Wall clock time and date at job start Mon Mar 30 2020 18:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21281 * 119.99723 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00182 * 180.02562 * 13 12 2 16 16 H 1.09000 * 115.55124 * 34.40952 * 15 13 12 17 17 C 1.53005 * 117.49563 * 248.74879 * 15 13 12 18 18 C 1.52995 * 117.50209 * 180.08706 * 15 13 12 19 19 H 1.09002 * 117.49797 * 359.97438 * 18 15 13 20 20 C 1.50696 * 117.50204 * 214.97842 * 18 15 13 21 21 C 1.34514 * 125.79382 * 119.99536 * 20 18 15 22 22 C 1.41383 * 106.84280 * 180.02562 * 21 20 18 23 23 C 1.34517 * 106.83948 * 0.02562 * 22 21 20 24 24 O 1.34301 * 108.41907 * 359.73745 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 30 30 H 1.08994 * 117.50036 * 359.97438 * 17 15 13 31 31 H 1.09002 * 117.49605 * 144.99573 * 17 15 13 32 32 H 1.07999 * 126.57330 * 359.97033 * 21 20 18 33 33 H 1.07996 * 126.58190 * 180.02562 * 22 21 20 34 34 H 1.08000 * 125.78680 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1586 -2.4115 15 6 2.6490 -0.7288 -3.5877 16 1 2.3500 -1.7727 -3.6826 17 6 4.0321 -0.3395 -4.1134 18 6 2.7750 0.0897 -4.8741 19 1 2.4944 1.1421 -4.8305 20 6 2.4766 -0.6090 -6.1755 21 6 1.5202 -0.2600 -7.0546 22 6 1.5920 -1.1808 -8.1251 23 6 2.5877 -2.0377 -7.8359 24 8 3.1235 -1.6833 -6.6565 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 2.2490 -1.6317 -1.1525 30 1 4.5788 0.4308 -3.5695 31 1 4.6430 -1.1273 -4.5543 32 1 0.8293 0.5647 -6.9602 33 1 0.9674 -1.1937 -9.0060 34 1 2.9057 -2.8670 -8.4503 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863861993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:22 Heat of formation + Delta-G solvation = 5.277726 kcal Electronic energy + Delta-G solvation = -17456.620624 eV Core-core repulsion = 14550.306380 eV Total energy + Delta-G solvation = -2906.314244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.68686 -39.47708 -36.61145 -34.85250 -33.09549 -32.38207 -30.14389 -29.39975 -25.25981 -24.38490 -23.21950 -21.78489 -20.87812 -20.09944 -19.54645 -17.75253 -17.28797 -16.19736 -15.98815 -15.57175 -15.02561 -14.65320 -14.14089 -13.52547 -13.20523 -12.93951 -12.90587 -12.69952 -12.45588 -12.20670 -11.94293 -11.83997 -11.30096 -11.00915 -10.79689 -10.50876 -10.19442 -10.00445 -9.71843 -9.24392 -9.22207 -8.76656 -8.43426 -8.17655 -6.21539 -4.24240 1.54932 2.45799 2.81523 3.00321 3.23242 3.35132 3.39566 3.81360 3.95230 4.31161 4.50730 4.68445 4.83329 4.93000 5.00464 5.13301 5.23893 5.39157 5.59983 5.70878 5.80422 5.92693 6.01523 6.01854 6.30566 6.37422 6.37772 6.55317 6.84532 7.03407 7.18376 7.27148 7.50552 8.13879 8.51597 8.74963 8.90830 9.39173 10.90644 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.049486 B = 0.004291 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.683290 B = 6523.901789 C = 6716.407512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.694 5.694 13 C 0.533 3.467 14 O -0.556 6.556 15 C -0.169 4.169 16 H 0.124 0.876 17 C -0.138 4.138 18 C -0.056 4.056 19 H 0.148 0.852 20 C 0.025 3.975 21 C -0.205 4.205 22 C -0.213 4.213 23 C -0.047 4.047 24 O -0.175 6.175 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.397 0.603 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -1.996 -19.951 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.341 5.341 13 C 0.318 3.682 14 O -0.436 6.436 15 C -0.190 4.190 16 H 0.142 0.858 17 C -0.176 4.176 18 C -0.074 4.074 19 H 0.165 0.835 20 C -0.025 4.025 21 C -0.224 4.224 22 C -0.232 4.232 23 C -0.114 4.114 24 O -0.072 6.072 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.230 0.770 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.850 -1.308 -19.584 19.646 hybrid contribution -0.795 0.168 0.077 0.816 sum 0.056 -1.141 -19.507 19.541 Atomic orbital electron populations 1.22453 0.99258 1.00904 0.99338 1.19131 0.90177 0.94693 0.82744 0.93324 1.21043 1.33308 1.14460 0.88523 0.90152 1.24832 0.95490 0.96722 0.95507 1.69870 1.44904 1.40102 0.98047 0.86868 0.80539 0.83586 0.77446 1.20290 1.22131 1.18664 1.46111 1.64576 1.13958 1.09502 1.19414 0.78173 0.86806 0.83817 1.90648 1.51744 1.16033 1.85147 1.22460 1.02594 1.00711 0.93273 0.85841 1.23069 0.89515 1.03717 1.01259 1.20518 1.03668 0.98989 0.84247 0.83494 1.21454 0.95272 0.89250 0.96512 1.21557 1.02045 1.03561 0.95284 1.21833 1.01888 0.97934 1.01534 1.23991 0.97883 1.02397 0.87173 1.83978 1.51516 1.39702 1.31983 0.92785 0.94511 0.93419 0.92272 0.76965 0.87163 0.87357 0.83332 0.83501 0.78160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.96 37.16 0.33 -3.30 16 2 C 0.24 5.65 2.15 -69.08 -0.15 5.50 16 3 H 0.05 1.28 6.64 -51.93 -0.34 0.94 16 4 C -0.54 -14.49 9.31 -34.44 -0.32 -14.81 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 8 Si 0.89 21.78 24.37 -169.99 -4.14 17.64 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.69 -13.85 5.07 -54.93 -0.28 -14.13 16 13 C 0.53 10.03 7.58 -10.99 -0.08 9.95 16 14 O -0.56 -12.33 15.92 5.56 0.09 -12.24 16 15 C -0.17 -2.40 5.89 -91.77 -0.54 -2.94 16 16 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 17 C -0.14 -1.70 9.87 -26.69 -0.26 -1.96 16 18 C -0.06 -0.73 5.75 -91.74 -0.53 -1.26 16 19 H 0.15 2.01 7.67 -51.93 -0.40 1.62 16 20 C 0.03 0.32 6.80 -35.63 -0.24 0.07 16 21 C -0.21 -2.42 10.81 -39.70 -0.43 -2.85 16 22 C -0.21 -2.13 10.91 -39.70 -0.43 -2.56 16 23 C -0.05 -0.44 12.09 29.42 0.36 -0.09 16 24 O -0.18 -2.10 10.36 5.71 0.06 -2.04 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 29 H 0.40 6.99 8.54 -40.82 -0.35 6.64 16 30 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.11 1.16 7.96 -51.93 -0.41 0.74 16 32 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 292.87 15.07 4.41 4.41 Total: -1.00 -31.96 292.87 -5.72 -37.68 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.23 Total: 6.50 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.40 Total: -12.16 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.50 Total: -39.79 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.15 Total: -14.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.96 -5.72 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863861993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.959 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds