Wall clock time and date at job start Mon Mar 30 2020 18:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47315 * 2 1 4 4 O 1.42905 * 109.47356 * 120.00322 * 2 1 3 5 5 N 1.41594 * 114.00310 * 154.99898 * 4 2 1 6 6 C 1.34775 * 119.99951 * 179.97438 * 5 4 2 7 7 O 1.21607 * 119.99882 * 0.02562 * 6 5 4 8 8 C 1.47437 * 120.00283 * 179.97438 * 6 5 4 9 9 C 1.39227 * 120.27694 * 355.71167 * 8 6 5 10 10 C 1.38223 * 120.09019 * 180.27968 * 9 8 6 11 11 C 1.38832 * 120.67094 * 359.69406 * 10 9 8 12 12 C 1.37596 * 120.57508 * 0.02562 * 11 10 9 13 13 C 1.40709 * 119.87781 * 0.02562 * 12 11 10 14 14 C 1.40885 * 120.32254 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99729 * 216.32445 * 14 13 12 16 16 C 1.40272 * 120.00475 * 36.32620 * 14 13 12 17 17 N 1.30628 * 120.00173 * 190.50975 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 10.50597 * 16 14 13 19 19 H 1.48495 * 109.47236 * 267.22657 * 18 16 14 20 20 H 1.48498 * 109.46909 * 27.22603 * 18 16 14 21 21 H 1.48499 * 109.47024 * 147.22254 * 18 16 14 22 22 H 1.08999 * 109.47039 * 299.99902 * 1 2 3 23 23 H 1.08999 * 109.46958 * 59.99983 * 1 2 3 24 24 H 1.09001 * 109.47114 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47209 * 239.99459 * 2 1 3 26 26 H 1.08999 * 109.46987 * 60.00066 * 3 2 1 27 27 H 1.09000 * 109.46767 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46606 * 299.99814 * 3 2 1 29 29 H 0.97001 * 120.00315 * 359.97438 * 5 4 2 30 30 H 1.07996 * 119.95739 * 359.97438 * 9 8 6 31 31 H 1.07991 * 119.66911 * 179.72266 * 10 9 8 32 32 H 1.08003 * 119.70923 * 180.02562 * 11 10 9 33 33 H 1.07993 * 120.05782 * 180.02562 * 12 11 10 34 34 H 0.96995 * 120.00424 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 7 3.3036 -1.2233 1.0252 6 6 3.8710 -1.8850 2.0532 7 8 3.2686 -2.0105 3.1020 8 6 5.2216 -2.4577 1.9057 9 6 5.8800 -2.3965 0.6805 10 6 7.1438 -2.9398 0.5450 11 6 7.7737 -3.5452 1.6239 12 6 7.1506 -3.6160 2.8487 13 6 5.8636 -3.0715 3.0128 14 6 5.2167 -3.1392 4.2625 15 1 4.1487 -3.2926 4.3101 16 6 5.9596 -3.0074 5.4450 17 7 5.4052 -3.2722 6.5978 18 14 7.7420 -2.4531 5.3713 19 1 8.6283 -3.6430 5.3103 20 1 7.9509 -1.6177 4.1615 21 1 8.0636 -1.6579 6.5835 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 3.7840 -1.1235 0.1885 30 1 5.4008 -1.9282 -0.1665 31 1 7.6465 -2.8924 -0.4096 32 1 8.7615 -3.9644 1.5008 33 1 7.6485 -4.0885 3.6824 34 1 5.9188 -3.1807 7.4155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868658374.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:25 Heat of formation + Delta-G solvation = -35.826618 kcal Electronic energy + Delta-G solvation = -17936.650352 eV Core-core repulsion = 15028.553689 eV Total energy + Delta-G solvation = -2908.096662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.75649 -39.19198 -38.20770 -35.63278 -34.52818 -32.71089 -32.30956 -30.71978 -28.17884 -27.20919 -24.27156 -23.04029 -22.61945 -21.25171 -19.64129 -18.89524 -18.23215 -17.17967 -16.42082 -16.16818 -15.82465 -15.58737 -15.34016 -15.27119 -14.64775 -14.47932 -14.10319 -13.83076 -13.37910 -13.24364 -13.15598 -12.82751 -12.69292 -12.53795 -12.21795 -12.07231 -11.97354 -11.75244 -11.61290 -11.08654 -10.43590 -9.86549 -9.52933 -9.43450 -8.83377 -6.51053 0.30593 0.83265 1.06850 1.24738 1.39084 1.48127 2.10614 2.22189 2.69743 3.50817 3.59235 3.85185 3.98138 4.13189 4.15182 4.21102 4.44163 4.67834 4.69286 4.80642 4.82022 4.84227 4.89473 4.98469 5.18896 5.25495 5.28159 5.41971 5.65778 5.83599 5.93728 5.96196 6.26084 6.47541 6.57396 6.75006 6.82743 7.62674 8.21418 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025156 B = 0.006756 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.807272 B = 4143.669175 C = 4857.222499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 C -0.173 4.173 4 O -0.178 6.178 5 N -0.591 5.591 6 C 0.564 3.436 7 O -0.571 6.571 8 C -0.257 4.257 9 C -0.039 4.039 10 C -0.226 4.226 11 C -0.058 4.058 12 C -0.242 4.242 13 C 0.102 3.898 14 C -0.453 4.453 15 H 0.068 0.932 16 C 0.034 3.966 17 N -0.848 5.848 18 Si 0.970 3.030 19 H -0.243 1.243 20 H -0.246 1.246 21 H -0.280 1.280 22 H 0.055 0.945 23 H 0.110 0.890 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.416 0.584 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 6.450 -16.464 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 C -0.230 4.230 4 O -0.183 6.183 5 N -0.297 5.297 6 C 0.358 3.642 7 O -0.450 6.450 8 C -0.263 4.263 9 C -0.058 4.058 10 C -0.244 4.244 11 C -0.076 4.076 12 C -0.261 4.261 13 C 0.098 3.902 14 C -0.481 4.481 15 H 0.086 0.914 16 C -0.180 4.180 17 N -0.474 5.474 18 Si 0.792 3.208 19 H -0.167 1.167 20 H -0.170 1.170 21 H -0.207 1.207 22 H 0.074 0.926 23 H 0.129 0.871 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.260 0.740 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.123 0.877 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.533 6.331 -15.260 16.530 hybrid contribution 0.102 0.224 0.360 0.436 sum 0.636 6.555 -14.901 16.291 Atomic orbital electron populations 1.21852 0.90863 1.03163 1.04067 1.22994 0.96795 0.93526 0.88413 1.22337 1.01565 0.95570 1.03549 1.90612 1.17065 1.73808 1.36855 1.47390 1.07845 1.57545 1.16959 1.18733 0.86276 0.77199 0.82011 1.90744 1.64683 1.60356 1.29185 1.19422 0.95039 1.13735 0.98065 1.21236 0.94839 0.95504 0.94196 1.20969 0.96328 1.07347 0.99779 1.21304 0.99114 0.95170 0.91989 1.21241 0.97404 1.08531 0.98926 1.17756 0.91938 0.88066 0.92451 1.19989 0.97265 1.40486 0.90378 0.91371 1.27201 1.04876 0.91909 0.94058 1.69629 1.41199 1.36350 1.00234 0.85449 0.76420 0.80286 0.78685 1.16748 1.16962 1.20709 0.92553 0.87118 0.92311 0.88773 0.93053 0.92710 0.88265 0.73965 0.84097 0.83279 0.84128 0.87715 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.56 71.98 0.69 -2.02 16 2 C 0.04 0.93 3.47 30.59 0.11 1.04 16 3 C -0.17 -3.42 9.56 71.98 0.69 -2.73 16 4 O -0.18 -6.63 10.75 -21.42 -0.23 -6.86 16 5 N -0.59 -22.09 6.32 -175.88 -1.11 -23.21 16 6 C 0.56 27.91 7.87 86.67 0.68 28.59 16 7 O -0.57 -35.21 13.94 13.30 0.19 -35.03 16 8 C -0.26 -12.01 5.92 -19.70 -0.12 -12.12 16 9 C -0.04 -1.35 9.52 22.50 0.21 -1.14 16 10 C -0.23 -7.09 10.03 22.41 0.22 -6.86 16 11 C -0.06 -2.03 10.01 22.26 0.22 -1.81 16 12 C -0.24 -10.87 7.00 22.72 0.16 -10.71 16 13 C 0.10 5.37 5.03 -21.11 -0.11 5.26 16 14 C -0.45 -27.72 8.31 23.41 0.19 -27.53 16 15 H 0.07 4.83 5.96 -2.91 -0.02 4.81 16 16 C 0.03 1.93 5.47 85.37 0.47 2.39 16 17 N -0.85 -50.23 13.92 21.88 0.30 -49.93 16 18 Si 0.97 43.53 24.52 68.60 1.68 45.22 16 19 H -0.24 -9.79 6.76 99.48 0.67 -9.12 16 20 H -0.25 -11.00 6.73 99.48 0.67 -10.33 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.09 1.72 7.94 -2.38 -0.02 1.70 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.42 11.38 6.48 -92.71 -0.60 10.78 16 30 H 0.14 3.47 6.42 -2.91 -0.02 3.46 16 31 H 0.15 3.36 8.06 -2.92 -0.02 3.34 16 32 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.11 4.67 5.01 -2.91 -0.01 4.65 16 34 H 0.29 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -78.46 286.88 4.70 -73.76 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.45 Total: 23.68 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 3.43 Total: -27.64 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -0.81 Total: -73.13 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.04 Total: -41.89 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.68 Total: 45.22 kcal Total: -78.46 4.70 -73.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868658374.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.929 kcal (2) G-P(sol) polarization free energy of solvation -78.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds