Wall clock time and date at job start Mon Mar 30 2020 18:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47248 * 2 1 4 4 C 1.36753 * 119.99539 * 280.51445 * 3 2 1 5 5 H 1.07998 * 119.99326 * 181.52045 * 4 3 2 6 6 C 1.39069 * 120.00251 * 1.51596 * 4 3 2 7 7 N 1.31356 * 119.99972 * 5.98449 * 6 4 3 8 8 Si 1.86797 * 120.00041 * 185.98443 * 6 4 3 9 9 H 1.48500 * 109.47358 * 60.00190 * 8 6 4 10 10 H 1.48504 * 109.47175 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47375 * 300.00150 * 8 6 4 12 12 C 1.34768 * 120.00620 * 100.51347 * 3 2 1 13 13 O 1.21838 * 120.00555 * 188.43516 * 12 3 2 14 14 C 1.41341 * 119.99851 * 8.43164 * 12 3 2 15 15 C 1.50703 * 120.00048 * 332.93455 * 14 12 3 16 16 C 1.35789 * 120.00098 * 152.92639 * 14 12 3 17 17 C 1.41518 * 120.00177 * 182.39646 * 16 14 12 18 18 C 1.38025 * 126.11446 * 178.27396 * 17 16 14 19 19 C 1.40291 * 106.53068 * 180.02562 * 18 17 16 20 20 C 1.35173 * 107.21129 * 0.02562 * 19 18 17 21 21 O 1.34046 * 109.04403 * 359.97438 * 20 19 18 22 22 H 1.09007 * 109.47120 * 70.87383 * 1 2 3 23 23 H 1.09000 * 109.47432 * 190.86539 * 1 2 3 24 24 H 1.09001 * 109.47781 * 310.87358 * 1 2 3 25 25 H 1.09000 * 109.47568 * 239.99317 * 2 1 3 26 26 H 1.09001 * 109.46875 * 119.99460 * 2 1 3 27 27 H 0.97002 * 120.00232 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46777 * 215.73084 * 15 14 12 29 29 H 1.08998 * 109.46440 * 335.72329 * 15 14 12 30 30 H 1.08999 * 109.47519 * 95.72717 * 15 14 12 31 31 H 1.07994 * 120.00205 * 2.39476 * 16 14 12 32 32 H 1.08005 * 126.73631 * 0.02562 * 18 17 16 33 33 H 1.07997 * 126.39568 * 180.02562 * 19 18 17 34 34 H 1.07996 * 125.47948 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0424 2.0978 -1.1645 5 1 2.4253 3.1076 -1.1691 6 6 1.5740 1.5262 -2.3426 7 7 1.0010 0.3445 -2.3167 8 14 1.7597 2.4389 -3.9618 9 1 3.1997 2.6838 -4.2297 10 1 1.1835 1.6216 -5.0596 11 1 1.0431 3.7372 -3.8833 12 6 2.4437 1.9456 1.1475 13 8 2.7041 3.1354 1.1813 14 6 2.5878 1.1574 2.3118 15 6 1.7472 -0.0803 2.4926 16 6 3.4837 1.5151 3.2673 17 6 3.6644 0.6988 4.4092 18 6 4.5592 0.9227 5.4359 19 6 4.3948 -0.1323 6.3459 20 6 3.4302 -0.9401 5.8516 21 8 2.9931 -0.4381 4.6881 22 1 -0.3634 0.3367 -0.9710 23 1 -0.3634 -1.0092 0.1937 24 1 -0.3635 0.6725 0.7770 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 0.6740 -0.0540 -3.1384 28 1 1.4890 -0.1935 3.5455 29 1 0.8352 0.0106 1.9026 30 1 2.3094 -0.9531 2.1605 31 1 4.0585 2.4226 3.1560 32 1 5.2504 1.7481 5.5220 33 1 4.9375 -0.2729 7.2689 34 1 3.0691 -1.8440 6.3194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846841009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:52 Heat of formation + Delta-G solvation = 56.425064 kcal Electronic energy + Delta-G solvation = -18348.129043 eV Core-core repulsion = 15444.032713 eV Total energy + Delta-G solvation = -2904.096329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.25603 -39.27909 -35.44195 -34.54009 -32.88427 -31.94907 -30.14157 -28.99189 -26.22760 -25.40441 -22.89000 -21.74964 -21.48021 -20.24818 -18.38808 -17.00191 -16.59067 -15.88251 -15.57532 -14.88610 -14.57284 -14.23777 -13.82487 -13.51274 -12.98485 -12.67170 -12.55701 -12.45266 -12.18715 -11.87352 -11.42336 -11.31828 -11.08527 -10.79961 -10.52624 -10.39467 -10.19693 -9.98032 -9.63026 -9.36577 -8.83307 -8.40268 -7.81058 -7.35224 -6.30973 -3.84820 1.04636 2.46009 3.07951 3.16946 3.21379 3.23353 3.28588 4.01528 4.23841 4.87419 5.07582 5.10693 5.16243 5.38869 5.54581 5.69440 5.91095 6.00030 6.02403 6.08321 6.28651 6.40422 6.54805 6.61935 6.64865 6.76091 6.80221 6.95766 7.03056 7.28676 7.42598 7.55168 7.82300 7.99749 8.44649 9.08666 9.34092 9.94356 10.48337 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043852 B = 0.005667 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.363014 B = 4940.110264 C = 5389.784435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 N -0.417 5.417 4 C -0.279 4.279 5 H 0.107 0.893 6 C 0.019 3.981 7 N -0.861 5.861 8 Si 0.937 3.063 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.450 3.550 13 O -0.607 6.607 14 C -0.092 4.092 15 C -0.142 4.142 16 C -0.098 4.098 17 C 0.046 3.954 18 C -0.214 4.214 19 C -0.209 4.209 20 C -0.065 4.065 21 O -0.160 6.160 22 H 0.102 0.898 23 H 0.034 0.966 24 H 0.023 0.977 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.268 0.732 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -5.997 9.522 11.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.056 4.056 3 N -0.131 5.131 4 C -0.408 4.408 5 H 0.125 0.875 6 C -0.183 4.183 7 N -0.502 5.502 8 Si 0.763 3.237 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.242 3.758 13 O -0.496 6.496 14 C -0.096 4.096 15 C -0.197 4.197 16 C -0.119 4.119 17 C -0.003 4.003 18 C -0.234 4.234 19 C -0.228 4.228 20 C -0.133 4.133 21 O -0.056 6.056 22 H 0.120 0.880 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.128 0.872 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.713 -5.700 9.104 10.878 hybrid contribution 0.146 0.265 -0.555 0.632 sum 1.859 -5.436 8.549 10.300 Atomic orbital electron populations 1.22363 0.96614 0.98287 1.03508 1.22983 0.95074 0.83620 1.03893 1.43941 1.50272 1.12091 1.06821 1.19959 1.36964 0.99442 0.84431 0.87482 1.25416 0.96157 0.96631 1.00140 1.70139 1.36651 1.15649 1.27797 0.85805 0.78962 0.79051 0.79854 1.19741 1.20727 1.19728 1.16399 0.87662 0.88031 0.83662 1.90672 1.58610 1.15244 1.85077 1.21274 0.96317 0.96686 0.95296 1.21836 1.00751 0.94745 1.02339 1.20180 1.01954 0.98879 0.90925 1.20048 0.95422 0.87403 0.97451 1.22103 1.03574 1.02221 0.95463 1.21613 1.02012 0.97083 1.02083 1.24128 1.00053 1.01327 0.87763 1.84401 1.52371 1.33831 1.35037 0.88012 0.94731 0.95832 0.87171 0.90495 0.92080 0.91268 0.88735 0.90217 0.83226 0.83505 0.83904 0.78703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.37 37.15 0.31 -2.87 16 2 C 0.07 1.48 4.86 -4.05 -0.02 1.46 16 3 N -0.42 -10.74 2.65 -118.15 -0.31 -11.05 16 4 C -0.28 -7.62 9.48 -15.05 -0.14 -7.77 16 5 H 0.11 3.07 7.19 -52.49 -0.38 2.69 16 6 C 0.02 0.47 5.34 -17.45 -0.09 0.37 16 7 N -0.86 -21.01 6.99 55.50 0.39 -20.62 16 8 Si 0.94 19.98 29.56 -169.99 -5.02 14.95 16 9 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.45 11.53 7.18 -15.08 -0.11 11.42 16 13 O -0.61 -17.53 16.02 5.07 0.08 -17.45 16 14 C -0.09 -1.94 5.67 -104.32 -0.59 -2.53 16 15 C -0.14 -2.53 6.67 36.01 0.24 -2.29 16 16 C -0.10 -1.88 9.38 -39.21 -0.37 -2.24 16 17 C 0.05 0.78 6.69 -38.41 -0.26 0.52 16 18 C -0.21 -3.12 10.90 -38.89 -0.42 -3.54 16 19 C -0.21 -2.60 10.87 -39.90 -0.43 -3.03 16 20 C -0.06 -0.79 12.06 29.64 0.36 -0.43 16 21 O -0.16 -2.48 7.11 4.59 0.03 -2.45 16 22 H 0.10 2.41 5.61 -51.93 -0.29 2.12 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.02 0.49 7.18 -51.93 -0.37 0.12 16 25 H 0.11 2.65 5.87 -51.93 -0.30 2.35 16 26 H 0.08 1.53 2.75 -83.30 -0.23 1.30 16 27 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 28 H 0.07 1.15 5.60 -51.93 -0.29 0.86 16 29 H 0.09 1.75 3.59 -51.93 -0.19 1.56 16 30 H 0.08 1.33 6.84 -51.93 -0.36 0.97 16 31 H 0.15 2.90 7.69 -52.49 -0.40 2.49 16 32 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 274.05 15.07 4.13 4.13 Total: -1.00 -29.80 274.05 -5.87 -35.67 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -3.64 Total: 7.76 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.53 Total: -10.94 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.08 Total: -31.67 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.11 Total: -19.90 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.80 -5.87 -35.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846841009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.095 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds