Wall clock time and date at job start Mon Mar 30 2020 18:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37095 * 119.99781 * 2 1 4 4 H 1.08000 * 120.00088 * 188.01931 * 3 2 1 5 5 C 1.38951 * 120.00138 * 8.01626 * 3 2 1 6 6 N 1.31412 * 120.00143 * 10.96245 * 5 3 2 7 7 Si 1.86801 * 120.00205 * 190.96793 * 5 3 2 8 8 H 1.48500 * 109.47112 * 89.99857 * 7 5 3 9 9 H 1.48505 * 109.47111 * 209.99951 * 7 5 3 10 10 H 1.48501 * 109.46829 * 329.99744 * 7 5 3 11 11 C 1.34780 * 120.00213 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99758 * 175.13913 * 11 2 1 13 13 C 1.50694 * 119.99808 * 355.14019 * 11 2 1 14 14 C 1.53001 * 109.46886 * 184.39304 * 13 11 2 15 15 O 1.42898 * 109.47126 * 304.38885 * 13 11 2 16 16 C 1.50697 * 109.47514 * 64.39296 * 13 11 2 17 17 C 1.38228 * 119.99994 * 222.92967 * 16 13 11 18 18 C 1.38238 * 120.00119 * 180.02562 * 17 16 13 19 19 C 1.38237 * 119.99702 * 359.95109 * 18 17 16 20 20 C 1.38240 * 120.00260 * 0.27962 * 19 18 17 21 21 C 1.38238 * 119.99683 * 42.94620 * 16 13 11 22 22 H 1.09001 * 109.46877 * 174.20220 * 1 2 3 23 23 H 1.08993 * 109.47687 * 294.19750 * 1 2 3 24 24 H 1.08995 * 109.47135 * 54.20510 * 1 2 3 25 25 H 0.96992 * 120.00410 * 180.02562 * 6 5 3 26 26 H 1.08996 * 109.47177 * 300.00031 * 14 13 11 27 27 H 1.09005 * 109.47275 * 59.99519 * 14 13 11 28 28 H 1.08999 * 109.47486 * 180.02562 * 14 13 11 29 29 H 0.96697 * 114.00020 * 64.47684 * 15 13 11 30 30 H 1.07993 * 120.00440 * 359.97438 * 17 16 13 31 31 H 1.07994 * 120.00307 * 179.97438 * 18 17 16 32 32 H 1.07999 * 120.00041 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.99871 * 179.72437 * 20 19 18 34 34 H 1.07995 * 119.99911 * 0.02562 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2225 1.1919 -0.1305 5 6 1.4658 2.3848 0.1678 6 7 0.2053 2.3746 0.5394 7 14 2.3371 4.0092 -0.1349 8 1 2.1724 4.4016 -1.5576 9 1 1.7494 5.0565 0.7387 10 1 3.7821 3.8608 0.1737 11 6 2.1389 -1.1672 0.0005 12 8 3.3485 -1.1690 -0.0885 13 6 1.3895 -2.4699 0.1117 14 6 2.3874 -3.6264 0.1988 15 8 0.5764 -2.4529 1.2866 16 6 0.5148 -2.6514 -1.1020 17 6 -0.7785 -3.1176 -0.9583 18 6 -1.5807 -3.2847 -2.0716 19 6 -1.0898 -2.9846 -3.3286 20 6 0.2052 -2.5229 -3.4727 21 6 1.0061 -2.3521 -2.3590 22 1 -0.3633 -1.0224 -0.1038 23 1 -0.3634 0.4212 0.9373 24 1 -0.3633 0.6010 -0.8335 25 1 -0.2727 3.2104 0.6562 26 1 3.0076 -3.6394 -0.6974 27 1 3.0201 -3.4951 1.0766 28 1 1.8454 -4.5687 0.2787 29 1 -0.1249 -1.7873 1.2700 30 1 -1.1621 -3.3522 0.0236 31 1 -2.5910 -3.6493 -1.9595 32 1 -1.7166 -3.1147 -4.1984 33 1 0.5902 -2.2926 -4.4552 34 1 2.0168 -1.9885 -2.4712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817526542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:35 Heat of formation + Delta-G solvation = -35.099178 kcal Electronic energy + Delta-G solvation = -18979.768503 eV Core-core repulsion = 16071.703384 eV Total energy + Delta-G solvation = -2908.065118 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23939 -38.02011 -36.02303 -34.91229 -31.81944 -31.51577 -30.59222 -28.93649 -26.54103 -25.06209 -23.28594 -22.29456 -21.21760 -19.16296 -17.47387 -17.08681 -16.42368 -15.64839 -14.94753 -14.77918 -14.24621 -14.12026 -13.78923 -13.39674 -13.14970 -12.65709 -12.32993 -12.15171 -11.84462 -11.75595 -11.51524 -11.29394 -11.08209 -10.94145 -10.86276 -10.75332 -10.38181 -10.22221 -10.17408 -9.12471 -8.67123 -8.66091 -8.07484 -7.86250 -6.29483 -3.86814 1.56243 1.64927 3.11730 3.22116 3.27640 3.69111 3.99838 4.08104 4.67115 4.76931 4.91949 5.16639 5.17981 5.23271 5.38150 5.61291 5.68110 5.77114 5.84389 6.10937 6.13324 6.22833 6.31128 6.33086 6.59600 6.69099 6.74538 6.84630 6.93214 7.22270 7.26694 7.52321 7.93802 8.01231 8.41972 9.12005 9.37112 9.88517 10.64408 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.008237 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.851653 B = 3398.418851 C = 3766.113280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.434 5.434 3 C -0.303 4.303 4 H 0.105 0.895 5 C 0.028 3.972 6 N -0.883 5.883 7 Si 0.930 3.070 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.422 3.578 12 O -0.587 6.587 13 C 0.165 3.835 14 C -0.110 4.110 15 O -0.556 6.556 16 C -0.098 4.098 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.100 4.100 22 H 0.033 0.967 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.267 0.733 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.379 0.621 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 -8.392 -4.705 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.152 5.152 3 C -0.431 4.431 4 H 0.123 0.877 5 C -0.174 4.174 6 N -0.524 5.524 7 Si 0.757 3.243 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.209 3.791 12 O -0.472 6.472 13 C 0.120 3.880 14 C -0.167 4.167 15 O -0.365 6.365 16 C -0.099 4.099 17 C -0.131 4.131 18 C -0.140 4.140 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.118 4.118 22 H 0.051 0.949 23 H 0.104 0.896 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.232 0.768 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.679 -8.681 -4.523 10.849 hybrid contribution -0.319 1.488 -0.357 1.563 sum -4.998 -7.193 -4.880 10.027 Atomic orbital electron populations 1.22108 0.80901 0.96980 1.04894 1.43675 1.05711 1.04890 1.60971 1.19822 0.94095 0.82095 1.47069 0.87712 1.25313 0.95977 0.99810 0.96290 1.70053 1.09626 1.27553 1.45181 0.85851 0.79543 0.80650 0.78247 1.20350 1.20863 1.19331 1.20298 0.88215 0.84856 0.85753 1.90508 1.13840 1.86566 1.56307 1.20243 0.89527 0.95561 0.82636 1.21434 0.97045 0.94614 1.03638 1.86515 1.48292 1.61795 1.39929 1.20454 0.95071 0.99029 0.95331 1.20984 0.93421 0.99447 0.99239 1.21047 0.99481 1.00858 0.92609 1.21093 0.95788 1.00264 0.97263 1.21089 0.94306 0.99741 0.98443 1.21063 1.00474 0.98364 0.91877 0.94854 0.89577 0.92251 0.92222 0.90746 0.91175 0.92333 0.76849 0.85447 0.86246 0.86461 0.86231 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.13 7.12 59.84 0.43 2.55 16 2 N -0.43 -11.18 3.03 -122.20 -0.37 -11.55 16 3 C -0.30 -8.47 9.54 -14.93 -0.14 -8.62 16 4 H 0.11 3.08 7.21 -52.49 -0.38 2.70 16 5 C 0.03 0.75 5.34 -17.47 -0.09 0.66 16 6 N -0.88 -23.04 9.79 55.50 0.54 -22.50 16 7 Si 0.93 20.79 29.57 -169.99 -5.03 15.77 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 C 0.42 10.46 5.57 -10.99 -0.06 10.40 16 12 O -0.59 -16.33 15.58 5.55 0.09 -16.25 16 13 C 0.16 3.29 0.92 -92.93 -0.09 3.20 16 14 C -0.11 -2.00 8.10 37.16 0.30 -1.69 16 15 O -0.56 -10.72 11.79 -35.23 -0.42 -11.14 16 16 C -0.10 -1.73 2.97 -104.63 -0.31 -2.04 16 17 C -0.11 -1.71 8.12 -39.58 -0.32 -2.03 16 18 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 19 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 20 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 21 C -0.10 -1.75 9.13 -39.58 -0.36 -2.12 16 22 H 0.03 0.64 2.38 -51.93 -0.12 0.52 16 23 H 0.09 2.04 6.66 -51.93 -0.35 1.69 16 24 H 0.06 1.42 7.55 -51.93 -0.39 1.03 16 25 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 26 H 0.07 1.32 8.05 -51.93 -0.42 0.91 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.38 6.80 5.49 45.56 0.25 7.05 16 30 H 0.13 1.77 7.10 -52.49 -0.37 1.40 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.12 2.39 7.50 -52.49 -0.39 1.99 16 LS Contribution 278.70 15.07 4.20 4.20 Total: -1.00 -30.62 278.70 -6.25 -36.87 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.42 Total: 10.51 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.84 Total: -5.91 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.17 Total: -34.04 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.33 Total: -27.39 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.62 -6.25 -36.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817526542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.766 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds