Wall clock time and date at job start Mon Mar 30 2020 18:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47532 * 2 1 4 4 O 1.45200 * 109.47400 * 119.99903 * 2 1 3 5 5 C 1.34228 * 117.00214 * 270.00249 * 4 2 1 6 6 O 1.20830 * 119.99695 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00293 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47213 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47213 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99805 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00168 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99686 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00032 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46717 * 90.00109 * 13 11 9 15 15 H 1.48497 * 109.47096 * 209.99879 * 13 11 9 16 16 H 1.48501 * 109.47297 * 330.00258 * 13 11 9 17 17 C 1.50705 * 109.47113 * 239.99696 * 2 1 3 18 18 C 1.38675 * 120.41661 * 99.99890 * 17 2 1 19 19 C 1.38628 * 118.42013 * 179.97438 * 18 17 2 20 20 C 1.38220 * 119.16326 * 359.97438 * 19 18 17 21 21 N 1.31857 * 120.76198 * 0.02562 * 20 19 18 22 22 C 1.31883 * 121.72627 * 359.97438 * 21 20 19 23 23 H 1.08995 * 109.47257 * 300.00058 * 1 2 3 24 24 H 1.08996 * 109.47052 * 60.00116 * 1 2 3 25 25 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47250 * 300.00338 * 7 5 4 27 27 H 1.08997 * 109.46932 * 59.99766 * 7 5 4 28 28 H 1.08993 * 109.47107 * 300.00247 * 8 7 5 29 29 H 1.09005 * 109.46751 * 60.00158 * 8 7 5 30 30 H 0.96998 * 119.99453 * 180.02562 * 12 11 9 31 31 H 1.07998 * 120.78542 * 359.70640 * 18 17 2 32 32 H 1.07996 * 120.41751 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.62169 * 180.02562 * 20 19 18 34 34 H 1.08007 * 119.61759 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2172 0.0640 2.2811 6 8 1.9982 1.2519 2.2503 7 6 2.7183 -0.5772 3.5495 8 6 2.8636 0.4891 4.6371 9 6 3.3642 -0.1522 5.9056 10 1 3.5596 -1.2140 5.9332 11 6 3.5727 0.6166 7.0310 12 7 3.3343 1.9096 6.9974 13 14 4.1925 -0.1784 8.6036 14 1 5.6773 -0.1571 8.6171 15 1 3.6760 0.5736 9.7753 16 1 3.7170 -1.5838 8.6685 17 6 2.0323 -0.7105 -1.2305 18 6 2.4621 0.0130 -2.3327 19 6 2.9165 -0.6827 -3.4423 20 6 2.9266 -2.0646 -3.4132 21 7 2.5103 -2.7198 -2.3474 22 6 2.0715 -2.0910 -1.2743 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.0089 -1.3369 3.8774 27 1 3.6872 -1.0408 3.3639 28 1 3.5732 1.2485 4.3089 29 1 1.8949 0.9531 4.8227 30 1 3.4813 2.4505 7.7891 31 1 2.4392 1.0928 -2.3283 32 1 3.2584 -0.1517 -4.3184 33 1 3.2794 -2.6140 -4.2734 34 1 1.7389 -2.6618 -0.4198 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:29 Heat of formation + Delta-G solvation = -87.767574 kcal Electronic energy + Delta-G solvation = -17249.163073 eV Core-core repulsion = 14338.814082 eV Total energy + Delta-G solvation = -2910.348991 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.81699 -40.91659 -37.93174 -35.65130 -34.68489 -33.16954 -32.84904 -30.58199 -28.10516 -25.66854 -24.70927 -24.13200 -22.34624 -21.30744 -19.15152 -18.41983 -18.08168 -17.41072 -17.23621 -16.97909 -16.47216 -15.74874 -15.34964 -14.93424 -14.66454 -14.32484 -14.26596 -14.03460 -13.93288 -13.41483 -13.24708 -12.84808 -12.79622 -12.50961 -12.33212 -12.00779 -11.83866 -11.73517 -11.42705 -11.26101 -10.81259 -10.57767 -10.43474 -10.02640 -8.20217 -6.33859 0.04297 0.27375 1.22674 1.43436 1.45691 1.56573 1.68601 2.43157 2.81067 3.13715 3.33160 3.68090 3.78545 3.82430 3.99913 4.03079 4.10774 4.27763 4.40823 4.44605 4.53626 4.66363 4.71667 4.83530 4.93794 5.05084 5.11984 5.23872 5.39975 5.47619 5.55129 5.71812 5.80464 6.13190 6.77687 6.85842 6.98314 7.36433 8.92388 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043249 B = 0.003856 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.251184 B = 7258.749575 C = 7531.010523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.083 0.917 4 O -0.350 6.350 5 C 0.468 3.532 6 O -0.540 6.540 7 C -0.095 4.095 8 C 0.039 3.961 9 C -0.545 4.545 10 H 0.077 0.923 11 C -0.003 4.003 12 N -0.935 5.935 13 Si 0.973 3.027 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.256 1.256 17 C -0.150 4.150 18 C -0.069 4.069 19 C -0.164 4.164 20 C 0.092 3.908 21 N -0.512 5.512 22 C 0.111 3.889 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.113 0.887 28 H -0.010 1.010 29 H -0.008 1.008 30 H 0.264 0.736 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -6.940 -21.018 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.101 0.899 4 O -0.268 6.268 5 C 0.313 3.687 6 O -0.429 6.429 7 C -0.132 4.132 8 C 0.002 3.998 9 C -0.583 4.583 10 H 0.095 0.905 11 C -0.201 4.201 12 N -0.575 5.575 13 Si 0.797 3.203 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.180 1.180 17 C -0.152 4.152 18 C -0.095 4.095 19 C -0.183 4.183 20 C -0.065 4.065 21 N -0.220 5.220 22 C -0.045 4.045 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.008 0.992 29 H 0.010 0.990 30 H 0.073 0.927 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.202 0.798 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.829 -7.360 -20.977 22.410 hybrid contribution 0.155 1.290 1.008 1.645 sum -2.673 -6.070 -19.969 21.042 Atomic orbital electron populations 1.22152 0.91887 1.03931 1.03548 1.21463 0.95700 0.95863 0.80089 0.89869 1.86584 1.77194 1.42569 1.20404 1.24462 0.72962 0.85722 0.85568 1.90617 1.49375 1.18427 1.84502 1.21523 1.03751 1.00416 0.87550 1.18795 0.95544 0.93167 0.92341 1.21645 1.44638 0.95668 0.96309 0.90534 1.26083 0.95565 0.95289 1.03177 1.70156 1.49685 1.06915 1.30738 0.85322 0.78529 0.78878 0.77545 1.19755 1.21118 1.18000 1.20609 1.03284 0.95756 0.95540 1.21787 0.93781 1.01801 0.92106 1.22483 1.00297 0.95592 0.99931 1.23433 0.94029 0.92762 0.96265 1.67783 1.11180 1.42018 1.01062 1.22700 0.94326 0.91510 0.95984 0.92839 0.88605 0.90493 0.86546 0.86898 0.99186 0.98999 0.92743 0.82809 0.81012 0.79800 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.53 71.98 0.69 -2.86 16 2 C 0.12 3.27 2.78 29.85 0.08 3.36 16 3 H 0.08 2.38 7.05 -2.39 -0.02 2.36 16 4 O -0.35 -11.14 9.23 -51.39 -0.47 -11.61 16 5 C 0.47 18.26 7.93 71.24 0.56 18.83 16 6 O -0.54 -24.74 15.20 21.95 0.33 -24.40 16 7 C -0.10 -3.84 5.75 29.85 0.17 -3.67 16 8 C 0.04 2.10 4.26 29.85 0.13 2.23 16 9 C -0.54 -30.47 9.11 25.60 0.23 -30.23 16 10 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 11 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 12 N -0.94 -58.05 13.29 21.45 0.28 -57.76 16 13 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 17 C -0.15 -3.39 4.99 -19.77 -0.10 -3.48 16 18 C -0.07 -1.21 9.82 22.47 0.22 -0.98 16 19 C -0.16 -2.26 10.11 22.36 0.23 -2.03 16 20 C 0.09 1.51 11.18 84.68 0.95 2.46 16 21 N -0.51 -11.81 10.36 -195.85 -2.03 -13.84 16 22 C 0.11 2.64 10.53 84.67 0.89 3.53 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 24 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 27 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 28 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 29 H -0.01 -0.51 8.10 -2.38 -0.02 -0.53 16 30 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.16 3.65 7.79 -2.91 -0.02 3.63 16 Total: -1.00 -72.32 302.36 5.74 -66.58 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.08 Total: 7.87 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.51 Total: -12.58 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.74 Total: -71.60 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.14 Total: -36.02 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -72.32 5.74 -66.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.186 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds