Wall clock time and date at job start Mon Mar 30 2020 18:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47313 * 2 1 4 4 C 1.50700 * 109.47206 * 240.00054 * 2 1 3 5 5 O 1.20832 * 119.99837 * 359.97438 * 4 2 1 6 6 O 1.34228 * 120.00527 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47428 * 120.00271 * 2 1 3 8 8 H 1.08996 * 109.47409 * 59.99836 * 7 2 1 9 9 N 1.46507 * 109.47624 * 180.02562 * 7 2 1 10 10 C 1.36935 * 119.99742 * 275.00187 * 9 7 2 11 11 H 1.07999 * 120.00083 * 359.97438 * 10 9 7 12 12 C 1.38817 * 119.99986 * 179.97438 * 10 9 7 13 13 N 1.31617 * 119.99464 * 0.27719 * 12 10 9 14 14 Si 1.86800 * 119.99902 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00419 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 300.00175 * 14 12 10 18 18 C 1.50705 * 109.47190 * 299.99821 * 7 2 1 19 19 C 1.38240 * 119.99851 * 279.73014 * 18 7 2 20 20 C 1.38237 * 119.99461 * 179.80819 * 19 18 7 21 21 C 1.38234 * 120.00137 * 0.39580 * 20 19 18 22 22 C 1.38233 * 120.00140 * 359.85694 * 21 20 19 23 23 C 1.38231 * 119.99633 * 99.99683 * 18 7 2 24 24 H 1.08999 * 109.47210 * 299.99271 * 1 2 3 25 25 H 1.08996 * 109.47639 * 59.99951 * 1 2 3 26 26 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 27 27 H 0.96696 * 117.00339 * 180.02562 * 6 4 2 28 28 H 0.96999 * 120.00180 * 94.99114 * 9 7 2 29 29 H 0.97001 * 120.00638 * 359.71685 * 13 12 10 30 30 H 1.07999 * 120.00027 * 359.97438 * 19 18 7 31 31 H 1.07997 * 119.99372 * 180.22769 * 20 19 18 32 32 H 1.07997 * 120.00087 * 179.83480 * 21 20 19 33 33 H 1.07997 * 120.00092 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.00473 * 359.97438 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.2471 -1.1700 -2.0256 6 8 3.3519 -0.8326 -1.4432 7 6 2.0400 -0.7213 1.2491 8 1 1.6767 -1.7489 1.2492 9 7 3.5051 -0.7208 1.2495 10 6 4.1902 -1.6918 0.5692 11 1 3.6505 -2.4583 0.0328 12 6 5.5783 -1.6911 0.5691 13 7 6.2359 -0.7602 1.2274 14 14 6.5129 -3.0162 -0.3583 15 1 6.1541 -2.9593 -1.7982 16 1 7.9729 -2.7926 -0.2034 17 1 6.1549 -4.3495 0.1888 18 6 1.5377 -0.0109 2.4797 19 6 2.1754 1.1311 2.9272 20 6 1.7122 1.7848 4.0537 21 6 0.6164 1.2921 4.7373 22 6 -0.0180 0.1473 4.2928 23 6 0.4427 -0.5044 3.1640 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.6261 -1.2959 -2.2465 28 1 3.9897 -0.0325 1.7315 29 1 5.7506 -0.0722 1.7092 30 1 3.0338 1.5139 2.3953 31 1 2.2082 2.6790 4.4012 32 1 0.2562 1.8014 5.6189 33 1 -0.8739 -0.2379 4.8271 34 1 -0.0531 -1.3987 2.8166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826045798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:05 Heat of formation + Delta-G solvation = -70.845538 kcal Electronic energy + Delta-G solvation = -18615.702870 eV Core-core repulsion = 15706.087673 eV Total energy + Delta-G solvation = -2909.615197 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.42981 -40.19106 -37.36915 -36.94081 -34.90730 -32.21117 -31.72027 -31.08708 -27.01417 -25.68290 -24.86609 -23.34889 -22.14697 -20.84495 -19.49057 -18.96723 -18.04285 -17.32706 -16.69635 -16.41040 -16.17656 -15.63359 -15.49118 -15.03538 -14.41177 -14.25277 -14.18442 -13.55941 -13.36306 -13.25232 -12.89190 -12.75891 -12.43611 -12.23431 -12.07823 -12.03000 -11.86240 -11.75885 -11.35692 -11.11522 -10.79289 -9.76564 -9.59536 -9.06241 -8.20553 -5.11355 0.47219 0.54701 1.36598 1.61239 1.69682 1.85400 2.42109 2.77378 2.93288 3.53813 3.66072 3.79668 4.01521 4.13109 4.18800 4.26376 4.27738 4.37620 4.57480 4.68314 4.74017 4.84993 4.89849 5.00085 5.14252 5.17931 5.23013 5.61741 5.64529 5.65973 5.77174 5.82119 6.16329 6.64033 7.17909 7.22968 8.06216 8.17487 9.31090 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.008570 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.742916 B = 3266.520048 C = 4200.263046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.101 4.101 3 H 0.097 0.903 4 C 0.484 3.516 5 O -0.568 6.568 6 O -0.464 6.464 7 C 0.230 3.770 8 H 0.049 0.951 9 N -0.735 5.735 10 C -0.266 4.266 11 H 0.059 0.941 12 C -0.102 4.102 13 N -0.984 5.984 14 Si 1.115 2.885 15 H -0.273 1.273 16 H -0.301 1.301 17 H -0.289 1.289 18 C -0.087 4.087 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.120 4.120 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.394 0.606 28 H 0.365 0.635 29 H 0.242 0.758 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 3.775 3.831 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.123 4.123 3 H 0.115 0.885 4 C 0.329 3.671 5 O -0.463 6.463 6 O -0.272 6.272 7 C 0.120 3.880 8 H 0.067 0.933 9 N -0.376 5.376 10 C -0.398 4.398 11 H 0.077 0.923 12 C -0.293 4.293 13 N -0.634 5.634 14 Si 0.942 3.058 15 H -0.199 1.199 16 H -0.228 1.228 17 H -0.216 1.216 18 C -0.088 4.088 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.136 4.136 23 C -0.139 4.139 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.252 0.748 28 H 0.199 0.801 29 H 0.052 0.948 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.899 3.094 3.460 12.772 hybrid contribution -0.705 0.502 -0.317 0.922 sum -12.604 3.596 3.143 13.479 Atomic orbital electron populations 1.21593 0.90626 1.02803 1.02859 1.21720 0.97925 1.00346 0.92296 0.88513 1.23784 0.80699 0.75813 0.86775 1.90586 1.58158 1.49111 1.48414 1.85445 1.24308 1.71476 1.45996 1.19058 0.83840 0.95789 0.89279 0.93304 1.42712 1.00519 1.33059 1.61282 1.19924 0.91438 1.04689 1.23716 0.92282 1.26656 0.94621 1.04678 1.03323 1.70976 1.37427 1.17334 1.37638 0.82771 0.74503 0.72881 0.75613 1.19886 1.22813 1.21606 1.19975 0.96443 0.95816 0.96586 1.21008 0.99488 0.95973 0.97993 1.21368 0.97405 1.00450 0.94964 1.21476 0.95642 0.96688 1.00386 1.21439 1.00585 0.95627 0.95912 1.21202 0.96076 1.00446 0.96148 0.89770 0.92087 0.92364 0.74818 0.80100 0.94785 0.87856 0.84533 0.83297 0.83218 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.08 71.98 0.58 -2.90 16 2 C -0.10 -3.55 2.60 -11.54 -0.03 -3.58 16 3 H 0.10 3.41 8.14 -2.39 -0.02 3.40 16 4 C 0.48 19.36 7.24 71.24 0.52 19.88 16 5 O -0.57 -23.98 16.74 21.95 0.37 -23.62 16 6 O -0.46 -19.38 8.92 -51.40 -0.46 -19.84 16 7 C 0.23 8.82 2.22 44.24 0.10 8.92 16 8 H 0.05 1.98 7.94 -2.39 -0.02 1.97 16 9 N -0.73 -34.76 4.85 -326.49 -1.58 -36.34 16 10 C -0.27 -13.93 6.37 84.04 0.54 -13.39 16 11 H 0.06 3.08 7.02 -2.91 -0.02 3.06 16 12 C -0.10 -5.70 5.50 84.86 0.47 -5.23 16 13 N -0.98 -60.02 13.70 21.65 0.30 -59.72 16 14 Si 1.11 50.99 29.92 68.60 2.05 53.04 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 17 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 18 C -0.09 -2.85 4.05 -19.86 -0.08 -2.93 16 19 C -0.13 -4.02 9.06 22.27 0.20 -3.82 16 20 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 21 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 22 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 23 C -0.12 -3.22 8.71 22.27 0.19 -3.03 16 24 H 0.08 2.10 6.64 -2.39 -0.02 2.08 16 25 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 26 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 27 H 0.39 13.57 9.10 -74.06 -0.67 12.90 16 28 H 0.36 18.22 4.88 -92.71 -0.45 17.76 16 29 H 0.24 14.72 6.77 -92.71 -0.63 14.09 16 30 H 0.10 3.63 6.90 -2.91 -0.02 3.61 16 31 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.13 3.13 8.04 -2.91 -0.02 3.10 16 Total: -1.00 -67.85 285.22 3.97 -63.88 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 0.14 Total: 36.41 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 3.15 Total: -13.79 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -1.29 Total: -96.07 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.09 Total: -43.46 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -67.85 3.97 -63.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826045798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.968 kcal (2) G-P(sol) polarization free energy of solvation -67.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds