Wall clock time and date at job start Mon Mar 30 2020 18:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35625 * 120.00253 * 2 1 4 4 C 1.41610 * 119.99979 * 6.63374 * 3 2 1 5 5 C 1.37950 * 126.10470 * 185.98752 * 4 3 2 6 6 C 1.40318 * 106.52634 * 179.84924 * 5 4 3 7 7 C 1.35151 * 107.20457 * 0.41005 * 6 5 4 8 8 O 1.34021 * 109.03624 * 359.73932 * 7 6 5 9 9 C 1.41548 * 120.00381 * 179.97438 * 2 1 3 10 10 O 1.21774 * 120.00896 * 179.97438 * 9 2 1 11 11 N 1.34784 * 119.99578 * 359.97438 * 9 2 1 12 12 C 1.46499 * 119.99799 * 180.02562 * 11 9 2 13 13 H 1.09003 * 109.47321 * 35.00081 * 12 11 9 14 14 C 1.53003 * 109.47088 * 274.99805 * 12 11 9 15 15 C 1.50700 * 109.47050 * 154.99876 * 12 11 9 16 16 H 1.08002 * 120.00115 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00215 * 179.97438 * 15 12 11 18 18 N 1.31508 * 120.00036 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00152 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47272 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47045 * 300.00616 * 19 17 15 22 22 H 1.48503 * 109.46761 * 60.00371 * 19 17 15 23 23 H 1.08996 * 109.47056 * 275.35396 * 1 2 3 24 24 H 1.09001 * 109.46791 * 35.34882 * 1 2 3 25 25 H 1.09000 * 109.47028 * 155.34825 * 1 2 3 26 26 H 1.08000 * 120.00419 * 186.64029 * 3 2 1 27 27 H 1.08003 * 126.73922 * 359.97438 * 5 4 3 28 28 H 1.08001 * 126.39757 * 180.14675 * 6 5 4 29 29 H 1.08003 * 125.48309 * 179.71820 * 7 6 5 30 30 H 0.96995 * 119.99576 * 359.97438 * 11 9 2 31 31 H 1.08999 * 109.46784 * 60.00461 * 14 12 11 32 32 H 1.08996 * 109.47094 * 180.02562 * 14 12 11 33 33 H 1.08997 * 109.46640 * 300.00012 * 14 12 11 34 34 H 0.96994 * 120.00619 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.1745 0.0000 4 6 1.4843 2.3968 0.1417 5 6 2.0271 3.6612 0.0435 6 6 0.9734 4.5650 0.2480 7 6 -0.1427 3.8348 0.4670 8 8 0.1673 2.5325 0.4025 9 6 2.2148 -1.2258 0.0005 10 8 3.4326 -1.2259 0.0001 11 7 1.5409 -2.3931 0.0016 12 6 2.2734 -3.6618 0.0027 13 1 3.1841 -3.5550 0.5921 14 6 2.6373 -4.0419 -1.4340 15 6 1.4094 -4.7401 0.6042 16 1 0.4141 -4.5041 0.9505 17 6 1.8893 -6.0282 0.7114 18 7 3.1011 -6.3158 0.2892 19 14 0.8185 -7.3648 1.4576 20 1 1.5605 -8.6510 1.4575 21 1 0.4664 -6.9958 2.8522 22 1 -0.4228 -7.5099 0.6554 23 1 -0.3633 0.0959 1.0231 24 1 -0.3633 0.8382 -0.5946 25 1 -0.3633 -0.9340 -0.4286 26 1 3.2597 1.1777 -0.1081 27 1 3.0600 3.9073 -0.1542 28 1 1.0422 5.6427 0.2371 29 1 -1.1260 4.2362 0.6629 30 1 0.5709 -2.3930 0.0023 31 1 3.2622 -3.2619 -1.8689 32 1 3.1819 -4.9860 -1.4332 33 1 1.7265 -4.1486 -2.0232 34 1 3.4388 -7.2219 0.3649 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847405215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:08 Heat of formation + Delta-G solvation = -10.489028 kcal Electronic energy + Delta-G solvation = -17547.929042 eV Core-core repulsion = 14640.931100 eV Total energy + Delta-G solvation = -2906.997942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.62363 -39.29356 -35.20288 -34.54261 -33.22440 -32.41988 -30.21852 -28.46547 -26.67712 -25.25005 -23.74928 -21.85840 -21.15257 -19.95497 -18.93418 -17.20162 -16.63884 -16.21888 -15.76221 -15.43724 -14.64129 -14.32688 -14.26043 -13.35838 -13.17834 -12.85076 -12.77117 -12.56340 -12.37901 -12.04105 -11.67507 -11.51650 -11.07928 -10.95504 -10.73805 -10.36528 -10.30600 -10.21839 -9.83588 -9.13034 -9.03129 -8.53918 -8.00727 -7.70278 -6.10875 -4.20348 0.59975 2.11306 2.76310 2.92675 3.26659 3.31764 3.33087 3.98280 4.17838 4.41027 4.76895 4.84351 4.97074 5.10688 5.21296 5.35900 5.57598 5.66624 5.74207 5.78743 5.93501 6.09728 6.20147 6.47433 6.54984 6.85421 6.98721 7.03003 7.16868 7.46777 7.57961 7.71105 7.93204 8.16323 8.66618 8.78418 9.11391 9.47014 10.95164 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.046957 B = 0.004324 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.141507 B = 6473.853788 C = 6871.889703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.142 4.142 3 C -0.039 4.039 4 C 0.018 3.982 5 C -0.186 4.186 6 C -0.215 4.215 7 C -0.043 4.043 8 O -0.159 6.159 9 C 0.535 3.465 10 O -0.558 6.558 11 N -0.700 5.700 12 C 0.262 3.738 13 H 0.050 0.950 14 C -0.146 4.146 15 C -0.535 4.535 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.902 3.098 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.148 0.852 29 H 0.201 0.799 30 H 0.390 0.610 31 H 0.015 0.985 32 H 0.091 0.909 33 H 0.026 0.974 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 17.513 -0.849 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C -0.059 4.059 4 C -0.032 4.032 5 C -0.205 4.205 6 C -0.234 4.234 7 C -0.111 4.111 8 O -0.054 6.054 9 C 0.323 3.677 10 O -0.440 6.440 11 N -0.348 5.348 12 C 0.160 3.840 13 H 0.068 0.932 14 C -0.205 4.205 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.211 1.211 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.176 0.824 27 H 0.170 0.830 28 H 0.166 0.834 29 H 0.218 0.782 30 H 0.224 0.776 31 H 0.034 0.966 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.252 17.023 -0.827 18.153 hybrid contribution -0.956 -0.496 0.370 1.139 sum -7.207 16.527 -0.457 18.036 Atomic orbital electron populations 1.20986 0.90922 1.02884 1.02982 1.21372 0.96911 0.94260 1.01932 1.20502 0.99719 0.87414 0.98244 1.19945 0.81123 0.95390 1.06716 1.22268 1.00741 0.91106 1.06385 1.21716 0.92837 1.00771 1.08052 1.24255 1.00666 0.80594 1.05629 1.84330 1.25511 1.27087 1.68498 1.16798 0.87727 0.84488 0.78693 1.90788 1.13473 1.88143 1.51552 1.46591 1.10119 1.07100 1.71010 1.18771 0.93008 0.78128 0.94070 0.93219 1.22072 0.99154 1.02001 0.97280 1.21186 1.01143 0.93483 1.41548 0.92142 1.24883 0.95160 0.98464 0.95145 1.69888 1.15917 1.20482 1.45804 0.86502 0.80207 0.80663 0.79688 1.21115 1.20163 1.20157 0.90498 0.90544 0.91117 0.82353 0.82961 0.83389 0.78187 0.77620 0.96578 0.89090 0.95480 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.22 36.01 0.30 -1.32 16 2 C -0.14 -2.34 5.89 -104.30 -0.61 -2.95 16 3 C -0.04 -0.58 9.38 -39.23 -0.37 -0.95 16 4 C 0.02 0.23 6.58 -38.40 -0.25 -0.02 16 5 C -0.19 -2.08 10.90 -38.91 -0.42 -2.51 16 6 C -0.21 -2.03 10.87 -39.90 -0.43 -2.46 16 7 C -0.04 -0.39 12.06 29.63 0.36 -0.03 16 8 O -0.16 -1.91 7.41 4.69 0.03 -1.88 16 9 C 0.54 11.26 7.51 -14.99 -0.11 11.15 16 10 O -0.56 -13.73 15.78 5.12 0.08 -13.65 16 11 N -0.70 -15.17 4.99 -57.85 -0.29 -15.46 16 12 C 0.26 6.83 2.56 -69.08 -0.18 6.65 16 13 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 14 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 15 C -0.54 -14.39 8.73 -34.44 -0.30 -14.69 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 18 N -0.88 -25.11 11.32 55.43 0.63 -24.48 16 19 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 24 H 0.08 0.94 6.14 -51.93 -0.32 0.62 16 25 H 0.07 0.90 6.33 -51.93 -0.33 0.58 16 26 H 0.16 2.37 7.48 -52.49 -0.39 1.98 16 27 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.39 7.34 6.37 -40.82 -0.26 7.08 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -31.56 292.19 -6.03 -37.59 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.08 Total: 6.53 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.78 Total: -8.79 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.34 Total: -39.94 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.12 Total: -15.53 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.56 -6.03 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847405215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.100 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds