Wall clock time and date at job start Mon Mar 30 2020 18:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 O 1.45201 * 109.46934 * 239.99568 * 2 1 3 5 5 C 1.34222 * 117.00137 * 90.00375 * 4 2 1 6 6 O 1.20833 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00432 * 179.71953 * 5 4 2 8 8 C 1.52996 * 109.47298 * 180.27351 * 7 5 4 9 9 C 1.50701 * 109.46972 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00292 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00289 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00193 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99560 * 0.02562 * 11 9 8 14 14 H 1.48511 * 109.47049 * 90.00369 * 13 11 9 15 15 H 1.48494 * 109.47227 * 209.99778 * 13 11 9 16 16 H 1.48494 * 109.47357 * 330.00296 * 13 11 9 17 17 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 18 18 C 1.38678 * 120.41439 * 264.71978 * 17 2 1 19 19 C 1.38627 * 118.41846 * 179.78452 * 18 17 2 20 20 C 1.38227 * 119.16181 * 0.50870 * 19 18 17 21 21 N 1.31848 * 120.76162 * 359.73099 * 20 19 18 22 22 C 1.31883 * 121.73049 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 24 24 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 26 26 H 1.09000 * 109.47190 * 300.28287 * 7 5 4 27 27 H 1.09006 * 109.46468 * 60.27870 * 7 5 4 28 28 H 1.08994 * 109.47515 * 300.00215 * 8 7 5 29 29 H 1.09006 * 109.46938 * 60.00806 * 8 7 5 30 30 H 0.97008 * 120.00190 * 180.02562 * 12 11 9 31 31 H 1.08000 * 120.79068 * 0.02562 * 18 17 2 32 32 H 1.08004 * 120.41543 * 180.21844 * 19 18 17 33 33 H 1.07997 * 119.61966 * 179.74745 * 20 19 18 34 34 H 1.07995 * 119.62016 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 -1.1855 5 6 2.2171 0.0638 -2.2811 6 8 1.9983 1.2517 -2.2504 7 6 2.7247 -0.5763 -3.5474 8 6 2.8746 0.4907 -4.6336 9 6 3.3828 -0.1494 -5.8997 10 1 3.5789 -1.2111 -5.9271 11 6 3.5975 0.6204 -7.0233 12 7 4.0405 0.0618 -8.1283 13 14 3.2591 2.4569 -6.9758 14 1 4.4876 3.1758 -6.5523 15 1 2.8552 2.9209 -8.3273 16 1 2.1656 2.7339 -6.0101 17 6 2.0322 -0.7105 1.2305 18 6 2.3700 0.0082 2.3674 19 6 2.8232 -0.6877 3.4774 20 6 2.9328 -2.0640 3.4110 21 7 2.6072 -2.7141 2.3111 22 6 2.1670 -2.0857 1.2384 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 3.6927 -1.0400 -3.3574 27 1 2.0169 -1.3359 -3.8795 28 1 1.9066 0.9543 -4.8236 29 1 3.5824 1.2503 -4.3015 30 1 4.1919 0.6034 -8.9187 31 1 2.2783 1.0841 2.3889 32 1 3.0918 -0.1607 4.3811 33 1 3.2890 -2.6132 4.2700 34 1 1.9097 -2.6522 0.3558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:27 Heat of formation + Delta-G solvation = -65.116564 kcal Electronic energy + Delta-G solvation = -17310.982091 eV Core-core repulsion = 14401.615321 eV Total energy + Delta-G solvation = -2909.366770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.73999 -39.88363 -36.66436 -33.79287 -33.57826 -32.18816 -31.39527 -29.75953 -26.62154 -24.65143 -23.87452 -22.39569 -21.03328 -19.80316 -17.72085 -17.50777 -16.84565 -16.23453 -16.03843 -15.95737 -14.76288 -14.35229 -14.17523 -13.84757 -13.64697 -13.33094 -13.18311 -12.81330 -12.63287 -12.36219 -11.89361 -11.57553 -11.35213 -11.04936 -10.69613 -10.35084 -10.18662 -10.05120 -9.97478 -9.73568 -9.64688 -9.28106 -9.23878 -8.57366 -6.08672 -4.08721 0.81531 1.00828 2.62740 2.88036 3.32699 3.39816 3.48347 3.57300 4.14597 4.44540 4.48425 4.57030 4.69217 4.78905 4.91510 5.00631 5.15120 5.24500 5.25975 5.47855 5.61421 5.64240 5.81595 5.89071 5.95986 5.97780 6.06758 6.42511 6.46625 6.73756 7.20990 7.28438 7.68717 7.74537 8.14553 8.45195 8.93740 9.52941 11.03911 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042505 B = 0.004131 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.580836 B = 6775.868037 C = 7033.631944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 H 0.094 0.906 4 O -0.356 6.356 5 C 0.460 3.540 6 O -0.510 6.510 7 C -0.096 4.096 8 C -0.002 4.002 9 C -0.528 4.528 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.138 4.138 18 C -0.065 4.065 19 C -0.175 4.175 20 C 0.097 3.903 21 N -0.485 5.485 22 C 0.126 3.874 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 -1.180 22.740 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.112 0.888 4 O -0.274 6.274 5 C 0.304 3.696 6 O -0.397 6.397 7 C -0.133 4.133 8 C -0.039 4.039 9 C -0.566 4.566 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.140 4.140 18 C -0.091 4.091 19 C -0.194 4.194 20 C -0.060 4.060 21 N -0.193 5.193 22 C -0.030 4.030 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.159 -1.692 22.571 23.215 hybrid contribution -0.188 2.072 0.024 2.080 sum -5.347 0.380 22.595 23.222 Atomic orbital electron populations 1.22168 0.93155 1.03369 1.03301 1.21226 0.94555 0.96351 0.80672 0.88804 1.86616 1.77499 1.42969 1.20319 1.24779 0.73514 0.86270 0.85050 1.90611 1.48160 1.17015 1.83899 1.21563 1.02489 1.01418 0.87850 1.19482 0.97925 0.93735 0.92788 1.21030 1.44692 0.96899 0.93929 0.90620 1.24954 0.94273 0.98628 0.95230 1.69902 1.45663 1.36211 1.02049 0.86806 0.79599 0.85781 0.77414 1.20175 1.21296 1.18615 1.20714 1.02020 0.95880 0.95371 1.21433 0.94869 1.00614 0.92192 1.22103 1.01899 0.95951 0.99491 1.22848 0.95247 0.91849 0.96025 1.67785 1.10674 1.40938 0.99951 1.22749 0.92890 0.91293 0.96105 0.91056 0.91296 0.90919 0.88269 0.88178 0.95585 0.96087 0.92578 0.84632 0.84564 0.82703 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.53 37.16 0.35 -1.40 16 2 C 0.13 1.61 2.79 -27.88 -0.08 1.53 16 3 H 0.09 1.24 7.07 -51.93 -0.37 0.88 16 4 O -0.36 -5.38 9.05 -39.24 -0.36 -5.74 16 5 C 0.46 8.30 7.93 36.00 0.29 8.58 16 6 O -0.51 -10.46 15.20 -18.76 -0.29 -10.75 16 7 C -0.10 -1.83 5.75 -27.89 -0.16 -1.99 16 8 C 0.00 -0.04 3.33 -27.88 -0.09 -0.14 16 9 C -0.53 -14.80 9.66 -34.44 -0.33 -15.13 16 10 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 13 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 17 C -0.14 -1.56 5.02 -104.48 -0.52 -2.08 16 18 C -0.07 -0.61 9.84 -39.28 -0.39 -0.99 16 19 C -0.17 -1.42 10.11 -39.44 -0.40 -1.82 16 20 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 21 N -0.49 -5.83 10.36 -13.26 -0.14 -5.97 16 22 C 0.13 1.51 10.52 -17.55 -0.18 1.33 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 27 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 28 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 29 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.16 1.87 7.63 -52.49 -0.40 1.47 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -32.69 298.51 -6.49 -39.18 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.50 Total: -2.40 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.81 Total: -9.44 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.64 Total: -32.70 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.64 Total: -16.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.69 -6.49 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.937 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds