Wall clock time and date at job start Mon Mar 30 2020 18:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35627 * 119.99691 * 2 1 4 4 C 1.41548 * 120.00471 * 7.24532 * 3 2 1 5 5 O 1.21780 * 119.99478 * 6.05128 * 4 3 2 6 6 N 1.34774 * 120.00284 * 186.05277 * 4 3 2 7 7 C 1.46498 * 120.00011 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47179 * 180.02562 * 7 6 4 9 9 C 1.50706 * 109.47235 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00003 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99901 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99802 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47028 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46950 * 120.00109 * 13 11 9 16 16 H 1.48503 * 109.47061 * 239.99932 * 13 11 9 17 17 C 1.41600 * 120.00220 * 180.02562 * 2 1 3 18 18 C 1.37956 * 126.10234 * 294.98324 * 17 2 1 19 19 C 1.40314 * 106.52683 * 180.02562 * 18 17 2 20 20 C 1.35155 * 107.20935 * 359.97438 * 19 18 17 21 21 O 1.34023 * 109.03200 * 0.02562 * 20 19 18 22 22 H 1.08995 * 109.46736 * 275.52525 * 1 2 3 23 23 H 1.08997 * 109.47175 * 35.52572 * 1 2 3 24 24 H 1.09005 * 109.47034 * 155.52695 * 1 2 3 25 25 H 1.08007 * 119.99497 * 187.24557 * 3 2 1 26 26 H 0.97001 * 119.99983 * 0.02562 * 6 4 3 27 27 H 1.09005 * 109.47153 * 300.00459 * 7 6 4 28 28 H 1.09001 * 109.46968 * 60.00476 * 7 6 4 29 29 H 1.09005 * 109.47007 * 300.00002 * 8 7 6 30 30 H 1.08992 * 109.47688 * 59.99727 * 8 7 6 31 31 H 0.96999 * 119.99973 * 180.02562 * 12 11 9 32 32 H 1.07993 * 126.73563 * 0.02562 * 18 17 2 33 33 H 1.08002 * 126.39672 * 180.02562 * 19 18 17 34 34 H 1.07998 * 125.47952 * 180.26237 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4859 2.3956 0.1546 5 8 0.2926 2.3872 0.3975 6 7 2.1407 3.5673 0.0329 7 6 1.4168 4.8309 0.1924 8 6 2.3854 6.0005 0.0062 9 6 1.6409 7.3004 0.1709 10 1 0.5827 7.2931 0.3863 11 6 2.3108 8.4991 0.0465 12 7 3.5996 8.5080 -0.2153 13 14 1.3878 10.1103 0.2499 14 1 -0.0415 9.8290 0.5382 15 1 1.9771 10.8798 1.3750 16 1 1.4942 10.9031 -1.0013 17 6 2.2151 -1.2263 -0.0005 18 6 2.2138 -2.1661 1.0094 19 6 3.0473 -3.2112 0.5830 20 6 3.5132 -2.8773 -0.6410 21 8 3.0116 -1.6841 -0.9889 22 1 -0.3632 0.0989 1.0229 23 1 -0.3633 0.8363 -0.5971 24 1 -0.3633 -0.9354 -0.4257 25 1 3.2587 1.1783 -0.1180 26 1 3.0911 3.5739 -0.1610 27 1 0.6251 4.8928 -0.5543 28 1 0.9798 4.8759 1.1899 29 1 3.1774 5.9387 0.7527 30 1 2.8222 5.9554 -0.9913 31 1 4.0709 9.3513 -0.3025 32 1 1.6768 -2.1086 1.9445 33 1 3.2737 -4.1143 1.1303 34 1 4.1791 -3.4773 -1.2434 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832022565.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:20 Heat of formation + Delta-G solvation = -13.912945 kcal Electronic energy + Delta-G solvation = -16902.360100 eV Core-core repulsion = 13995.213685 eV Total energy + Delta-G solvation = -2907.146414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.71146 -39.65546 -35.66399 -34.50778 -33.13907 -32.86323 -30.16387 -28.95466 -27.73481 -24.86281 -23.26622 -21.87397 -21.08042 -20.49705 -19.24819 -17.27410 -16.88477 -16.33027 -16.07626 -15.41100 -14.98017 -14.51014 -14.45827 -13.71729 -13.38870 -13.17110 -13.08944 -12.87714 -12.50899 -12.42167 -12.26643 -11.75365 -11.18794 -11.04551 -10.61954 -10.32540 -10.18971 -9.71912 -9.53637 -9.42566 -9.14838 -8.58120 -8.45421 -8.25597 -6.09234 -4.12002 0.77665 1.53486 2.35432 2.87617 3.28548 3.36073 3.41078 3.58863 3.86002 4.42301 4.58758 4.73022 4.87744 4.90151 5.27926 5.32954 5.42767 5.55724 5.61075 5.79386 5.80598 5.96538 6.14516 6.24757 6.35831 6.36401 6.49417 6.75033 6.83515 6.93841 7.52664 7.62303 7.89184 8.02361 8.27969 8.63797 8.94367 9.52909 11.02463 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.055199 B = 0.003327 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.129563 B = 8412.778837 C = 8762.283587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.021 3.979 3 C -0.183 4.183 4 C 0.534 3.466 5 O -0.547 6.547 6 N -0.716 5.716 7 C 0.121 3.879 8 C 0.011 3.989 9 C -0.521 4.521 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.010 3.990 18 C -0.182 4.182 19 C -0.213 4.213 20 C -0.040 4.040 21 O -0.163 6.163 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.054 0.946 25 H 0.128 0.872 26 H 0.398 0.602 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 -22.015 0.001 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.019 3.981 3 C -0.203 4.203 4 C 0.324 3.676 5 O -0.429 6.429 6 N -0.366 5.366 7 C -0.001 4.001 8 C -0.026 4.026 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.040 4.040 18 C -0.201 4.201 19 C -0.232 4.232 20 C -0.109 4.109 21 O -0.058 6.058 22 H 0.102 0.898 23 H 0.119 0.881 24 H 0.073 0.927 25 H 0.146 0.854 26 H 0.232 0.768 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.371 -21.688 -0.125 21.692 hybrid contribution 0.399 0.742 0.147 0.855 sum 0.028 -20.946 0.023 20.946 Atomic orbital electron populations 1.21113 0.88488 1.02733 1.04128 1.19190 0.96060 0.88218 0.94666 1.22222 1.00913 0.92660 1.04549 1.16951 0.87344 0.84485 0.78815 1.90785 1.14959 1.88054 1.49076 1.46302 1.13058 1.06670 1.70522 1.21722 0.96134 0.81644 1.00594 1.19336 0.94434 0.91116 0.97738 1.21096 0.95591 0.90393 1.48865 0.92176 1.25005 0.94906 0.99432 0.95010 1.69966 1.08006 1.26544 1.48801 0.86457 0.80098 0.83292 0.77725 1.19569 1.20941 1.20935 1.19851 0.97983 0.96848 0.89309 1.22165 1.03659 0.93778 1.00527 1.21727 1.02696 1.01620 0.97135 1.24213 1.02406 0.86268 0.97999 1.84197 1.49370 1.31302 1.40907 0.89751 0.88141 0.92702 0.85388 0.76800 0.92469 0.92448 0.95937 0.95934 0.92901 0.82957 0.83160 0.77964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 8.43 36.01 0.30 -1.07 16 2 C 0.02 0.28 5.77 -104.27 -0.60 -0.32 16 3 C -0.18 -2.54 9.46 -39.25 -0.37 -2.91 16 4 C 0.53 9.15 7.43 -15.00 -0.11 9.04 16 5 O -0.55 -10.70 13.16 5.12 0.07 -10.63 16 6 N -0.72 -12.70 5.55 -63.24 -0.35 -13.05 16 7 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 8 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 9 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 10 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 13 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.01 0.12 6.34 -38.40 -0.24 -0.12 16 18 C -0.18 -1.91 10.90 -38.90 -0.42 -2.33 16 19 C -0.21 -1.86 10.87 -39.90 -0.43 -2.29 16 20 C -0.04 -0.34 12.06 29.64 0.36 0.01 16 21 O -0.16 -1.90 10.67 4.67 0.05 -1.85 16 22 H 0.08 1.07 8.03 -51.93 -0.42 0.65 16 23 H 0.10 1.47 6.16 -51.93 -0.32 1.15 16 24 H 0.05 0.59 8.06 -51.93 -0.42 0.17 16 25 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 26 H 0.40 6.17 8.43 -40.82 -0.34 5.83 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.20 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -31.75 301.59 -6.50 -38.24 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.42 Total: 2.42 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.10 Total: -10.57 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.39 Total: -38.55 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.12 Total: -12.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.75 -6.50 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022565.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.331 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds