Wall clock time and date at job start Mon Mar 30 2020 18:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47248 * 2 1 4 4 C 1.36753 * 119.99539 * 280.51445 * 3 2 1 5 5 H 1.07998 * 119.99326 * 181.52045 * 4 3 2 6 6 C 1.39069 * 120.00251 * 1.51596 * 4 3 2 7 7 N 1.31356 * 119.99972 * 5.98449 * 6 4 3 8 8 Si 1.86797 * 120.00041 * 185.98443 * 6 4 3 9 9 H 1.48500 * 109.47358 * 60.00190 * 8 6 4 10 10 H 1.48504 * 109.47175 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47375 * 300.00150 * 8 6 4 12 12 C 1.34768 * 120.00620 * 100.51347 * 3 2 1 13 13 O 1.21838 * 120.00555 * 188.43516 * 12 3 2 14 14 C 1.41341 * 119.99851 * 8.43164 * 12 3 2 15 15 C 1.50703 * 120.00048 * 332.93455 * 14 12 3 16 16 C 1.35789 * 120.00098 * 152.92639 * 14 12 3 17 17 C 1.41518 * 120.00177 * 182.39646 * 16 14 12 18 18 C 1.38025 * 126.11446 * 178.27396 * 17 16 14 19 19 C 1.40291 * 106.53068 * 180.02562 * 18 17 16 20 20 C 1.35173 * 107.21129 * 0.02562 * 19 18 17 21 21 O 1.34046 * 109.04403 * 359.97438 * 20 19 18 22 22 H 1.09007 * 109.47120 * 70.87383 * 1 2 3 23 23 H 1.09000 * 109.47432 * 190.86539 * 1 2 3 24 24 H 1.09001 * 109.47781 * 310.87358 * 1 2 3 25 25 H 1.09000 * 109.47568 * 239.99317 * 2 1 3 26 26 H 1.09001 * 109.46875 * 119.99460 * 2 1 3 27 27 H 0.97002 * 120.00232 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46777 * 215.73084 * 15 14 12 29 29 H 1.08998 * 109.46440 * 335.72329 * 15 14 12 30 30 H 1.08999 * 109.47519 * 95.72717 * 15 14 12 31 31 H 1.07994 * 120.00205 * 2.39476 * 16 14 12 32 32 H 1.08005 * 126.73631 * 0.02562 * 18 17 16 33 33 H 1.07997 * 126.39568 * 180.02562 * 19 18 17 34 34 H 1.07996 * 125.47948 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0424 2.0978 -1.1645 5 1 2.4253 3.1076 -1.1691 6 6 1.5740 1.5262 -2.3426 7 7 1.0010 0.3445 -2.3167 8 14 1.7597 2.4389 -3.9618 9 1 3.1997 2.6838 -4.2297 10 1 1.1835 1.6216 -5.0596 11 1 1.0431 3.7372 -3.8833 12 6 2.4437 1.9456 1.1475 13 8 2.7041 3.1354 1.1813 14 6 2.5878 1.1574 2.3118 15 6 1.7472 -0.0803 2.4926 16 6 3.4837 1.5151 3.2673 17 6 3.6644 0.6988 4.4092 18 6 4.5592 0.9227 5.4359 19 6 4.3948 -0.1323 6.3459 20 6 3.4302 -0.9401 5.8516 21 8 2.9931 -0.4381 4.6881 22 1 -0.3634 0.3367 -0.9710 23 1 -0.3634 -1.0092 0.1937 24 1 -0.3635 0.6725 0.7770 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 0.6740 -0.0540 -3.1384 28 1 1.4890 -0.1935 3.5455 29 1 0.8352 0.0106 1.9026 30 1 2.3094 -0.9531 2.1605 31 1 4.0585 2.4226 3.1560 32 1 5.2504 1.7481 5.5220 33 1 4.9375 -0.2729 7.2689 34 1 3.0691 -1.8440 6.3194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846841009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:51 Heat of formation + Delta-G solvation = 38.673894 kcal Electronic energy + Delta-G solvation = -18348.898791 eV Core-core repulsion = 15444.032713 eV Total energy + Delta-G solvation = -2904.866078 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.39597 -41.08940 -37.34462 -36.17035 -34.07129 -33.70321 -31.84311 -30.43153 -27.66025 -27.21529 -24.53096 -23.41031 -22.59562 -21.61511 -19.92138 -18.91869 -17.83193 -17.43050 -16.96984 -16.68853 -16.10740 -16.00163 -15.38188 -15.11642 -14.73846 -14.17267 -13.84258 -13.66612 -13.54160 -13.41526 -13.09890 -12.95699 -12.78244 -12.62478 -12.21874 -12.07325 -11.98987 -11.40124 -11.17559 -10.75906 -10.55173 -10.37142 -9.68691 -8.67554 -8.18714 -5.86583 -0.33675 1.28698 1.40970 1.45753 1.50988 1.88692 2.16383 2.24695 2.44849 3.10908 3.17577 3.95414 4.03329 4.13543 4.21422 4.23741 4.47414 4.66333 4.73983 4.86541 4.92060 4.98043 5.02974 5.06435 5.17114 5.20464 5.32770 5.40423 5.55182 5.66787 5.71610 6.04278 6.07140 6.26452 6.53649 7.13717 7.44743 8.01788 8.57641 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043852 B = 0.005667 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.363014 B = 4940.110264 C = 5389.784435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 N -0.430 5.430 4 C -0.335 4.335 5 H 0.074 0.926 6 C -0.004 4.004 7 N -0.862 5.862 8 Si 0.996 3.004 9 H -0.274 1.274 10 H -0.263 1.263 11 H -0.277 1.277 12 C 0.441 3.559 13 O -0.658 6.658 14 C -0.143 4.143 15 C -0.125 4.125 16 C -0.057 4.057 17 C -0.009 4.009 18 C -0.188 4.188 19 C -0.221 4.221 20 C -0.036 4.036 21 O -0.171 6.171 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.016 0.984 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.275 0.725 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.177 0.823 34 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 -8.416 11.778 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.053 4.053 3 N -0.144 5.144 4 C -0.463 4.463 5 H 0.092 0.908 6 C -0.206 4.206 7 N -0.501 5.501 8 Si 0.819 3.181 9 H -0.199 1.199 10 H -0.187 1.187 11 H -0.203 1.203 12 C 0.235 3.765 13 O -0.551 6.551 14 C -0.146 4.146 15 C -0.180 4.180 16 C -0.078 4.078 17 C -0.058 4.058 18 C -0.208 4.208 19 C -0.240 4.240 20 C -0.104 4.104 21 O -0.067 6.067 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.195 0.805 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.022 -8.167 11.361 14.137 hybrid contribution 0.195 0.937 -0.872 1.295 sum 2.217 -7.230 10.489 12.931 Atomic orbital electron populations 1.22211 0.95818 0.99921 1.01744 1.23117 0.95691 0.82099 1.04380 1.44095 1.50803 1.13102 1.06389 1.19798 1.40837 0.99294 0.86383 0.90783 1.26052 0.95023 0.97474 1.02059 1.70239 1.35470 1.15705 1.28685 0.84961 0.78615 0.77920 0.76597 1.19943 1.18671 1.20296 1.17148 0.86559 0.87872 0.84912 1.90599 1.60655 1.17629 1.86236 1.21086 0.99901 0.98927 0.94650 1.21638 0.99648 0.93442 1.03232 1.20222 0.99172 0.97748 0.90688 1.19720 0.98603 0.89218 0.98229 1.22567 1.01395 1.02393 0.94419 1.22055 1.02668 0.96201 1.03076 1.25213 0.98055 1.01481 0.85676 1.84359 1.52556 1.33341 1.36464 0.90549 0.91440 0.96476 0.88998 0.87601 0.91450 0.89626 0.89727 0.89020 0.84518 0.82127 0.80543 0.74100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.93 8.37 71.98 0.60 -5.33 16 2 C 0.07 3.10 4.86 86.38 0.42 3.52 16 3 N -0.43 -23.33 2.65 -645.89 -1.71 -25.04 16 4 C -0.33 -19.43 9.48 84.13 0.80 -18.63 16 5 H 0.07 4.64 7.19 -2.91 -0.02 4.62 16 6 C 0.00 -0.21 5.34 84.96 0.45 0.25 16 7 N -0.86 -42.63 6.99 21.68 0.15 -42.47 16 8 Si 1.00 41.98 29.56 68.60 2.03 44.01 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 C 0.44 23.93 7.18 85.01 0.61 24.54 16 13 O -0.66 -40.80 16.02 -4.79 -0.08 -40.88 16 14 C -0.14 -6.16 5.67 -19.67 -0.11 -6.27 16 15 C -0.12 -4.34 6.67 71.24 0.48 -3.87 16 16 C -0.06 -2.20 9.38 22.51 0.21 -1.99 16 17 C -0.01 -0.28 6.69 23.03 0.15 -0.12 16 18 C -0.19 -4.84 10.90 22.72 0.25 -4.59 16 19 C -0.22 -4.34 10.87 22.06 0.24 -4.11 16 20 C -0.04 -0.69 12.06 67.11 0.81 0.12 16 21 O -0.17 -4.68 7.11 -6.51 -0.05 -4.73 16 22 H 0.08 3.67 5.61 -2.38 -0.01 3.65 16 23 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.02 0.72 7.18 -2.39 -0.02 0.70 16 25 H 0.09 4.51 5.87 -2.39 -0.01 4.49 16 26 H 0.11 4.18 2.75 -31.86 -0.09 4.09 16 27 H 0.27 12.62 8.31 -92.71 -0.77 11.85 16 28 H 0.09 2.67 5.60 -2.39 -0.01 2.65 16 29 H 0.08 3.09 3.59 -2.39 -0.01 3.08 16 30 H 0.09 2.90 6.84 -2.39 -0.02 2.88 16 31 H 0.14 5.50 7.69 -2.91 -0.02 5.48 16 32 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.24 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -69.58 274.05 6.30 -63.28 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.05 Total: 22.32 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 4.91 Total: -16.48 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -1.56 Total: -67.51 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -0.12 Total: -45.61 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -69.58 6.30 -63.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846841009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.954 kcal (2) G-P(sol) polarization free energy of solvation -69.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds