulsion = 15262.376700 eV Total energy + Delta-G solvation = -2909.701212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.79830 -40.55606 -37.44665 -36.65702 -34.24887 -33.54199 -32.98510 -30.23922 -27.56585 -25.93310 -24.44372 -23.79380 -22.37706 -21.24756 -19.86234 -18.57726 -17.67840 -17.39108 -16.75262 -16.58288 -16.23550 -16.09101 -15.24454 -15.07772 -14.60185 -14.36243 -14.27494 -13.86988 -13.63492 -13.38812 -13.06765 -12.89443 -12.58946 -12.48546 -12.18665 -12.08277 -11.86385 -11.77151 -11.28835 -10.95876 -10.66467 -10.61498 -10.38407 -9.83982 -8.50731 -6.29326 0.17077 0.40729 1.29923 1.34488 1.49160 1.62156 2.07601 2.57107 2.90067 3.01087 3.27426 3.85924 3.95426 3.97805 4.09384 4.27328 4.28739 4.33669 4.46991 4.50147 4.73476 4.76478 4.86564 4.91506 4.95849 5.00710 5.18582 5.27602 5.30430 5.34648 5.42833 5.72440 5.84006 5.88141 6.65222 6.94391 7.03166 7.77788 8.68358 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.006783 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.697999 B = 4127.076292 C = 4987.171917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C -0.083 4.083 4 C -0.018 4.018 5 H 0.110 0.890 6 C 0.401 3.599 7 O -0.571 6.571 8 O -0.219 6.219 9 C -0.424 4.424 10 H 0.080 0.920 11 C 0.002 3.998 12 N -0.893 5.893 13 Si 1.011 2.989 14 H -0.265 1.265 15 H -0.261 1.261 16 H -0.263 1.263 17 C 0.117 3.883 18 C -0.152 4.152 19 C -0.088 4.088 20 C -0.162 4.162 21 C 0.082 3.918 22 N -0.501 5.501 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.278 0.722 31 H 0.125 0.875 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 12.412 5.430 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C -0.121 4.121 4 C -0.038 4.038 5 H 0.128 0.872 6 C 0.249 3.751 7 O -0.469 6.469 8 O -0.126 6.126 9 C -0.500 4.500 10 H 0.097 0.903 11 C -0.199 4.199 12 N -0.529 5.529 13 Si 0.830 3.170 14 H -0.190 1.190 15 H -0.185 1.185 16 H -0.187 1.187 17 C -0.020 4.020 18 C -0.172 4.172 19 C -0.114 4.114 20 C -0.181 4.181 21 C -0.075 4.075 22 N -0.211 5.211 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.690 11.798 5.984 13.337 hybrid contribution 0.599 -0.115 -1.577 1.691 sum -1.091 11.683 4.407 12.534 Atomic orbital electron populations 1.21643 0.94138 1.01710 1.01967 1.21709 0.97201 0.95489 1.03030 1.21427 0.89307 0.98375 1.03029 1.19620 0.98781 0.92042 0.93343 0.87169 1.23794 0.80437 0.81913 0.88978 1.90485 1.40191 1.62066 1.54164 1.83973 1.63385 1.26455 1.38783 1.21377 1.33344 0.98348 0.96894 0.90271 1.26377 0.96076 0.94472 1.02957 1.70055 1.35154 1.08933 1.38807 0.84778 0.78673 0.77889 0.75621 1.19024 1.18467 1.18734 1.20395 0.97479 0.94449 0.89647 1.22356 0.99748 0.95153 0.99935 1.21977 0.95472 0.94353 0.99606 1.22544 1.00312 1.02790 0.92445 1.23332 0.94790 0.88253 1.01161 1.67312 1.11920 1.16634 1.25198 0.90995 0.93144 0.92940 0.92105 0.92191 0.88706 0.92259 0.91294 0.85687 0.82526 0.80741 0.79297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.91 71.98 0.71 -3.48 16 2 C -0.14 -5.18 5.57 30.60 0.17 -5.01 16 3 C -0.08 -2.94 4.65 30.60 0.14 -2.79 16 4 C -0.02 -0.73 2.64 -12.29 -0.03 -0.76 16 5 H 0.11 4.43 8.14 -2.39 -0.02 4.41 16 6 C 0.40 20.49 6.96 71.23 0.50 20.99 16 7 O -0.57 -30.98 12.35 20.77 0.26 -30.72 16 8 O -0.22 -12.60 6.90 14.85 0.10 -12.49 16 9 C -0.42 -25.42 9.65 67.94 0.66 -24.76 16 10 H 0.08 4.84 6.86 -2.91 -0.02 4.82 16 11 C 0.00 0.14 5.49 84.87 0.47 0.61 16 12 N -0.89 -51.68 13.67 21.62 0.30 -51.38 16 13 Si 1.01 43.32 29.55 68.60 2.03 45.35 16 14 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 15 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 17 C 0.12 4.36 5.69 42.56 0.24 4.60 16 18 C -0.15 -5.48 8.27 22.36 0.18 -5.30 16 19 C -0.09 -2.35 10.18 22.47 0.23 -2.12 16 20 C -0.16 -3.45 10.11 22.36 0.23 -3.22 16 21 C 0.08 2.00 11.18 84.67 0.95 2.95 16 22 N -0.50 -16.59 10.27 -183.88 -1.89 -18.48 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 24 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 2.94 5.47 -2.39 -0.01 2.93 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.13 5.16 5.94 -2.91 -0.02 5.14 16 32 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 33 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -71.06 292.11 6.33 -64.73 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.09 Total: 21.30 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.44 Total: -18.30 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -1.59 Total: -69.87 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: 0.36 Total: -43.22 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.06 6.33 -64.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799531688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.096 kcal (2) G-P(sol) polarization free energy of solvation -71.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds