Wall clock time and date at job start Mon Mar 30 2020 18:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35627 * 119.99691 * 2 1 4 4 C 1.41548 * 120.00471 * 7.24532 * 3 2 1 5 5 O 1.21780 * 119.99478 * 6.05128 * 4 3 2 6 6 N 1.34774 * 120.00284 * 186.05277 * 4 3 2 7 7 C 1.46498 * 120.00011 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47179 * 180.02562 * 7 6 4 9 9 C 1.50706 * 109.47235 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00003 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99901 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99802 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47028 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46950 * 120.00109 * 13 11 9 16 16 H 1.48503 * 109.47061 * 239.99932 * 13 11 9 17 17 C 1.41600 * 120.00220 * 180.02562 * 2 1 3 18 18 C 1.37956 * 126.10234 * 294.98324 * 17 2 1 19 19 C 1.40314 * 106.52683 * 180.02562 * 18 17 2 20 20 C 1.35155 * 107.20935 * 359.97438 * 19 18 17 21 21 O 1.34023 * 109.03200 * 0.02562 * 20 19 18 22 22 H 1.08995 * 109.46736 * 275.52525 * 1 2 3 23 23 H 1.08997 * 109.47175 * 35.52572 * 1 2 3 24 24 H 1.09005 * 109.47034 * 155.52695 * 1 2 3 25 25 H 1.08007 * 119.99497 * 187.24557 * 3 2 1 26 26 H 0.97001 * 119.99983 * 0.02562 * 6 4 3 27 27 H 1.09005 * 109.47153 * 300.00459 * 7 6 4 28 28 H 1.09001 * 109.46968 * 60.00476 * 7 6 4 29 29 H 1.09005 * 109.47007 * 300.00002 * 8 7 6 30 30 H 1.08992 * 109.47688 * 59.99727 * 8 7 6 31 31 H 0.96999 * 119.99973 * 180.02562 * 12 11 9 32 32 H 1.07993 * 126.73563 * 0.02562 * 18 17 2 33 33 H 1.08002 * 126.39672 * 180.02562 * 19 18 17 34 34 H 1.07998 * 125.47952 * 180.26237 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4859 2.3956 0.1546 5 8 0.2926 2.3872 0.3975 6 7 2.1407 3.5673 0.0329 7 6 1.4168 4.8309 0.1924 8 6 2.3854 6.0005 0.0062 9 6 1.6409 7.3004 0.1709 10 1 0.5827 7.2931 0.3863 11 6 2.3108 8.4991 0.0465 12 7 3.5996 8.5080 -0.2153 13 14 1.3878 10.1103 0.2499 14 1 -0.0415 9.8290 0.5382 15 1 1.9771 10.8798 1.3750 16 1 1.4942 10.9031 -1.0013 17 6 2.2151 -1.2263 -0.0005 18 6 2.2138 -2.1661 1.0094 19 6 3.0473 -3.2112 0.5830 20 6 3.5132 -2.8773 -0.6410 21 8 3.0116 -1.6841 -0.9889 22 1 -0.3632 0.0989 1.0229 23 1 -0.3633 0.8363 -0.5971 24 1 -0.3633 -0.9354 -0.4257 25 1 3.2587 1.1783 -0.1180 26 1 3.0911 3.5739 -0.1610 27 1 0.6251 4.8928 -0.5543 28 1 0.9798 4.8759 1.1899 29 1 3.1774 5.9387 0.7527 30 1 2.8222 5.9554 -0.9913 31 1 4.0709 9.3513 -0.3025 32 1 1.6768 -2.1086 1.9445 33 1 3.2737 -4.1143 1.1303 34 1 4.1791 -3.4773 -1.2434 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832022565.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:20 Heat of formation + Delta-G solvation = -34.173792 kcal Electronic energy + Delta-G solvation = -16903.238676 eV Core-core repulsion = 13995.213685 eV Total energy + Delta-G solvation = -2908.024990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.48046 -41.02913 -37.05207 -35.92089 -34.82345 -33.89308 -31.90072 -29.92097 -28.96966 -26.65664 -24.44568 -22.82810 -22.60027 -21.73821 -20.30922 -18.64968 -18.11940 -17.88074 -17.05960 -16.62526 -16.51507 -16.29068 -15.74495 -15.04007 -14.83532 -14.40919 -14.18405 -13.87017 -13.77595 -13.50406 -13.37015 -13.20645 -12.94980 -12.77537 -12.50891 -12.22737 -11.64051 -11.42628 -10.94014 -10.70694 -10.62267 -10.57839 -9.91382 -9.25395 -8.24536 -6.35104 -0.26377 0.70688 1.41074 1.41874 1.55266 1.65070 2.02604 2.30436 2.38390 2.55860 3.10257 3.75546 3.85186 4.05595 4.17791 4.22752 4.41362 4.50572 4.52460 4.72389 4.80796 4.86277 4.93108 4.96817 5.08571 5.17997 5.28157 5.44495 5.51499 5.57207 5.57979 5.79023 6.08712 6.15873 6.63234 6.78669 7.25571 7.34393 8.87675 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.055199 B = 0.003327 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.129563 B = 8412.778837 C = 8762.283587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.045 3.955 3 C -0.202 4.202 4 C 0.537 3.463 5 O -0.576 6.576 6 N -0.716 5.716 7 C 0.142 3.858 8 C 0.021 3.979 9 C -0.546 4.546 10 H 0.060 0.940 11 C 0.005 3.995 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.029 4.029 18 C -0.177 4.177 19 C -0.222 4.222 20 C -0.030 4.030 21 O -0.180 6.180 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.147 0.853 26 H 0.409 0.591 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.008 0.992 30 H 0.007 0.993 31 H 0.266 0.734 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 -23.585 0.124 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.042 3.958 3 C -0.223 4.223 4 C 0.329 3.671 5 O -0.459 6.459 6 N -0.366 5.366 7 C 0.018 3.982 8 C -0.016 4.016 9 C -0.584 4.584 10 H 0.078 0.922 11 C -0.193 4.193 12 N -0.567 5.567 13 Si 0.791 3.209 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.078 4.078 18 C -0.196 4.196 19 C -0.241 4.241 20 C -0.098 4.098 21 O -0.076 6.076 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.165 0.835 26 H 0.245 0.755 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.180 0.820 33 H 0.195 0.805 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.171 -23.279 -0.002 23.279 hybrid contribution 0.368 1.041 0.106 1.109 sum 0.197 -22.237 0.104 22.238 Atomic orbital electron populations 1.21075 0.88636 1.02866 1.03790 1.19305 0.96153 0.88658 0.91692 1.22080 1.01682 0.91305 1.07231 1.17367 0.87028 0.84997 0.77703 1.90774 1.16286 1.88438 1.50450 1.46114 1.13540 1.05771 1.71171 1.21216 0.95099 0.82178 0.99717 1.19147 0.94399 0.91875 0.96201 1.21509 0.95931 0.91902 1.49079 0.92201 1.25897 0.95781 1.03148 0.94486 1.70069 1.09473 1.27720 1.49465 0.85375 0.78946 0.78658 0.77935 1.18874 1.20214 1.20216 1.19717 1.00107 0.97298 0.90674 1.22489 1.03155 0.93569 1.00354 1.22104 1.02332 1.02155 0.97477 1.25104 1.01276 0.85079 0.98291 1.84183 1.49624 1.32653 1.41132 0.89779 0.90254 0.90660 0.83528 0.75509 0.93359 0.93331 0.97411 0.97431 0.92544 0.81965 0.80498 0.74135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 8.43 71.24 0.60 -2.10 16 2 C 0.04 1.14 5.77 -19.64 -0.11 1.02 16 3 C -0.20 -5.57 9.46 22.48 0.21 -5.36 16 4 C 0.54 18.62 7.43 85.06 0.63 19.25 16 5 O -0.58 -22.99 13.16 -4.60 -0.06 -23.05 16 6 N -0.72 -25.81 5.55 -472.19 -2.62 -28.43 16 7 C 0.14 6.20 5.61 86.38 0.48 6.68 16 8 C 0.02 1.09 5.09 29.85 0.15 1.24 16 9 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 10 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 11 C 0.01 0.31 5.46 84.65 0.46 0.77 16 12 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 13 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 14 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 C -0.03 -0.65 6.34 23.03 0.15 -0.51 16 18 C -0.18 -3.31 10.90 22.71 0.25 -3.06 16 19 C -0.22 -3.17 10.87 22.06 0.24 -2.93 16 20 C -0.03 -0.41 12.06 67.11 0.81 0.40 16 21 O -0.18 -3.85 10.67 -6.20 -0.07 -3.92 16 22 H 0.08 2.11 8.03 -2.39 -0.02 2.09 16 23 H 0.08 2.37 6.16 -2.39 -0.01 2.35 16 24 H 0.07 1.54 8.06 -2.38 -0.02 1.52 16 25 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 26 H 0.41 12.86 8.43 -92.71 -0.78 12.08 16 27 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.24 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -68.28 301.59 3.99 -64.29 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.32 Total: 14.95 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.11 Total: -15.17 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.33 Total: -83.05 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.13 Total: -26.97 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.28 3.99 -64.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022565.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.113 kcal (2) G-P(sol) polarization free energy of solvation -68.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds