Wall clock time and date at job start Mon Mar 30 2020 18:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46744 * 2 1 4 4 C 1.38632 * 119.54220 * 124.99782 * 3 2 1 5 5 C 1.38588 * 119.35281 * 180.02562 * 4 3 2 6 6 C 1.38628 * 118.48980 * 0.02562 * 5 4 3 7 7 C 1.39302 * 119.06098 * 0.02562 * 6 5 4 8 8 C 1.48069 * 119.72726 * 180.02562 * 7 6 5 9 9 O 1.21428 * 120.00107 * 359.97438 * 8 7 6 10 10 O 1.34684 * 120.00128 * 179.97438 * 8 7 6 11 11 C 1.45194 * 116.99881 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47239 * 329.99789 * 11 10 8 13 13 C 1.52997 * 109.47339 * 90.00032 * 11 10 8 14 14 C 1.50699 * 109.46963 * 210.00014 * 11 10 8 15 15 H 1.08003 * 120.00271 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00161 * 179.97438 * 14 11 10 17 17 N 1.31509 * 119.99895 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00268 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46959 * 90.00076 * 18 16 14 20 20 H 1.48491 * 109.47193 * 210.00468 * 18 16 14 21 21 H 1.48498 * 109.47096 * 330.00620 * 18 16 14 22 22 N 1.31475 * 119.55209 * 305.29639 * 3 2 1 23 23 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47505 * 300.00042 * 1 2 3 25 25 H 1.09000 * 109.47013 * 59.99738 * 1 2 3 26 26 H 1.08998 * 109.47000 * 240.00484 * 2 1 3 27 27 H 1.08998 * 109.47043 * 119.99710 * 2 1 3 28 28 H 1.07998 * 120.32485 * 0.04436 * 4 3 2 29 29 H 1.08000 * 120.74732 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.46587 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47153 * 59.99705 * 13 11 10 32 32 H 1.09001 * 109.46832 * 299.99896 * 13 11 10 33 33 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 34 34 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9123 1.8348 0.9880 5 6 3.3713 3.1425 0.9846 6 6 2.9294 3.9957 -0.0147 7 6 2.0439 3.5119 -0.9750 8 6 1.5630 4.4103 -2.0493 9 8 1.9402 5.5638 -2.0903 10 8 0.7072 3.9481 -2.9809 11 6 0.2773 4.8848 -4.0037 12 1 0.2735 5.8945 -3.5931 13 6 1.2401 4.8208 -5.1910 14 6 -1.1118 4.5241 -4.4633 15 1 -1.6209 3.6760 -4.0297 16 6 -1.7333 5.2775 -5.4365 17 7 -1.1137 6.3106 -5.9640 18 14 -3.4550 4.8300 -6.0067 19 1 -4.4542 5.5407 -5.1691 20 1 -3.6255 5.2294 -7.4267 21 1 -3.6538 3.3641 -5.8775 22 7 1.6253 2.2525 -0.9335 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.2373 1.1449 1.7527 29 1 4.0569 3.4890 1.7436 30 1 3.2670 5.0211 -0.0481 31 1 1.2440 3.8110 -5.6016 32 1 2.2448 5.0817 -4.8585 33 1 0.9171 5.5237 -5.9590 34 1 -1.5508 6.8404 -6.6490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835159242.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:30 Heat of formation + Delta-G solvation = -82.957801 kcal Electronic energy + Delta-G solvation = -17703.004153 eV Core-core repulsion = 14792.863729 eV Total energy + Delta-G solvation = -2910.140424 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.82729 -40.65787 -37.69862 -35.38639 -35.16100 -33.61695 -31.73747 -30.94297 -27.51389 -26.52518 -25.39103 -23.55735 -22.28937 -21.64649 -19.37246 -18.65721 -17.80289 -17.22875 -16.98698 -16.79153 -16.48186 -15.67418 -15.28658 -14.87571 -14.70561 -14.28285 -14.11219 -13.93355 -13.29786 -13.26914 -13.01416 -12.87747 -12.86315 -12.43218 -12.37587 -12.17887 -11.95720 -11.74911 -11.64376 -11.04783 -10.95167 -10.63883 -10.48230 -10.09030 -8.31664 -6.48730 -0.51209 0.22955 1.38844 1.41477 1.42520 1.53668 1.82074 2.37432 2.74428 2.98453 3.09254 3.65473 3.86763 3.93156 4.05034 4.36082 4.38162 4.45998 4.49515 4.54670 4.72516 4.75529 4.87304 4.99442 5.04647 5.07988 5.12132 5.24545 5.42869 5.46245 5.55280 5.62458 5.80570 5.99013 6.51157 6.70462 6.97776 7.22429 8.76556 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.005751 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.925473 B = 4867.365940 C = 5689.921056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.107 3.893 4 C -0.123 4.123 5 C -0.069 4.069 6 C -0.118 4.118 7 C 0.068 3.932 8 C 0.500 3.500 9 O -0.540 6.540 10 O -0.344 6.344 11 C 0.213 3.787 12 H 0.010 0.990 13 C -0.140 4.140 14 C -0.550 4.550 15 H 0.063 0.937 16 C 0.018 3.982 17 N -0.916 5.916 18 Si 0.985 3.015 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.265 1.265 22 N -0.469 5.469 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.193 0.807 29 H 0.192 0.808 30 H 0.149 0.851 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.086 0.914 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -12.064 15.656 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.035 4.035 4 C -0.142 4.142 5 C -0.094 4.094 6 C -0.139 4.139 7 C -0.067 4.067 8 C 0.345 3.655 9 O -0.432 6.432 10 O -0.258 6.258 11 C 0.160 3.840 12 H 0.028 0.972 13 C -0.198 4.198 14 C -0.587 4.587 15 H 0.081 0.919 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.808 3.192 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.189 1.189 22 N -0.181 5.181 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.141 0.859 28 H 0.210 0.790 29 H 0.209 0.791 30 H 0.167 0.833 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.656 -11.815 14.779 20.412 hybrid contribution -0.285 0.953 -0.308 1.041 sum 7.371 -10.863 14.471 19.538 Atomic orbital electron populations 1.21678 0.95021 1.02505 1.01230 1.20643 0.96309 0.88516 1.05098 1.22113 0.94091 0.97001 0.90257 1.22830 0.95142 0.97418 0.98780 1.22105 0.97928 0.92605 0.96806 1.22293 0.95192 1.02750 0.93643 1.20030 0.99854 0.91370 0.95470 1.21666 0.76408 0.85883 0.81542 1.90726 1.57134 1.19749 1.75543 1.86661 1.56027 1.45716 1.37443 1.20475 0.94251 0.86980 0.82287 0.97235 1.21975 0.95918 1.01611 1.00268 1.21245 0.99078 1.15293 1.23106 0.91921 1.25845 1.03109 0.94119 0.95112 1.70007 1.39493 1.18094 1.27751 0.85149 0.77342 0.78954 0.77755 1.19561 1.19537 1.18913 1.67345 1.23003 1.02593 1.25171 0.90160 0.92916 0.94948 0.89998 0.85884 0.79032 0.79097 0.83321 0.93775 0.95798 0.89587 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.77 71.98 0.70 -2.41 16 2 C -0.07 -1.21 6.33 29.85 0.19 -1.02 16 3 C 0.11 2.59 6.19 42.71 0.26 2.86 16 4 C -0.12 -1.92 9.72 22.45 0.22 -1.71 16 5 C -0.07 -1.18 10.17 22.45 0.23 -0.95 16 6 C -0.12 -3.30 9.63 22.62 0.22 -3.08 16 7 C 0.07 2.58 6.75 41.87 0.28 2.86 16 8 C 0.50 24.54 7.92 70.43 0.56 25.10 16 9 O -0.54 -28.19 15.58 20.07 0.31 -27.88 16 10 O -0.34 -18.99 9.68 -55.94 -0.54 -19.53 16 11 C 0.21 12.68 2.56 29.85 0.08 12.76 16 12 H 0.01 0.64 7.16 -2.39 -0.02 0.62 16 13 C -0.14 -7.73 9.33 71.98 0.67 -7.06 16 14 C -0.55 -33.32 8.90 25.60 0.23 -33.09 16 15 H 0.06 3.78 7.81 -2.91 -0.02 3.76 16 16 C 0.02 1.03 5.30 84.66 0.45 1.48 16 17 N -0.92 -54.20 11.32 21.45 0.24 -53.96 16 18 Si 0.99 44.57 29.54 68.60 2.03 46.60 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 N -0.47 -16.80 9.62 -173.11 -1.67 -18.46 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.03 0.94 7.94 -2.39 -0.02 0.92 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.12 1.07 7.87 -2.39 -0.02 1.05 16 28 H 0.19 1.02 7.95 -2.91 -0.02 1.00 16 29 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 30 H 0.15 4.03 7.64 -2.91 -0.02 4.00 16 31 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 4.97 6.07 -2.38 -0.01 4.96 16 34 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -76.83 299.13 5.55 -71.28 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.09 Total: 6.23 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 4.09 Total: -4.27 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.42 Total: -72.42 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.23 Total: -47.42 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -76.83 5.55 -71.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159242.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.681 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds