Wall clock time and date at job start Mon Mar 30 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35992 * 116.99410 * 2 1 4 4 C 1.38297 * 120.22350 * 0.02562 * 3 2 1 5 5 C 1.38847 * 120.54563 * 179.79894 * 4 3 2 6 6 C 1.37737 * 119.96572 * 359.85617 * 5 4 3 7 7 C 1.38986 * 119.64047 * 0.17136 * 6 5 4 8 8 C 1.38248 * 120.61993 * 0.12948 * 7 6 5 9 9 O 1.35993 * 120.16904 * 179.81637 * 8 7 6 10 10 C 1.50628 * 122.84069 * 180.77281 * 6 5 4 11 11 C 1.52782 * 110.86136 * 339.95606 * 10 6 5 12 12 N 1.47232 * 107.88946 * 47.51525 * 11 10 6 13 13 C 1.36939 * 121.34055 * 115.72453 * 12 11 10 14 14 H 1.08002 * 119.99706 * 335.39552 * 13 12 11 15 15 C 1.38813 * 120.00025 * 155.40015 * 13 12 11 16 16 N 1.31608 * 120.00051 * 344.28365 * 15 13 12 17 17 Si 1.86800 * 119.99677 * 164.28527 * 15 13 12 18 18 H 1.48494 * 109.47446 * 89.99797 * 17 15 13 19 19 H 1.48503 * 109.46908 * 209.99722 * 17 15 13 20 20 H 1.48504 * 109.47378 * 329.99612 * 17 15 13 21 21 C 1.46674 * 117.32199 * 295.69954 * 12 11 10 22 22 H 1.09004 * 109.46736 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47186 * 299.99806 * 1 2 3 24 24 H 1.08997 * 109.46975 * 60.00480 * 1 2 3 25 25 H 1.08002 * 119.72891 * 359.78293 * 4 3 2 26 26 H 1.07995 * 119.69382 * 179.87704 * 7 6 5 27 27 H 0.96706 * 113.99904 * 269.72722 * 9 8 7 28 28 H 1.08994 * 109.20086 * 219.59655 * 10 6 5 29 29 H 1.08999 * 109.15643 * 100.28367 * 10 6 5 30 30 H 1.08997 * 109.77562 * 287.92034 * 11 10 6 31 31 H 1.09003 * 109.77700 * 167.11265 * 11 10 6 32 32 H 0.97001 * 120.00399 * 179.97438 * 16 15 13 33 33 H 1.08996 * 109.43375 * 284.30261 * 21 12 11 34 34 H 1.08999 * 109.40068 * 164.41038 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2975 2.3745 0.0005 5 6 1.9208 3.6152 0.0047 6 6 3.2958 3.6943 0.0114 7 6 4.0515 2.5278 0.0103 8 6 3.4358 1.2900 -0.0002 9 8 4.1842 0.1545 -0.0049 10 6 4.0386 5.0046 0.0333 11 6 3.1420 6.1462 -0.4432 12 7 1.8536 6.0333 0.2604 13 6 1.4296 7.0026 1.1299 14 1 2.1498 7.6418 1.6190 15 6 0.0742 7.1635 1.3828 16 7 -0.8143 6.6174 0.5800 17 14 -0.4885 8.1551 2.8624 18 1 -0.6456 9.5795 2.4731 19 1 -1.7899 7.6277 3.3458 20 1 0.5224 8.0464 3.9448 21 6 1.0422 4.8413 -0.0078 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 0.2190 2.3169 -0.0026 26 1 5.1297 2.5889 0.0135 27 1 4.4003 -0.1704 -0.8898 28 1 4.9079 4.9348 -0.6203 29 1 4.3708 5.2104 1.0508 30 1 2.9832 6.0662 -1.5185 31 1 3.6077 7.1034 -0.2086 32 1 -1.7614 6.7294 0.7569 33 1 0.5680 4.9376 -0.9844 34 1 0.2747 4.7454 0.7602 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887103703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:45 Heat of formation + Delta-G solvation = -34.002110 kcal Electronic energy + Delta-G solvation = -18285.722948 eV Core-core repulsion = 15377.705402 eV Total energy + Delta-G solvation = -2908.017546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15197 -37.96108 -37.15222 -34.85860 -32.48615 -31.12343 -29.50261 -28.13975 -27.17026 -25.21069 -22.92189 -22.03344 -21.71038 -19.41212 -18.04712 -17.26358 -16.27155 -15.91263 -15.60576 -14.95176 -14.75586 -14.03758 -13.84769 -13.83202 -13.39636 -13.12985 -12.73756 -12.18314 -11.95896 -11.72586 -11.47193 -11.41084 -10.99680 -10.77942 -10.70566 -10.42667 -10.19898 -9.94657 -9.91179 -9.82272 -8.68529 -8.16607 -7.46550 -6.80818 -5.86291 -3.25534 1.66011 1.80340 3.34883 3.41971 3.44735 3.48060 4.02013 4.44573 4.51507 5.12296 5.25426 5.29982 5.31204 5.39486 5.47751 5.58178 5.67328 5.80102 5.88489 6.06365 6.12635 6.28310 6.37254 6.54005 6.65177 6.81303 6.82617 7.07041 7.09642 7.23096 7.48040 7.56605 7.73256 8.02226 8.32185 9.12869 9.75516 10.33410 11.24463 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.006844 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.282657 B = 4090.132902 C = 4825.276041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.093 3.907 4 C -0.197 4.197 5 C -0.043 4.043 6 C -0.087 4.087 7 C -0.113 4.113 8 C 0.052 3.948 9 O -0.490 6.490 10 C -0.093 4.093 11 C 0.142 3.858 12 N -0.593 5.593 13 C -0.248 4.248 14 H 0.070 0.930 15 C 0.000 4.000 16 N -0.909 5.909 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.205 3.795 22 H 0.095 0.905 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.129 0.871 26 H 0.126 0.874 27 H 0.377 0.623 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.255 0.745 33 H 0.043 0.957 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -9.858 -3.447 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.048 3.952 4 C -0.217 4.217 5 C -0.044 4.044 6 C -0.088 4.088 7 C -0.132 4.132 8 C 0.007 3.993 9 O -0.298 6.298 10 C -0.132 4.132 11 C 0.015 3.985 12 N -0.316 5.316 13 C -0.377 4.377 14 H 0.088 0.912 15 C -0.198 4.198 16 N -0.554 5.554 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.205 1.205 21 C 0.079 3.921 22 H 0.113 0.887 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.230 0.770 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.058 -9.946 -2.794 11.503 hybrid contribution -0.643 0.421 0.247 0.807 sum 4.415 -9.526 -2.547 10.804 Atomic orbital electron populations 1.23023 0.78919 1.03293 1.01661 1.86071 1.20902 1.26720 1.89195 1.19300 0.91606 0.84588 0.99718 1.21122 1.00075 0.91298 1.09168 1.20891 0.94252 0.96423 0.92872 1.19409 0.92900 0.94500 1.01975 1.21244 0.99868 0.90676 1.01384 1.17503 0.85990 0.86209 1.09617 1.84894 1.71762 1.40537 1.32593 1.20932 0.97566 0.93243 1.01496 1.20920 0.87424 0.95531 0.94591 1.43989 1.18286 1.19626 1.49665 1.19177 0.90634 1.11197 1.16684 0.91197 1.25006 0.96180 0.99662 0.98934 1.69993 1.00636 1.48526 1.36277 0.86252 0.77956 0.79635 0.82706 1.21313 1.21526 1.20454 1.19779 0.91056 0.80426 1.00806 0.88701 0.92596 0.92692 0.85309 0.85592 0.76996 0.92121 0.91187 0.95492 0.91970 0.93521 0.93948 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.82 101.05 0.99 1.31 16 2 O -0.32 -5.06 10.30 -33.94 -0.35 -5.41 16 3 C 0.09 1.64 6.69 -39.21 -0.26 1.38 16 4 C -0.20 -3.66 8.63 -39.33 -0.34 -3.99 16 5 C -0.04 -0.88 5.82 -104.51 -0.61 -1.49 16 6 C -0.09 -1.66 5.77 -104.56 -0.60 -2.26 16 7 C -0.11 -1.91 9.52 -39.30 -0.37 -2.28 16 8 C 0.05 0.88 6.71 -39.23 -0.26 0.62 16 9 O -0.49 -7.42 13.30 -33.94 -0.45 -7.87 16 10 C -0.09 -1.67 5.86 -28.03 -0.16 -1.83 16 11 C 0.14 2.92 6.52 -3.75 -0.02 2.89 16 12 N -0.59 -14.80 2.97 -173.93 -0.52 -15.32 16 13 C -0.25 -6.71 9.70 -15.06 -0.15 -6.85 16 14 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 15 C 0.00 0.00 4.99 -17.43 -0.09 -0.08 16 16 N -0.91 -25.75 11.10 55.49 0.62 -25.14 16 17 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.20 4.90 4.85 -5.03 -0.02 4.87 16 22 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 24 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 25 H 0.13 2.21 6.28 -52.49 -0.33 1.88 16 26 H 0.13 1.82 8.05 -52.49 -0.42 1.39 16 27 H 0.38 3.84 9.07 45.56 0.41 4.25 16 28 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.22 7.96 -51.93 -0.41 0.80 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 2.57 6.34 -51.93 -0.33 2.25 16 LS Contribution 283.33 15.07 4.27 4.27 Total: -1.00 -31.14 283.33 -6.90 -38.05 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -3.54 Total: 2.70 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.91 Total: -7.71 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.10 Total: -40.45 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.80 Total: -13.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.14 -6.90 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887103703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.046 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds