Wall clock time and date at job start Mon Mar 30 2020 18:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35625 * 120.00253 * 2 1 4 4 C 1.41610 * 119.99979 * 6.63374 * 3 2 1 5 5 C 1.37950 * 126.10470 * 185.98752 * 4 3 2 6 6 C 1.40318 * 106.52634 * 179.84924 * 5 4 3 7 7 C 1.35151 * 107.20457 * 0.41005 * 6 5 4 8 8 O 1.34021 * 109.03624 * 359.73932 * 7 6 5 9 9 C 1.41548 * 120.00381 * 179.97438 * 2 1 3 10 10 O 1.21774 * 120.00896 * 179.97438 * 9 2 1 11 11 N 1.34784 * 119.99578 * 359.97438 * 9 2 1 12 12 C 1.46499 * 119.99799 * 180.02562 * 11 9 2 13 13 H 1.09003 * 109.47321 * 35.00081 * 12 11 9 14 14 C 1.53003 * 109.47088 * 274.99805 * 12 11 9 15 15 C 1.50700 * 109.47050 * 154.99876 * 12 11 9 16 16 H 1.08002 * 120.00115 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00215 * 179.97438 * 15 12 11 18 18 N 1.31508 * 120.00036 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00152 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47272 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47045 * 300.00616 * 19 17 15 22 22 H 1.48503 * 109.46761 * 60.00371 * 19 17 15 23 23 H 1.08996 * 109.47056 * 275.35396 * 1 2 3 24 24 H 1.09001 * 109.46791 * 35.34882 * 1 2 3 25 25 H 1.09000 * 109.47028 * 155.34825 * 1 2 3 26 26 H 1.08000 * 120.00419 * 186.64029 * 3 2 1 27 27 H 1.08003 * 126.73922 * 359.97438 * 5 4 3 28 28 H 1.08001 * 126.39757 * 180.14675 * 6 5 4 29 29 H 1.08003 * 125.48309 * 179.71820 * 7 6 5 30 30 H 0.96995 * 119.99576 * 359.97438 * 11 9 2 31 31 H 1.08999 * 109.46784 * 60.00461 * 14 12 11 32 32 H 1.08996 * 109.47094 * 180.02562 * 14 12 11 33 33 H 1.08997 * 109.46640 * 300.00012 * 14 12 11 34 34 H 0.96994 * 120.00619 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.1745 0.0000 4 6 1.4843 2.3968 0.1417 5 6 2.0271 3.6612 0.0435 6 6 0.9734 4.5650 0.2480 7 6 -0.1427 3.8348 0.4670 8 8 0.1673 2.5325 0.4025 9 6 2.2148 -1.2258 0.0005 10 8 3.4326 -1.2259 0.0001 11 7 1.5409 -2.3931 0.0016 12 6 2.2734 -3.6618 0.0027 13 1 3.1841 -3.5550 0.5921 14 6 2.6373 -4.0419 -1.4340 15 6 1.4094 -4.7401 0.6042 16 1 0.4141 -4.5041 0.9505 17 6 1.8893 -6.0282 0.7114 18 7 3.1011 -6.3158 0.2892 19 14 0.8185 -7.3648 1.4576 20 1 1.5605 -8.6510 1.4575 21 1 0.4664 -6.9958 2.8522 22 1 -0.4228 -7.5099 0.6554 23 1 -0.3633 0.0959 1.0231 24 1 -0.3633 0.8382 -0.5946 25 1 -0.3633 -0.9340 -0.4286 26 1 3.2597 1.1777 -0.1081 27 1 3.0600 3.9073 -0.1542 28 1 1.0422 5.6427 0.2371 29 1 -1.1260 4.2362 0.6629 30 1 0.5709 -2.3930 0.0023 31 1 3.2622 -3.2619 -1.8689 32 1 3.1819 -4.9860 -1.4332 33 1 1.7265 -4.1486 -2.0232 34 1 3.4388 -7.2219 0.3649 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847405215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:07 Heat of formation + Delta-G solvation = -31.032642 kcal Electronic energy + Delta-G solvation = -17548.819880 eV Core-core repulsion = 14640.931100 eV Total energy + Delta-G solvation = -2907.888780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.47803 -40.93402 -36.92730 -36.02981 -34.39547 -34.02433 -31.60429 -30.03464 -27.72015 -27.35777 -25.15303 -22.75757 -22.60419 -21.38647 -20.44140 -18.69307 -17.69532 -17.48352 -17.24556 -17.06096 -16.28201 -15.94939 -15.50394 -15.03182 -14.46145 -14.02950 -13.98138 -13.70851 -13.58367 -13.43910 -13.22706 -12.96991 -12.87601 -12.73904 -12.61011 -12.26840 -12.14372 -11.40649 -11.13277 -10.84597 -10.68120 -10.59465 -9.81061 -8.77941 -8.17917 -6.36158 -0.52280 1.22866 1.44897 1.47527 1.55387 1.78698 2.09185 2.35991 2.48669 2.70615 3.12310 3.84337 3.94814 4.04980 4.16843 4.18585 4.54556 4.70200 4.76701 4.78488 4.90643 4.94686 5.01198 5.07302 5.10454 5.21449 5.38243 5.48434 5.58691 5.61809 5.68293 5.90214 6.08079 6.16655 6.70620 6.91865 7.30312 7.49601 8.88533 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.046957 B = 0.004324 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.141507 B = 6473.853788 C = 6871.889703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.184 4.184 3 C -0.004 4.004 4 C -0.030 4.030 5 C -0.167 4.167 6 C -0.228 4.228 7 C -0.020 4.020 8 O -0.169 6.169 9 C 0.536 3.464 10 O -0.607 6.607 11 N -0.699 5.699 12 C 0.268 3.732 13 H -0.001 1.001 14 C -0.133 4.133 15 C -0.551 4.551 16 H 0.073 0.927 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.975 3.025 20 H -0.285 1.285 21 H -0.270 1.270 22 H -0.263 1.263 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.149 0.851 27 H 0.166 0.834 28 H 0.178 0.822 29 H 0.244 0.756 30 H 0.404 0.596 31 H 0.011 0.989 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 19.617 -0.476 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.187 4.187 3 C -0.024 4.024 4 C -0.078 4.078 5 C -0.186 4.186 6 C -0.247 4.247 7 C -0.088 4.088 8 O -0.065 6.065 9 C 0.327 3.673 10 O -0.492 6.492 11 N -0.348 5.348 12 C 0.164 3.836 13 H 0.017 0.983 14 C -0.192 4.192 15 C -0.589 4.589 16 H 0.091 0.909 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.799 3.201 20 H -0.210 1.210 21 H -0.196 1.196 22 H -0.188 1.188 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.167 0.833 27 H 0.184 0.816 28 H 0.195 0.805 29 H 0.260 0.740 30 H 0.241 0.759 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.879 19.148 -0.460 21.111 hybrid contribution -0.108 -0.825 0.263 0.873 sum -8.987 18.322 -0.197 20.409 Atomic orbital electron populations 1.20882 0.88486 1.03357 1.03535 1.21094 0.98417 0.92178 1.07036 1.20542 0.99483 0.88162 0.94209 1.19694 0.82107 0.95022 1.11021 1.22701 1.01987 0.90838 1.03103 1.22130 0.92131 1.02168 1.08227 1.25257 1.02369 0.79412 1.01788 1.84316 1.24848 1.28717 1.68632 1.17431 0.87300 0.85592 0.76975 1.90747 1.15691 1.88854 1.53948 1.46321 1.10692 1.06078 1.71665 1.18391 0.91651 0.80118 0.93417 0.98317 1.21894 0.99320 1.00632 0.97330 1.21514 1.01679 0.93910 1.41782 0.90903 1.25826 0.96398 1.00924 0.95387 1.70043 1.17722 1.21033 1.46769 0.85357 0.78551 0.77236 0.78949 1.21039 1.19557 1.18751 0.89984 0.89340 0.91104 0.83340 0.81615 0.80501 0.73976 0.75878 0.96954 0.91253 0.94057 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 8.22 71.24 0.59 -2.15 16 2 C -0.18 -6.17 5.89 -19.65 -0.12 -6.29 16 3 C 0.00 -0.12 9.38 22.50 0.21 0.10 16 4 C -0.03 -0.73 6.58 23.03 0.15 -0.58 16 5 C -0.17 -3.29 10.90 22.71 0.25 -3.04 16 6 C -0.23 -3.33 10.87 22.06 0.24 -3.09 16 7 C -0.02 -0.27 12.06 67.11 0.81 0.54 16 8 O -0.17 -3.60 7.41 -6.14 -0.05 -3.64 16 9 C 0.54 23.55 7.51 85.06 0.64 24.19 16 10 O -0.61 -31.74 15.78 -4.58 -0.07 -31.81 16 11 N -0.70 -31.26 4.99 -455.11 -2.27 -33.53 16 12 C 0.27 14.54 2.56 44.25 0.11 14.66 16 13 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 14 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 15 C -0.55 -30.03 8.73 25.60 0.22 -29.80 16 16 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 17 C 0.01 0.81 5.30 84.66 0.45 1.26 16 18 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 19 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 24 H 0.09 2.02 6.14 -2.39 -0.01 2.01 16 25 H 0.07 1.76 6.33 -2.39 -0.02 1.74 16 26 H 0.15 4.62 7.48 -2.91 -0.02 4.60 16 27 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.24 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.40 15.40 6.37 -92.71 -0.59 14.81 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -71.17 292.19 4.62 -66.55 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.52 Total: 21.82 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 4.22 Total: -10.57 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.03 Total: -86.85 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.12 Total: -35.46 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -71.17 4.62 -66.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847405215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.515 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds