Wall clock time and date at job start Mon Mar 30 2020 18:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35623 * 119.99874 * 2 1 4 4 C 1.41606 * 120.00521 * 353.70377 * 3 2 1 5 5 C 1.37950 * 126.10558 * 173.72598 * 4 3 2 6 6 C 1.40316 * 106.52603 * 179.97438 * 5 4 3 7 7 C 1.35154 * 107.20817 * 359.97438 * 6 5 4 8 8 O 1.34026 * 109.03224 * 359.97438 * 7 6 5 9 9 C 1.41550 * 119.99779 * 180.02562 * 2 1 3 10 10 O 1.21778 * 119.99778 * 179.97438 * 9 2 1 11 11 N 1.34777 * 120.00259 * 359.97438 * 9 2 1 12 12 C 1.46501 * 119.99838 * 180.02562 * 11 9 2 13 13 C 1.53008 * 109.46812 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99638 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99737 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99841 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99907 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47164 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47166 * 120.00119 * 18 16 14 21 21 H 1.48500 * 109.47259 * 240.00217 * 18 16 14 22 22 H 1.09002 * 109.47659 * 84.72199 * 1 2 3 23 23 H 1.08996 * 109.47038 * 204.72643 * 1 2 3 24 24 H 1.09008 * 109.47061 * 324.72668 * 1 2 3 25 25 H 1.08006 * 119.99769 * 173.69435 * 3 2 1 26 26 H 1.07999 * 126.73878 * 359.97438 * 5 4 3 27 27 H 1.07997 * 126.39382 * 179.97438 * 6 5 4 28 28 H 1.07997 * 125.48543 * 180.02562 * 7 6 5 29 29 H 0.97000 * 120.00043 * 0.02562 * 11 9 2 30 30 H 1.09002 * 109.47164 * 299.99285 * 12 11 9 31 31 H 1.08994 * 109.47488 * 59.99684 * 12 11 9 32 32 H 1.09002 * 109.46524 * 299.99496 * 13 12 11 33 33 H 1.09002 * 109.47234 * 59.99695 * 13 12 11 34 34 H 0.97007 * 119.99667 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 1.4835 2.3972 -0.1345 5 6 2.0258 3.6614 -0.0299 6 6 0.9723 4.5657 -0.2327 7 6 -0.1448 3.8362 -0.4486 8 8 0.1656 2.5337 -0.3899 9 6 2.2147 -1.2259 -0.0005 10 8 3.4325 -1.2259 -0.0010 11 7 1.5408 -2.3931 -0.0005 12 6 2.2734 -3.6618 -0.0005 13 6 1.2791 -4.8248 -0.0012 14 6 2.0326 -6.1299 -0.0018 15 1 3.1125 -6.1298 -0.0022 16 6 1.3432 -7.3239 -0.0019 17 7 0.0281 -7.3238 -0.0020 18 14 2.2771 -8.9416 -0.0035 19 1 3.7372 -8.6703 -0.0037 20 1 1.9192 -9.7210 1.2090 21 1 1.9175 -9.7197 -1.2161 22 1 -0.3634 0.0945 -1.0233 23 1 -0.3633 -0.9334 0.4298 24 1 -0.3633 0.8391 0.5935 25 1 3.2602 1.1774 0.1027 26 1 3.0586 3.9068 0.1691 27 1 1.0412 5.6433 -0.2189 28 1 -1.1290 4.2381 -0.6387 29 1 0.5708 -2.3931 -0.0005 30 1 2.8999 -3.7196 -0.8906 31 1 2.9001 -3.7196 0.8893 32 1 0.6522 -4.7672 0.8887 33 1 0.6527 -4.7668 -0.8914 34 1 -0.4570 -8.1639 -0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846958937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:57 Heat of formation + Delta-G solvation = -38.375259 kcal Electronic energy + Delta-G solvation = -17022.728415 eV Core-core repulsion = 14114.521235 eV Total energy + Delta-G solvation = -2908.207180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.49702 -41.04390 -36.76620 -36.11757 -34.86327 -34.06790 -31.97867 -30.47815 -27.76096 -26.99955 -24.67631 -22.89386 -22.64581 -21.69197 -20.28545 -18.54427 -17.97883 -17.69930 -17.15652 -16.90537 -16.51363 -16.47099 -15.52174 -15.07909 -15.00870 -14.30872 -14.05673 -13.87620 -13.60617 -13.48142 -13.28439 -13.19993 -12.96095 -12.64593 -12.51435 -12.27450 -11.68857 -11.47184 -11.41694 -10.95000 -10.70147 -10.61908 -10.07116 -8.81687 -8.24914 -6.35507 -0.57718 1.18837 1.40938 1.41673 1.55150 1.74721 2.07490 2.29573 2.37538 2.48591 3.09782 3.75673 3.90489 4.01244 4.13354 4.16299 4.39099 4.47331 4.58782 4.73280 4.75014 4.83302 4.92595 4.99816 5.08427 5.17929 5.26215 5.41282 5.49311 5.56054 5.59754 5.77592 6.14353 6.15043 6.58051 6.77631 7.20221 7.33869 8.87310 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.065190 B = 0.003402 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.413068 B = 8229.115792 C = 8624.796069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.191 4.191 3 C 0.006 3.994 4 C -0.035 4.035 5 C -0.163 4.163 6 C -0.229 4.229 7 C -0.018 4.018 8 O -0.170 6.170 9 C 0.546 3.454 10 O -0.596 6.596 11 N -0.713 5.713 12 C 0.139 3.861 13 C 0.022 3.978 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.155 0.845 26 H 0.169 0.831 27 H 0.177 0.823 28 H 0.243 0.757 29 H 0.409 0.591 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 23.824 -0.388 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.194 4.194 3 C -0.014 4.014 4 C -0.083 4.083 5 C -0.182 4.182 6 C -0.248 4.248 7 C -0.087 4.087 8 O -0.066 6.066 9 C 0.338 3.662 10 O -0.480 6.480 11 N -0.364 5.364 12 C 0.015 3.985 13 C -0.015 4.015 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.566 5.566 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.172 0.828 26 H 0.186 0.814 27 H 0.194 0.806 28 H 0.259 0.741 29 H 0.247 0.753 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.143 23.406 -0.425 23.508 hybrid contribution 0.064 -0.968 0.029 0.971 sum -2.079 22.438 -0.396 22.538 Atomic orbital electron populations 1.20902 0.88777 1.03345 1.03598 1.20974 0.98211 0.92156 1.08014 1.20599 0.99660 0.87953 0.93143 1.19741 0.82082 0.95165 1.11327 1.22730 1.02032 0.90813 1.02656 1.22143 0.92184 1.02212 1.08232 1.25255 1.02361 0.79457 1.01627 1.84325 1.24865 1.28640 1.68722 1.17309 0.87188 0.85191 0.76529 1.90771 1.15244 1.88757 1.53225 1.46185 1.11147 1.05766 1.73324 1.21263 0.95116 0.82150 0.99949 1.19146 0.94219 0.91795 0.96357 1.21491 0.93602 0.91878 1.51531 0.92278 1.25889 0.95827 1.03155 0.94368 1.70068 1.07552 1.27977 1.51014 0.85369 0.78931 0.78639 0.77934 1.18978 1.20150 1.20153 0.89954 0.91235 0.89447 0.82754 0.81391 0.80577 0.74139 0.75296 0.93428 0.93348 0.97290 0.97321 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 8.22 71.24 0.59 -1.92 16 2 C -0.19 -5.46 5.89 -19.65 -0.12 -5.58 16 3 C 0.01 0.16 9.38 22.50 0.21 0.37 16 4 C -0.03 -0.74 6.59 23.03 0.15 -0.59 16 5 C -0.16 -2.77 10.90 22.71 0.25 -2.52 16 6 C -0.23 -2.91 10.87 22.06 0.24 -2.67 16 7 C -0.02 -0.22 12.06 67.11 0.81 0.59 16 8 O -0.17 -3.22 7.40 -6.19 -0.05 -3.26 16 9 C 0.55 20.18 7.54 85.06 0.64 20.82 16 10 O -0.60 -26.09 16.12 -4.60 -0.07 -26.17 16 11 N -0.71 -26.85 5.48 -472.17 -2.59 -29.43 16 12 C 0.14 6.26 5.61 86.38 0.48 6.75 16 13 C 0.02 1.15 5.09 29.85 0.15 1.31 16 14 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 16 C 0.01 0.36 5.46 84.65 0.46 0.82 16 17 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 18 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 23 H 0.07 1.54 6.33 -2.39 -0.02 1.53 16 24 H 0.09 1.80 6.11 -2.38 -0.01 1.79 16 25 H 0.16 3.96 7.48 -2.91 -0.02 3.94 16 26 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 27 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 28 H 0.24 0.76 8.06 -2.91 -0.02 0.74 16 29 H 0.41 13.46 6.30 -92.71 -0.58 12.87 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -70.50 296.99 4.23 -66.26 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.52 Total: 14.51 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 4.10 Total: -13.47 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -2.30 Total: -83.98 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.12 Total: -29.43 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.50 4.23 -66.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846958937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.888 kcal (2) G-P(sol) polarization free energy of solvation -70.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds