Wall clock time and date at job start Mon Mar 30 2020 18:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46494 * 109.46869 * 2 1 4 4 C 1.36812 * 120.00646 * 264.68497 * 3 2 1 5 5 H 1.07994 * 120.00484 * 145.35564 * 4 3 2 6 6 C 1.39050 * 119.99712 * 325.36454 * 4 3 2 7 7 N 1.31372 * 120.00048 * 338.61288 * 6 4 3 8 8 Si 1.86803 * 120.00024 * 158.61744 * 6 4 3 9 9 H 1.48502 * 109.46996 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47028 * 119.99752 * 8 6 4 11 11 H 1.48499 * 109.46765 * 239.99708 * 8 6 4 12 12 C 1.34782 * 119.99874 * 84.69040 * 3 2 1 13 13 O 1.21796 * 120.00164 * 180.02562 * 12 3 2 14 14 C 1.41648 * 119.99959 * 0.26668 * 12 3 2 15 15 C 1.35178 * 120.00034 * 179.72479 * 14 12 3 16 16 C 1.46941 * 119.99844 * 180.02562 * 15 14 12 17 17 C 1.41450 * 126.44459 * 0.03231 * 16 15 14 18 18 N 1.30441 * 108.03715 * 179.97438 * 17 16 15 19 19 N 1.39913 * 108.97914 * 359.97438 * 18 17 16 20 20 C 1.46503 * 125.74392 * 179.97438 * 19 18 17 21 21 C 1.34418 * 108.51722 * 359.73350 * 19 18 17 22 22 H 1.09007 * 109.47021 * 59.99911 * 1 2 3 23 23 H 1.08997 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47097 * 299.99529 * 1 2 3 25 25 H 1.09004 * 109.46770 * 240.00605 * 2 1 3 26 26 H 1.08993 * 109.47249 * 120.00132 * 2 1 3 27 27 H 0.96996 * 120.00069 * 180.02562 * 7 6 4 28 28 H 1.08001 * 119.99913 * 359.73457 * 14 12 3 29 29 H 1.08000 * 119.99888 * 0.02562 * 15 14 12 30 30 H 1.07997 * 125.97957 * 0.02562 * 17 16 15 31 31 H 1.09000 * 109.46977 * 89.98007 * 20 19 18 32 32 H 1.08997 * 109.47208 * 209.97993 * 20 19 18 33 33 H 1.08997 * 109.47105 * 329.98391 * 20 19 18 34 34 H 1.08003 * 126.32660 * 180.28984 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3498 1.9897 -1.1797 5 1 2.1701 3.0464 -1.3114 6 6 2.9181 1.2475 -2.2091 7 7 3.5183 0.1093 -1.9443 8 14 2.8282 1.8689 -3.9684 9 1 2.1042 3.1651 -3.9991 10 1 4.2028 2.0565 -4.4979 11 1 2.1056 0.8788 -4.8067 12 6 2.1411 2.0525 1.1623 13 8 2.5466 3.2010 1.1623 14 6 1.8034 1.4207 2.3842 15 6 1.9318 2.0922 3.5504 16 6 1.5820 1.4365 4.8180 17 6 1.1013 0.1156 4.9762 18 7 0.9088 -0.0944 6.2491 19 7 1.2513 1.0621 6.9580 20 6 1.1746 1.2292 8.4115 21 6 1.6677 1.9924 6.0817 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.9151 -0.4083 -2.6624 28 1 1.4434 0.4024 2.3842 29 1 2.2915 3.1105 3.5504 30 1 0.9255 -0.5949 4.1821 31 1 2.1207 0.9292 8.8621 32 1 0.9754 2.2746 8.6470 33 1 0.3708 0.6081 8.8067 34 1 2.0045 2.9906 6.3199 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:28 Heat of formation + Delta-G solvation = 46.033690 kcal Electronic energy + Delta-G solvation = -17525.888937 eV Core-core repulsion = 14653.634756 eV Total energy + Delta-G solvation = -2872.254182 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.05686 -40.48949 -36.97061 -35.21347 -34.01838 -33.30964 -31.15552 -30.61209 -27.96832 -26.77964 -24.46226 -23.62595 -22.07590 -21.33420 -19.50109 -18.70737 -18.19533 -17.33949 -16.88067 -16.36846 -16.02076 -15.51745 -15.31779 -14.88550 -14.52839 -14.37180 -13.86863 -13.65210 -13.57541 -13.46012 -13.12016 -12.98121 -12.79275 -12.55930 -12.26577 -12.04569 -11.79545 -11.56111 -11.19340 -10.86475 -10.44924 -10.35114 -9.44820 -8.80722 -8.31856 -5.98527 0.14957 1.02126 1.40447 1.42718 1.57345 1.62899 2.03552 2.32470 2.73444 3.22282 3.24152 3.61083 3.93498 4.22198 4.24237 4.36915 4.37941 4.46843 4.58923 4.68116 4.71776 4.74580 4.85766 4.92241 5.08222 5.33241 5.46326 5.51799 5.59532 5.64184 5.69831 6.05881 6.26076 6.62128 6.65984 7.23607 7.53283 8.16577 8.69517 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.048631 B = 0.004519 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.631632 B = 6194.955296 C = 6501.718249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 N -0.447 5.447 4 C -0.341 4.341 5 H 0.063 0.937 6 C 0.002 3.998 7 N -0.886 5.886 8 Si 0.983 3.017 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.262 1.262 12 C 0.471 3.529 13 O -0.649 6.649 14 C -0.227 4.227 15 C 0.019 3.981 16 C -0.248 4.248 17 C 0.065 3.935 18 N -0.331 5.331 19 N -0.368 5.368 20 C 0.089 3.911 21 C 0.095 3.905 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.275 0.725 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.196 0.804 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 -1.938 16.575 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.163 5.163 4 C -0.469 4.469 5 H 0.081 0.919 6 C -0.201 4.201 7 N -0.524 5.524 8 Si 0.807 3.193 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.186 1.186 12 C 0.266 3.734 13 O -0.541 6.541 14 C -0.248 4.248 15 C -0.003 4.003 16 C -0.260 4.260 17 C -0.120 4.120 18 N -0.152 5.152 19 N -0.147 5.147 20 C -0.050 4.050 21 C -0.055 4.055 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.213 0.787 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.112 0.888 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.096 -2.442 17.515 18.706 hybrid contribution 0.520 0.797 -1.714 1.960 sum -5.576 -1.645 15.801 16.837 Atomic orbital electron populations 1.22105 0.95272 1.02446 1.01229 1.21715 0.94087 0.83512 1.03642 1.43733 1.54744 1.12992 1.04863 1.19459 1.40844 0.95217 0.91424 0.91891 1.26134 0.93449 0.96537 1.03950 1.69973 1.32171 1.15898 1.34373 0.85046 0.78204 0.78702 0.77384 1.19612 1.20285 1.18646 1.17829 0.82511 0.87361 0.85724 1.90566 1.54276 1.20895 1.88323 1.21811 1.09097 1.01825 0.92079 1.21454 0.91511 0.97775 0.89574 1.19511 1.17123 0.96257 0.93077 1.24368 0.97071 0.96337 0.94271 1.77045 1.25046 1.07328 1.05785 1.48726 1.48198 1.08936 1.08822 1.22329 1.04966 1.05820 0.71910 1.23648 0.96595 0.96976 0.88303 0.94143 0.89576 0.92867 0.89215 0.91609 0.91550 0.84744 0.86405 0.78745 0.89167 0.86192 0.88753 0.76433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 10.07 71.98 0.73 -4.86 16 2 C 0.09 4.23 5.28 86.38 0.46 4.69 16 3 N -0.45 -24.36 2.55 -645.55 -1.64 -26.01 16 4 C -0.34 -20.26 8.96 84.11 0.75 -19.51 16 5 H 0.06 4.01 7.71 -2.91 -0.02 3.99 16 6 C 0.00 0.10 4.94 84.96 0.42 0.52 16 7 N -0.89 -48.94 11.33 21.68 0.25 -48.69 16 8 Si 0.98 43.27 29.60 68.60 2.03 45.30 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 C 0.47 25.30 7.36 85.08 0.63 25.92 16 13 O -0.65 -39.84 15.94 -4.66 -0.07 -39.91 16 14 C -0.23 -9.36 8.12 22.41 0.18 -9.18 16 15 C 0.02 0.69 9.64 23.85 0.23 0.92 16 16 C -0.25 -7.03 6.08 -20.19 -0.12 -7.15 16 17 C 0.07 1.80 11.39 85.69 0.98 2.78 16 18 N -0.33 -8.81 12.49 -56.17 -0.70 -9.51 16 19 N -0.37 -7.40 3.98 -367.41 -1.46 -8.87 16 20 C 0.09 0.81 11.44 127.77 1.46 2.28 16 21 C 0.10 1.97 11.52 84.32 0.97 2.95 16 22 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.05 1.85 7.56 -2.39 -0.02 1.83 16 25 H 0.09 4.46 5.36 -2.38 -0.01 4.45 16 26 H 0.07 2.70 6.39 -2.39 -0.02 2.68 16 27 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.13 4.82 4.86 -2.91 -0.01 4.81 16 29 H 0.12 4.38 7.45 -2.91 -0.02 4.36 16 30 H 0.20 4.73 7.31 -2.91 -0.02 4.71 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -78.62 295.73 6.18 -72.44 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.10 Total: 15.91 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 6.68 Total: -0.66 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -3.56 Total: -93.08 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.07 Total: -39.91 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -78.62 6.18 -72.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.477 kcal (2) G-P(sol) polarization free energy of solvation -78.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds