Wall clock time and date at job start Mon Mar 30 2020 18:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35626 * 119.99843 * 2 1 4 4 C 1.41552 * 120.00052 * 180.02562 * 3 2 1 5 5 O 1.21778 * 119.99833 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00131 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00256 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46596 * 325.00243 * 7 6 4 9 9 C 1.53006 * 109.47249 * 84.99846 * 7 6 4 10 10 C 1.50698 * 109.47583 * 205.00282 * 7 6 4 11 11 H 1.08004 * 119.99528 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00356 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99554 * 359.97438 * 12 10 7 14 14 Si 1.86790 * 120.00086 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47245 * 89.99579 * 14 12 10 16 16 H 1.48501 * 109.47356 * 209.99508 * 14 12 10 17 17 H 1.48499 * 109.47321 * 329.99647 * 14 12 10 18 18 C 1.41603 * 119.99903 * 180.02562 * 2 1 3 19 19 C 1.37947 * 126.10463 * 294.99830 * 18 2 1 20 20 C 1.40317 * 106.52885 * 179.97438 * 19 18 2 21 21 C 1.35155 * 107.20477 * 359.97438 * 20 19 18 22 22 O 1.34020 * 109.03504 * 359.77308 * 21 20 19 23 23 H 1.09005 * 109.47338 * 90.00074 * 1 2 3 24 24 H 1.08998 * 109.47061 * 210.00125 * 1 2 3 25 25 H 1.09000 * 109.47165 * 329.99655 * 1 2 3 26 26 H 1.08003 * 119.99898 * 0.02562 * 3 2 1 27 27 H 0.97005 * 120.00370 * 359.97438 * 6 4 3 28 28 H 1.09001 * 109.47002 * 60.00085 * 9 7 6 29 29 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47050 * 300.00351 * 9 7 6 31 31 H 0.97005 * 119.99198 * 180.02562 * 13 12 10 32 32 H 1.07998 * 126.73372 * 359.97438 * 19 18 2 33 33 H 1.07996 * 126.39527 * 179.97438 * 20 19 18 34 34 H 1.07996 * 125.48106 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 3.6006 1.1746 -0.0005 5 8 4.2095 0.1200 -0.0015 6 7 4.2745 2.3418 -0.0011 7 6 5.7395 2.3419 -0.0022 8 1 6.1032 1.5000 0.5869 9 6 6.2484 2.2161 -1.4397 10 6 6.2423 3.6295 0.5979 11 1 5.5407 4.3736 0.9450 12 6 7.5979 3.8581 0.7028 13 7 8.4522 2.9521 0.2796 14 14 8.2211 5.4545 1.4460 15 1 8.3876 5.2862 2.9121 16 1 9.5286 5.8071 0.8366 17 1 7.2425 6.5394 1.1804 18 6 2.2150 -1.2263 -0.0005 19 6 2.2135 -2.1662 1.0092 20 6 3.0461 -3.2119 0.5823 21 6 3.5117 -2.8781 -0.6418 22 8 3.0065 -1.6871 -0.9917 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6451 2.1099 0.0004 27 1 3.7895 3.1819 -0.0014 28 1 5.8846 3.0579 -2.0288 29 1 7.3383 2.2157 -1.4404 30 1 5.8847 1.2847 -1.8737 31 1 9.4059 3.1129 0.3538 32 1 1.6769 -2.1085 1.9446 33 1 3.2726 -4.1149 1.1298 34 1 4.1804 -3.4764 -1.2428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824687846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:01 Heat of formation + Delta-G solvation = -28.040229 kcal Electronic energy + Delta-G solvation = -17990.980940 eV Core-core repulsion = 15083.221921 eV Total energy + Delta-G solvation = -2907.759019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.27130 -40.68525 -37.07633 -35.95977 -34.31936 -33.68311 -31.36435 -29.56520 -28.75390 -27.35560 -24.25831 -22.85499 -22.45453 -21.40806 -20.28737 -19.18249 -17.84347 -17.51310 -16.98222 -16.70978 -16.19575 -15.75096 -15.17857 -14.74948 -14.34020 -14.18729 -13.98197 -13.71826 -13.69155 -13.40354 -13.23398 -12.96718 -12.89109 -12.76899 -12.68067 -12.28675 -12.13037 -11.12989 -10.85896 -10.70857 -10.60167 -10.33110 -9.69208 -8.93987 -8.18722 -6.36749 -0.13551 1.02462 1.43890 1.44870 1.55819 1.79430 2.32397 2.38139 2.59883 2.80026 3.11708 3.85348 4.00538 4.20930 4.26506 4.42376 4.55831 4.70370 4.79896 4.86376 4.89719 4.98543 5.01672 5.08378 5.15619 5.32623 5.40777 5.50291 5.61324 5.68588 5.74877 5.93351 6.08632 6.32051 6.71605 7.00667 7.31516 7.59846 8.87854 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033376 B = 0.005397 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.726123 B = 5187.247344 C = 5614.173375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.022 3.978 3 C -0.202 4.202 4 C 0.514 3.486 5 O -0.585 6.585 6 N -0.702 5.702 7 C 0.273 3.727 8 H -0.006 1.006 9 C -0.130 4.130 10 C -0.547 4.547 11 H 0.074 0.926 12 C 0.012 3.988 13 N -0.920 5.920 14 Si 0.976 3.024 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.258 1.258 18 C 0.013 3.987 19 C -0.211 4.211 20 C -0.223 4.223 21 C -0.052 4.052 22 O -0.172 6.172 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.175 0.825 27 H 0.405 0.595 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.007 0.993 31 H 0.265 0.735 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.489 -5.173 -0.470 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.020 3.980 3 C -0.222 4.222 4 C 0.304 3.696 5 O -0.469 6.469 6 N -0.351 5.351 7 C 0.169 3.831 8 H 0.012 0.988 9 C -0.189 4.189 10 C -0.585 4.585 11 H 0.092 0.908 12 C -0.188 4.188 13 N -0.558 5.558 14 Si 0.800 3.200 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.182 1.182 18 C -0.037 4.037 19 C -0.230 4.230 20 C -0.242 4.242 21 C -0.121 4.121 22 O -0.066 6.066 23 H 0.116 0.884 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.193 0.807 27 H 0.240 0.760 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.793 -5.747 -0.764 16.823 hybrid contribution 1.028 0.715 0.436 1.326 sum -14.765 -5.031 -0.328 15.602 Atomic orbital electron populations 1.21038 0.85249 1.05419 1.04603 1.19825 0.97644 0.87942 0.92621 1.22431 0.92363 1.00604 1.06837 1.17924 0.90068 0.84037 0.77521 1.90790 1.71629 1.31980 1.52460 1.46203 1.08460 1.08021 1.72380 1.18269 0.75956 0.95874 0.92986 0.98846 1.21863 1.02669 0.96747 0.97601 1.21563 0.92721 1.02800 1.41450 0.90797 1.25856 0.96845 1.00625 0.95457 1.70073 1.02640 1.36150 1.46932 0.85293 0.77759 0.78874 0.78091 1.20343 1.20886 1.18203 1.19987 0.96455 0.96759 0.90513 1.22268 1.05655 0.94447 1.00602 1.21904 1.03002 1.02352 0.96971 1.24628 1.02079 0.86151 0.99227 1.84136 1.49056 1.31730 1.41711 0.88430 0.89769 0.87752 0.80725 0.75997 0.94147 0.91570 0.97384 0.92563 0.81936 0.81451 0.76426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.02 71.24 0.71 -0.93 16 2 C 0.02 0.61 5.78 -19.64 -0.11 0.50 16 3 C -0.20 -6.07 9.49 22.48 0.21 -5.85 16 4 C 0.51 21.90 7.49 85.06 0.64 22.54 16 5 O -0.58 -30.01 12.49 17.71 0.22 -29.79 16 6 N -0.70 -30.69 5.06 -455.12 -2.30 -32.99 16 7 C 0.27 14.80 2.56 44.25 0.11 14.91 16 8 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 9 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 10 C -0.55 -29.79 8.73 25.60 0.22 -29.56 16 11 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 12 C 0.01 0.66 5.30 84.65 0.45 1.10 16 13 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 14 Si 0.98 42.64 29.54 68.60 2.03 44.67 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 C 0.01 0.44 4.36 23.03 0.10 0.54 16 19 C -0.21 -6.48 10.90 22.71 0.25 -6.23 16 20 C -0.22 -6.62 10.87 22.06 0.24 -6.38 16 21 C -0.05 -1.68 12.06 67.11 0.81 -0.87 16 22 O -0.17 -6.57 8.93 16.11 0.14 -6.43 16 23 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 25 H 0.10 1.09 8.08 -2.39 -0.02 1.07 16 26 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 27 H 0.40 14.67 8.50 -92.70 -0.79 13.88 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 32 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.22 5.33 8.06 -2.91 -0.02 5.31 16 Total: -1.00 -75.08 296.49 4.95 -70.13 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.32 Total: 24.78 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.30 Total: -16.49 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.06 Total: -86.88 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: 0.37 Total: -36.21 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -75.08 4.95 -70.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824687846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.090 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds