Wall clock time and date at job start Mon Mar 30 2020 18:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46744 * 2 1 4 4 C 1.38632 * 119.54220 * 124.99782 * 3 2 1 5 5 C 1.38588 * 119.35281 * 180.02562 * 4 3 2 6 6 C 1.38628 * 118.48980 * 0.02562 * 5 4 3 7 7 C 1.39302 * 119.06098 * 0.02562 * 6 5 4 8 8 C 1.48069 * 119.72726 * 180.02562 * 7 6 5 9 9 O 1.21428 * 120.00107 * 359.97438 * 8 7 6 10 10 O 1.34684 * 120.00128 * 179.97438 * 8 7 6 11 11 C 1.45194 * 116.99881 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47239 * 329.99789 * 11 10 8 13 13 C 1.52997 * 109.47339 * 90.00032 * 11 10 8 14 14 C 1.50699 * 109.46963 * 210.00014 * 11 10 8 15 15 H 1.08003 * 120.00271 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00161 * 179.97438 * 14 11 10 17 17 N 1.31509 * 119.99895 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00268 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46959 * 90.00076 * 18 16 14 20 20 H 1.48491 * 109.47193 * 210.00468 * 18 16 14 21 21 H 1.48498 * 109.47096 * 330.00620 * 18 16 14 22 22 N 1.31475 * 119.55209 * 305.29639 * 3 2 1 23 23 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47505 * 300.00042 * 1 2 3 25 25 H 1.09000 * 109.47013 * 59.99738 * 1 2 3 26 26 H 1.08998 * 109.47000 * 240.00484 * 2 1 3 27 27 H 1.08998 * 109.47043 * 119.99710 * 2 1 3 28 28 H 1.07998 * 120.32485 * 0.04436 * 4 3 2 29 29 H 1.08000 * 120.74732 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.46587 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47153 * 59.99705 * 13 11 10 32 32 H 1.09001 * 109.46832 * 299.99896 * 13 11 10 33 33 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 34 34 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9123 1.8348 0.9880 5 6 3.3713 3.1425 0.9846 6 6 2.9294 3.9957 -0.0147 7 6 2.0439 3.5119 -0.9750 8 6 1.5630 4.4103 -2.0493 9 8 1.9402 5.5638 -2.0903 10 8 0.7072 3.9481 -2.9809 11 6 0.2773 4.8848 -4.0037 12 1 0.2735 5.8945 -3.5931 13 6 1.2401 4.8208 -5.1910 14 6 -1.1118 4.5241 -4.4633 15 1 -1.6209 3.6760 -4.0297 16 6 -1.7333 5.2775 -5.4365 17 7 -1.1137 6.3106 -5.9640 18 14 -3.4550 4.8300 -6.0067 19 1 -4.4542 5.5407 -5.1691 20 1 -3.6255 5.2294 -7.4267 21 1 -3.6538 3.3641 -5.8775 22 7 1.6253 2.2525 -0.9335 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.2373 1.1449 1.7527 29 1 4.0569 3.4890 1.7436 30 1 3.2670 5.0211 -0.0481 31 1 1.2440 3.8110 -5.6016 32 1 2.2448 5.0817 -4.8585 33 1 0.9171 5.5237 -5.9590 34 1 -1.5508 6.8404 -6.6490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835159242.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:30 Heat of formation + Delta-G solvation = -62.776747 kcal Electronic energy + Delta-G solvation = -17702.129037 eV Core-core repulsion = 14792.863729 eV Total energy + Delta-G solvation = -2909.265308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51571 -39.02434 -35.76156 -34.19702 -33.26724 -32.50113 -30.06098 -29.43651 -25.35834 -25.11540 -24.37741 -21.96179 -21.13184 -19.88599 -17.68652 -16.73258 -16.35713 -15.73454 -15.59857 -15.23653 -14.65497 -14.44809 -14.11521 -13.69845 -13.27151 -12.95935 -12.39226 -12.20295 -11.97834 -11.84570 -11.42346 -11.19788 -11.10286 -11.02144 -10.82057 -10.32910 -10.25871 -10.01511 -9.94311 -9.51473 -9.34618 -9.02181 -8.86344 -8.45487 -6.14563 -4.20663 0.67189 1.20200 2.93938 3.27927 3.32130 3.35886 3.46950 3.95949 4.19125 4.37594 4.53961 4.87765 5.00365 5.08278 5.18684 5.23243 5.34711 5.37039 5.58451 5.74298 5.86924 5.94608 6.05373 6.13374 6.37361 6.55749 6.66488 6.92630 6.93492 7.14468 7.60492 7.74177 7.83669 7.97821 8.17135 8.63582 8.91746 9.44218 10.93120 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.005751 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.925473 B = 4867.365940 C = 5689.921056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C 0.123 3.877 4 C -0.152 4.152 5 C -0.083 4.083 6 C -0.121 4.121 7 C 0.112 3.888 8 C 0.508 3.492 9 O -0.512 6.512 10 O -0.328 6.328 11 C 0.212 3.788 12 H 0.047 0.953 13 C -0.154 4.154 14 C -0.517 4.517 15 H 0.070 0.930 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.912 3.088 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 N -0.427 5.427 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.038 0.962 32 H 0.015 0.985 33 H 0.100 0.900 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -9.930 13.316 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.018 4.018 4 C -0.172 4.172 5 C -0.109 4.109 6 C -0.141 4.141 7 C -0.025 4.025 8 C 0.350 3.650 9 O -0.401 6.401 10 O -0.242 6.242 11 C 0.159 3.841 12 H 0.065 0.935 13 C -0.212 4.212 14 C -0.556 4.556 15 H 0.088 0.912 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.739 3.261 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.195 1.195 22 N -0.139 5.139 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.167 0.833 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.118 0.882 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.948 -9.688 12.432 17.225 hybrid contribution -0.163 0.353 0.268 0.472 sum 6.785 -9.335 12.700 17.160 Atomic orbital electron populations 1.21706 0.93825 1.01719 1.03268 1.20484 0.97384 0.89927 1.02999 1.21440 0.93494 0.96427 0.90413 1.22224 0.98345 0.96917 0.99747 1.21548 0.98449 0.93196 0.97659 1.22129 0.96296 1.01948 0.93715 1.20481 0.96337 0.90872 0.94857 1.20674 0.77717 0.85145 0.81419 1.90779 1.56257 1.18346 1.74759 1.86672 1.54612 1.46130 1.36805 1.20735 0.93621 0.88269 0.81447 0.93517 1.22162 0.95963 1.01841 1.01237 1.21028 0.98151 1.14640 1.21735 0.91166 1.24882 0.98748 0.94669 0.95692 1.69900 1.37693 1.17568 1.27702 0.86261 0.83074 0.78975 0.77769 1.20430 1.20970 1.19542 1.67528 1.21372 1.02382 1.22581 0.92386 0.93022 0.90772 0.89771 0.90470 0.84422 0.84028 0.83315 0.94306 0.96547 0.88152 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.77 37.16 0.36 -1.29 16 2 C -0.07 -0.72 6.33 -27.88 -0.18 -0.90 16 3 C 0.12 1.63 6.19 -82.60 -0.51 1.12 16 4 C -0.15 -1.59 9.72 -39.31 -0.38 -1.97 16 5 C -0.08 -0.89 10.17 -39.31 -0.40 -1.29 16 6 C -0.12 -1.74 9.63 -39.04 -0.38 -2.12 16 7 C 0.11 2.06 6.75 -83.03 -0.56 1.50 16 8 C 0.51 11.65 7.92 34.76 0.28 11.93 16 9 O -0.51 -12.47 15.58 -19.21 -0.30 -12.76 16 10 O -0.33 -8.46 9.68 -40.45 -0.39 -8.85 16 11 C 0.21 5.92 2.56 -27.88 -0.07 5.85 16 12 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 13 C -0.15 -4.05 9.33 37.16 0.35 -3.71 16 14 C -0.52 -15.01 8.90 -34.44 -0.31 -15.31 16 15 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 18 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 N -0.43 -7.53 9.62 -6.07 -0.06 -7.59 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.05 7.94 -51.93 -0.41 0.63 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 28 H 0.14 0.93 7.95 -52.49 -0.42 0.52 16 29 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.15 2.02 7.64 -52.49 -0.40 1.62 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 2.78 6.07 -51.93 -0.32 2.46 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 299.13 15.07 4.51 4.51 Total: -1.00 -32.34 299.13 -6.93 -39.27 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.41 Total: -1.46 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.89 Total: -4.53 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.57 Total: -32.68 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.69 Total: -21.61 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.34 -6.93 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159242.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.504 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds