Wall clock time and date at job start Mon Mar 30 2020 18:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47313 * 2 1 4 4 C 1.50700 * 109.47206 * 240.00054 * 2 1 3 5 5 O 1.20832 * 119.99837 * 359.97438 * 4 2 1 6 6 O 1.34228 * 120.00527 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47428 * 120.00271 * 2 1 3 8 8 H 1.08996 * 109.47409 * 59.99836 * 7 2 1 9 9 N 1.46507 * 109.47624 * 180.02562 * 7 2 1 10 10 C 1.36935 * 119.99742 * 275.00187 * 9 7 2 11 11 H 1.07999 * 120.00083 * 359.97438 * 10 9 7 12 12 C 1.38817 * 119.99986 * 179.97438 * 10 9 7 13 13 N 1.31617 * 119.99464 * 0.27719 * 12 10 9 14 14 Si 1.86800 * 119.99902 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00419 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 300.00175 * 14 12 10 18 18 C 1.50705 * 109.47190 * 299.99821 * 7 2 1 19 19 C 1.38240 * 119.99851 * 279.73014 * 18 7 2 20 20 C 1.38237 * 119.99461 * 179.80819 * 19 18 7 21 21 C 1.38234 * 120.00137 * 0.39580 * 20 19 18 22 22 C 1.38233 * 120.00140 * 359.85694 * 21 20 19 23 23 C 1.38231 * 119.99633 * 99.99683 * 18 7 2 24 24 H 1.08999 * 109.47210 * 299.99271 * 1 2 3 25 25 H 1.08996 * 109.47639 * 59.99951 * 1 2 3 26 26 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 27 27 H 0.96696 * 117.00339 * 180.02562 * 6 4 2 28 28 H 0.96999 * 120.00180 * 94.99114 * 9 7 2 29 29 H 0.97001 * 120.00638 * 359.71685 * 13 12 10 30 30 H 1.07999 * 120.00027 * 359.97438 * 19 18 7 31 31 H 1.07997 * 119.99372 * 180.22769 * 20 19 18 32 32 H 1.07997 * 120.00087 * 179.83480 * 21 20 19 33 33 H 1.07997 * 120.00092 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.00473 * 359.97438 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.2471 -1.1700 -2.0256 6 8 3.3519 -0.8326 -1.4432 7 6 2.0400 -0.7213 1.2491 8 1 1.6767 -1.7489 1.2492 9 7 3.5051 -0.7208 1.2495 10 6 4.1902 -1.6918 0.5692 11 1 3.6505 -2.4583 0.0328 12 6 5.5783 -1.6911 0.5691 13 7 6.2359 -0.7602 1.2274 14 14 6.5129 -3.0162 -0.3583 15 1 6.1541 -2.9593 -1.7982 16 1 7.9729 -2.7926 -0.2034 17 1 6.1549 -4.3495 0.1888 18 6 1.5377 -0.0109 2.4797 19 6 2.1754 1.1311 2.9272 20 6 1.7122 1.7848 4.0537 21 6 0.6164 1.2921 4.7373 22 6 -0.0180 0.1473 4.2928 23 6 0.4427 -0.5044 3.1640 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.6261 -1.2959 -2.2465 28 1 3.9897 -0.0325 1.7315 29 1 5.7506 -0.0722 1.7092 30 1 3.0338 1.5139 2.3953 31 1 2.2082 2.6790 4.4012 32 1 0.2562 1.8014 5.6189 33 1 -0.8739 -0.2379 4.8271 34 1 -0.0531 -1.3987 2.8166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826045798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:05 Heat of formation + Delta-G solvation = -50.976565 kcal Electronic energy + Delta-G solvation = -18614.841287 eV Core-core repulsion = 15706.087673 eV Total energy + Delta-G solvation = -2908.753613 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89025 -38.89054 -35.80297 -35.27314 -33.11919 -30.81262 -30.57646 -29.52122 -25.44288 -24.13503 -23.17636 -22.14023 -20.82344 -19.34603 -17.65239 -17.30594 -16.63757 -15.86673 -15.12705 -14.97220 -14.76475 -14.18914 -13.79754 -13.45059 -13.11686 -12.97710 -12.77301 -12.20397 -12.02355 -11.82368 -11.53029 -11.05789 -10.89978 -10.77011 -10.71726 -10.53646 -10.23763 -9.97454 -9.70928 -9.20233 -8.88846 -8.67129 -8.42199 -7.10944 -6.07690 -3.03562 1.60003 1.64320 3.00051 3.48531 3.52746 3.70097 3.93356 4.04758 4.64792 5.06688 5.08757 5.18993 5.23556 5.36004 5.47510 5.62071 5.70216 5.71727 5.79432 5.94565 6.03403 6.19854 6.20220 6.25934 6.36219 6.38409 6.52386 6.69332 6.73942 6.98755 7.24506 7.37743 7.75116 8.74229 8.81401 9.16365 10.02764 10.14986 11.39977 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.008570 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.742916 B = 3266.520048 C = 4200.263046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 H 0.096 0.904 4 C 0.486 3.514 5 O -0.555 6.555 6 O -0.446 6.446 7 C 0.227 3.773 8 H 0.062 0.938 9 N -0.723 5.723 10 C -0.289 4.289 11 H 0.062 0.938 12 C -0.043 4.043 13 N -0.943 5.943 14 Si 1.076 2.924 15 H -0.297 1.297 16 H -0.286 1.286 17 H -0.298 1.298 18 C -0.067 4.067 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.114 4.114 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.378 0.622 28 H 0.371 0.629 29 H 0.254 0.746 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 3.695 2.940 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 H 0.114 0.886 4 C 0.331 3.669 5 O -0.449 6.449 6 O -0.253 6.253 7 C 0.116 3.884 8 H 0.080 0.920 9 N -0.365 5.365 10 C -0.420 4.420 11 H 0.080 0.920 12 C -0.240 4.240 13 N -0.590 5.590 14 Si 0.907 3.093 15 H -0.224 1.224 16 H -0.212 1.212 17 H -0.226 1.226 18 C -0.068 4.068 19 C -0.125 4.125 20 C -0.138 4.138 21 C -0.150 4.150 22 C -0.141 4.141 23 C -0.133 4.133 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.235 0.765 28 H 0.206 0.794 29 H 0.065 0.935 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.662 3.019 2.586 10.448 hybrid contribution -1.232 0.495 -0.073 1.330 sum -10.894 3.514 2.512 11.719 Atomic orbital electron populations 1.21642 0.93072 1.02533 1.01668 1.21669 0.96016 1.00922 0.94453 0.88584 1.23389 0.81207 0.76027 0.86323 1.90599 1.58074 1.48424 1.47782 1.85560 1.23651 1.71220 1.44829 1.19011 0.86134 0.95920 0.87349 0.91988 1.42564 0.98677 1.33688 1.61550 1.19783 0.91467 1.05262 1.25448 0.91999 1.25567 0.93133 1.03254 1.02050 1.70875 1.37219 1.15890 1.34982 0.83293 0.76438 0.74442 0.75080 1.22436 1.21190 1.22561 1.20192 0.94747 0.95043 0.96856 1.21041 0.99493 0.95310 0.96658 1.21108 0.96886 0.99984 0.95832 1.21046 0.96860 0.97050 1.00017 1.21048 1.00094 0.96109 0.96877 1.21022 0.96670 0.99939 0.95624 0.91688 0.92621 0.92212 0.76470 0.79368 0.93506 0.85898 0.86403 0.86663 0.86507 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.08 37.15 0.30 -1.70 16 2 C -0.11 -1.93 2.60 -91.78 -0.24 -2.17 16 3 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 4 C 0.49 9.81 7.24 36.01 0.26 10.07 16 5 O -0.56 -11.95 16.74 -18.76 -0.31 -12.26 16 6 O -0.45 -9.31 8.92 -39.25 -0.35 -9.66 16 7 C 0.23 4.36 2.22 -69.08 -0.15 4.20 16 8 H 0.06 1.26 7.94 -51.93 -0.41 0.85 16 9 N -0.72 -16.77 4.85 -54.55 -0.26 -17.04 16 10 C -0.29 -7.47 6.37 -15.06 -0.10 -7.57 16 11 H 0.06 1.61 7.02 -52.49 -0.37 1.24 16 12 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 13 N -0.94 -27.95 13.70 55.49 0.76 -27.19 16 14 Si 1.08 25.05 29.92 -169.99 -5.09 19.97 16 15 H -0.30 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.30 -6.77 7.11 56.52 0.40 -6.36 16 18 C -0.07 -1.13 4.05 -104.62 -0.42 -1.55 16 19 C -0.11 -1.72 9.06 -39.58 -0.36 -2.08 16 20 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 21 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 22 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.11 -1.66 8.71 -39.58 -0.34 -2.01 16 24 H 0.06 0.89 6.64 -51.93 -0.34 0.54 16 25 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 26 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 27 H 0.38 6.59 9.10 45.56 0.41 7.00 16 28 H 0.37 8.91 4.88 -40.82 -0.20 8.72 16 29 H 0.25 7.41 6.77 -40.82 -0.28 7.13 16 30 H 0.12 2.07 6.90 -52.49 -0.36 1.71 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 285.22 15.07 4.30 4.30 Total: -1.00 -31.36 285.22 -6.60 -37.96 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -3.30 Total: 14.08 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.34 Total: -10.16 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.50 Total: -44.22 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.66 Total: -21.92 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.97 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.36 -6.60 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826045798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.019 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds