Wall clock time and date at job start Mon Mar 30 2020 18:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47532 * 2 1 4 4 O 1.45200 * 109.47400 * 119.99903 * 2 1 3 5 5 C 1.34228 * 117.00214 * 270.00249 * 4 2 1 6 6 O 1.20830 * 119.99695 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00293 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47213 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47213 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99805 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00168 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99686 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00032 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46717 * 90.00109 * 13 11 9 15 15 H 1.48497 * 109.47096 * 209.99879 * 13 11 9 16 16 H 1.48501 * 109.47297 * 330.00258 * 13 11 9 17 17 C 1.50705 * 109.47113 * 239.99696 * 2 1 3 18 18 C 1.38675 * 120.41661 * 99.99890 * 17 2 1 19 19 C 1.38628 * 118.42013 * 179.97438 * 18 17 2 20 20 C 1.38220 * 119.16326 * 359.97438 * 19 18 17 21 21 N 1.31857 * 120.76198 * 0.02562 * 20 19 18 22 22 C 1.31883 * 121.72627 * 359.97438 * 21 20 19 23 23 H 1.08995 * 109.47257 * 300.00058 * 1 2 3 24 24 H 1.08996 * 109.47052 * 60.00116 * 1 2 3 25 25 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47250 * 300.00338 * 7 5 4 27 27 H 1.08997 * 109.46932 * 59.99766 * 7 5 4 28 28 H 1.08993 * 109.47107 * 300.00247 * 8 7 5 29 29 H 1.09005 * 109.46751 * 60.00158 * 8 7 5 30 30 H 0.96998 * 119.99453 * 180.02562 * 12 11 9 31 31 H 1.07998 * 120.78542 * 359.70640 * 18 17 2 32 32 H 1.07996 * 120.41751 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.62169 * 180.02562 * 20 19 18 34 34 H 1.08007 * 119.61759 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2172 0.0640 2.2811 6 8 1.9982 1.2519 2.2503 7 6 2.7183 -0.5772 3.5495 8 6 2.8636 0.4891 4.6371 9 6 3.3642 -0.1522 5.9056 10 1 3.5596 -1.2140 5.9332 11 6 3.5727 0.6166 7.0310 12 7 3.3343 1.9096 6.9974 13 14 4.1925 -0.1784 8.6036 14 1 5.6773 -0.1571 8.6171 15 1 3.6760 0.5736 9.7753 16 1 3.7170 -1.5838 8.6685 17 6 2.0323 -0.7105 -1.2305 18 6 2.4621 0.0130 -2.3327 19 6 2.9165 -0.6827 -3.4423 20 6 2.9266 -2.0646 -3.4132 21 7 2.5103 -2.7198 -2.3474 22 6 2.0715 -2.0910 -1.2743 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.0089 -1.3369 3.8774 27 1 3.6872 -1.0408 3.3639 28 1 3.5732 1.2485 4.3089 29 1 1.8949 0.9531 4.8227 30 1 3.4813 2.4505 7.7891 31 1 2.4392 1.0928 -2.3283 32 1 3.2584 -0.1517 -4.3184 33 1 3.2794 -2.6140 -4.2734 34 1 1.7389 -2.6618 -0.4198 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:29 Heat of formation + Delta-G solvation = -68.380484 kcal Electronic energy + Delta-G solvation = -17248.322386 eV Core-core repulsion = 14338.814082 eV Total energy + Delta-G solvation = -2909.508304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66233 -39.77993 -36.52837 -33.70783 -33.53895 -32.16219 -31.10766 -29.66809 -26.18016 -24.59214 -23.83644 -22.56115 -21.11181 -19.77184 -17.55330 -17.41691 -16.58190 -16.18100 -15.87759 -15.77022 -14.68972 -14.47452 -14.23313 -13.80652 -13.54305 -13.28576 -13.02179 -12.70361 -12.31325 -12.20409 -11.79711 -11.40732 -11.18293 -10.97108 -10.65213 -10.56858 -10.07327 -10.00956 -9.95263 -9.62342 -9.58685 -9.22806 -9.16698 -8.38938 -6.02831 -4.07721 0.85183 1.04802 2.77699 2.99677 3.31177 3.37503 3.40541 3.62153 4.19446 4.43129 4.53446 4.61199 4.74453 4.83612 4.99504 5.07999 5.24089 5.30819 5.32763 5.53703 5.68968 5.72819 5.86111 5.95639 6.08447 6.10801 6.19648 6.46813 6.62626 6.90016 7.64794 7.71295 7.77522 7.96406 8.22438 8.38004 8.99353 9.56518 11.08184 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043249 B = 0.003856 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.251184 B = 7258.749575 C = 7531.010523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 H 0.094 0.906 4 O -0.358 6.358 5 C 0.458 3.542 6 O -0.504 6.504 7 C -0.103 4.103 8 C 0.033 3.967 9 C -0.529 4.529 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.137 4.137 18 C -0.064 4.064 19 C -0.175 4.175 20 C 0.097 3.903 21 N -0.486 5.486 22 C 0.126 3.874 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 -5.424 -19.700 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.112 0.888 4 O -0.277 6.277 5 C 0.302 3.698 6 O -0.390 6.390 7 C -0.141 4.141 8 C -0.004 4.004 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.139 4.139 18 C -0.090 4.090 19 C -0.195 4.195 20 C -0.060 4.060 21 N -0.194 5.194 22 C -0.030 4.030 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.374 -5.807 -19.634 20.751 hybrid contribution 0.329 0.808 0.772 1.165 sum -3.046 -4.998 -18.862 19.749 Atomic orbital electron populations 1.22165 0.93243 1.03267 1.03314 1.21215 0.94522 0.96390 0.80743 0.88847 1.86632 1.77634 1.43094 1.20337 1.24815 0.73656 0.86386 0.84943 1.90626 1.47689 1.16944 1.83775 1.21782 1.01792 1.02016 0.88494 1.19021 0.98562 0.92452 0.90376 1.21156 1.45105 0.94729 0.95705 0.92285 1.25019 0.95460 0.94824 0.99011 1.69993 1.48263 1.05030 1.29519 0.86539 0.79023 0.79370 0.82737 1.20599 1.21185 1.19756 1.20726 1.01679 0.95815 0.95636 1.21469 0.94472 1.00733 0.92364 1.22102 1.02002 0.95905 0.99441 1.22835 0.95116 0.91799 0.96270 1.67779 1.10193 1.41152 1.00320 1.22728 0.93395 0.91309 0.95606 0.91000 0.90978 0.91389 0.88842 0.88936 0.95620 0.95560 0.92845 0.84587 0.84577 0.82736 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.53 37.16 0.35 -1.52 16 2 C 0.13 1.70 2.78 -27.88 -0.08 1.62 16 3 H 0.09 1.32 7.05 -51.93 -0.37 0.96 16 4 O -0.36 -5.74 9.23 -39.25 -0.36 -6.10 16 5 C 0.46 8.82 7.93 36.01 0.29 9.11 16 6 O -0.50 -11.13 15.20 -18.75 -0.29 -11.41 16 7 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 8 C 0.03 0.86 4.26 -27.88 -0.12 0.75 16 9 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 10 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 13 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.14 -1.62 4.99 -104.48 -0.52 -2.14 16 18 C -0.06 -0.64 9.82 -39.28 -0.39 -1.02 16 19 C -0.17 -1.49 10.11 -39.44 -0.40 -1.89 16 20 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 21 N -0.49 -5.96 10.36 -13.25 -0.14 -6.10 16 22 C 0.13 1.55 10.53 -17.55 -0.18 1.37 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.16 1.89 7.79 -52.48 -0.41 1.48 16 LS Contribution 302.36 15.07 4.56 4.56 Total: -1.00 -32.61 302.36 -6.87 -39.48 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.54 Total: -1.93 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.82 Total: -8.69 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.60 Total: -32.27 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.65 Total: -17.51 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.61 -6.87 -39.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.902 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds