Wall clock time and date at job start Mon Mar 30 2020 18:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47345 * 2 1 4 4 C 1.38621 * 119.55234 * 124.99731 * 3 2 1 5 5 C 1.38578 * 119.35974 * 180.02562 * 4 3 2 6 6 C 1.38638 * 118.48970 * 0.02562 * 5 4 3 7 7 C 1.39308 * 119.05391 * 359.97438 * 6 5 4 8 8 C 1.48068 * 119.72172 * 179.97438 * 7 6 5 9 9 O 1.21438 * 120.00385 * 0.02562 * 8 7 6 10 10 O 1.34679 * 119.99922 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00062 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46708 * 30.00427 * 11 10 8 13 13 C 1.52997 * 109.47147 * 269.99770 * 11 10 8 14 14 C 1.50699 * 109.47021 * 149.99870 * 11 10 8 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99500 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00390 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46755 * 90.00226 * 18 16 14 20 20 H 1.48498 * 109.46866 * 210.00212 * 18 16 14 21 21 H 1.48496 * 109.47178 * 330.00276 * 18 16 14 22 22 N 1.31481 * 119.53944 * 305.27846 * 3 2 1 23 23 H 1.09002 * 109.47078 * 60.00393 * 1 2 3 24 24 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47519 * 299.99965 * 1 2 3 26 26 H 1.09001 * 109.47717 * 239.99529 * 2 1 3 27 27 H 1.09002 * 109.47078 * 119.99607 * 2 1 3 28 28 H 1.07997 * 120.31969 * 0.04121 * 4 3 2 29 29 H 1.07998 * 120.75914 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.47398 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 32 32 H 1.09001 * 109.46832 * 60.00119 * 13 11 10 33 33 H 1.09004 * 109.47261 * 300.00100 * 13 11 10 34 34 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9123 1.8349 0.9878 5 6 3.3714 3.1424 0.9843 6 6 2.9295 3.9957 -0.0150 7 6 2.0448 3.5114 -0.9759 8 6 1.5630 4.4101 -2.0496 9 8 1.9396 5.5639 -2.0902 10 8 0.7072 3.9479 -2.9811 11 6 0.2764 4.8848 -4.0034 12 1 1.0656 5.6149 -4.1827 13 6 -0.9886 5.6059 -3.5338 14 6 -0.0156 4.1374 -5.2789 15 1 0.1096 3.0653 -5.3173 16 6 -0.4436 4.8219 -6.3966 17 7 -0.5965 6.1273 -6.3496 18 14 -0.8050 3.8955 -7.9779 19 1 -2.2302 3.4787 -7.9927 20 1 -0.5352 4.7780 -9.1413 21 1 0.0631 2.6933 -8.0567 22 7 1.6256 2.2522 -0.9338 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2372 1.1450 1.7526 29 1 4.0570 3.4891 1.7433 30 1 3.2671 5.0210 -0.0486 31 1 -1.3117 6.3096 -4.3009 32 1 -0.7773 6.1466 -2.6112 33 1 -1.7778 4.8757 -3.3544 34 1 -0.8980 6.6089 -7.1358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835159238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:27 Heat of formation + Delta-G solvation = -82.973161 kcal Electronic energy + Delta-G solvation = -17699.889907 eV Core-core repulsion = 14789.748818 eV Total energy + Delta-G solvation = -2910.141090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82656 -40.65723 -37.69737 -35.38650 -35.16055 -33.61727 -31.73750 -30.94258 -27.51440 -26.52508 -25.39044 -23.55685 -22.29097 -21.64576 -19.37206 -18.65501 -17.80095 -17.25834 -16.98241 -16.75914 -16.48273 -15.68192 -15.31800 -14.86743 -14.63788 -14.33219 -14.14829 -13.88785 -13.35137 -13.20365 -13.05597 -12.87130 -12.82398 -12.44987 -12.37572 -12.18745 -11.95507 -11.74944 -11.63414 -11.05479 -10.95186 -10.63486 -10.48329 -10.09058 -8.31640 -6.48741 -0.51226 0.22890 1.38937 1.41512 1.42946 1.53358 1.82104 2.37473 2.74429 2.98423 3.09208 3.65417 3.86741 3.93128 4.04984 4.36052 4.38203 4.45987 4.49622 4.54713 4.72330 4.75408 4.87254 4.99405 5.04751 5.08240 5.12137 5.24635 5.42862 5.46122 5.55185 5.62435 5.80554 5.98955 6.51157 6.70407 6.97714 7.22444 8.76572 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026278 B = 0.005633 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.288694 B = 4969.678410 C = 5658.323475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C 0.107 3.893 4 C -0.123 4.123 5 C -0.069 4.069 6 C -0.118 4.118 7 C 0.068 3.932 8 C 0.500 3.500 9 O -0.540 6.540 10 O -0.344 6.344 11 C 0.213 3.787 12 H 0.010 0.990 13 C -0.140 4.140 14 C -0.550 4.550 15 H 0.063 0.937 16 C 0.018 3.982 17 N -0.916 5.916 18 Si 0.986 3.014 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.268 1.268 22 N -0.469 5.469 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.192 0.808 29 H 0.192 0.808 30 H 0.149 0.851 31 H 0.086 0.914 32 H 0.023 0.977 33 H 0.043 0.957 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 -11.538 16.751 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.035 4.035 4 C -0.142 4.142 5 C -0.094 4.094 6 C -0.139 4.139 7 C -0.067 4.067 8 C 0.345 3.655 9 O -0.432 6.432 10 O -0.258 6.258 11 C 0.160 3.840 12 H 0.028 0.972 13 C -0.198 4.198 14 C -0.587 4.587 15 H 0.081 0.919 16 C -0.182 4.182 17 N -0.554 5.554 18 Si 0.808 3.192 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.192 1.192 22 N -0.181 5.181 23 H 0.051 0.949 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.141 0.859 28 H 0.210 0.790 29 H 0.209 0.791 30 H 0.167 0.833 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.113 -11.271 15.910 20.433 hybrid contribution 0.165 0.784 -0.644 1.028 sum 6.278 -10.487 15.265 19.555 Atomic orbital electron populations 1.21674 0.94907 1.02522 1.01272 1.20645 0.96435 0.88511 1.05043 1.22110 0.94122 0.96995 0.90230 1.22822 0.95127 0.97412 0.98814 1.22105 0.97897 0.92606 0.96830 1.22298 0.95177 1.02774 0.93630 1.20033 0.99920 0.91360 0.95414 1.21667 0.76273 0.85909 0.81650 1.90729 1.57684 1.19803 1.74945 1.86661 1.56144 1.45828 1.37214 1.20477 0.92625 0.87338 0.83550 0.97207 1.21976 0.98193 1.00216 0.99378 1.21245 1.47838 0.94841 0.94805 0.91919 1.25848 0.93983 0.95982 1.02378 1.70011 1.45849 1.08038 1.31456 0.85143 0.79067 0.78146 0.76802 1.19000 1.19801 1.19219 1.67352 1.23186 1.02560 1.25009 0.94886 0.90189 0.92807 0.90133 0.85891 0.79038 0.79096 0.83317 0.89580 0.95822 0.93797 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.77 71.98 0.70 -2.33 16 2 C -0.07 -1.22 6.33 29.85 0.19 -1.03 16 3 C 0.11 2.59 6.19 42.70 0.26 2.86 16 4 C -0.12 -1.93 9.72 22.44 0.22 -1.71 16 5 C -0.07 -1.18 10.17 22.45 0.23 -0.95 16 6 C -0.12 -3.30 9.63 22.62 0.22 -3.09 16 7 C 0.07 2.58 6.75 41.87 0.28 2.86 16 8 C 0.50 24.54 7.92 70.43 0.56 25.10 16 9 O -0.54 -28.20 15.58 20.04 0.31 -27.89 16 10 O -0.34 -18.99 9.68 -55.88 -0.54 -19.53 16 11 C 0.21 12.68 2.56 29.85 0.08 12.76 16 12 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 13 C -0.14 -7.73 9.33 71.98 0.67 -7.06 16 14 C -0.55 -33.32 8.90 25.60 0.23 -33.09 16 15 H 0.06 3.78 7.81 -2.91 -0.02 3.76 16 16 C 0.02 1.02 5.30 84.65 0.45 1.47 16 17 N -0.92 -54.20 11.32 21.45 0.24 -53.96 16 18 Si 0.99 44.57 29.54 68.60 2.03 46.59 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 N -0.47 -16.80 9.62 -173.11 -1.67 -18.46 16 23 H 0.03 0.94 7.94 -2.39 -0.02 0.92 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.12 1.07 7.87 -2.39 -0.02 1.05 16 28 H 0.19 1.03 7.95 -2.91 -0.02 1.00 16 29 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 30 H 0.15 4.03 7.64 -2.91 -0.02 4.01 16 31 H 0.09 4.98 6.07 -2.39 -0.01 4.97 16 32 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -76.80 299.13 5.55 -71.25 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.09 Total: 6.22 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.09 Total: -4.21 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.42 Total: -72.42 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.23 Total: -47.43 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -76.80 5.55 -71.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.727 kcal (2) G-P(sol) polarization free energy of solvation -76.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds