Wall clock time and date at job start Mon Mar 30 2020 18:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31797 * 119.08676 * 2 1 4 4 C 1.32502 * 120.99049 * 179.97438 * 3 2 1 5 5 C 1.38217 * 119.18416 * 359.71606 * 4 3 2 6 6 C 1.50695 * 120.83164 * 180.30239 * 5 4 3 7 7 C 1.39489 * 118.33558 * 0.54109 * 5 4 3 8 8 N 1.39048 * 120.52197 * 179.73239 * 7 5 4 9 9 C 1.34777 * 119.99967 * 179.44604 * 8 7 5 10 10 O 1.21273 * 120.00216 * 0.28155 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27712 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47398 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99463 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00445 * 180.02562 * 13 12 11 16 16 N 1.31524 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00395 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46636 * 59.99870 * 17 15 13 19 19 H 1.48498 * 109.47594 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47239 * 300.00311 * 17 15 13 21 21 N 1.31744 * 119.08568 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47452 * 270.02715 * 1 2 3 23 23 H 1.09003 * 109.47304 * 30.02555 * 1 2 3 24 24 H 1.09006 * 109.47132 * 150.02802 * 1 2 3 25 25 H 1.08005 * 120.40554 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.46955 * 270.24645 * 6 5 4 27 27 H 1.08996 * 109.47299 * 30.24503 * 6 5 4 28 28 H 1.08996 * 109.47275 * 150.24745 * 6 5 4 29 29 H 0.97001 * 120.00245 * 359.73034 * 8 7 5 30 30 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 31 31 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 32 32 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 33 33 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 34 34 H 0.96991 * 119.99897 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4719 1.1958 0.0005 5 6 4.1856 0.0121 0.0070 6 6 5.6925 0.0189 0.0147 7 6 3.4761 -1.1888 0.0012 8 7 4.1482 -2.4061 0.0018 9 6 3.4521 -3.5602 0.0075 10 8 2.2396 -3.5370 0.0069 11 6 4.1804 -4.8795 0.0144 12 6 3.1642 -6.0231 0.0193 13 6 3.8925 -7.3424 0.0269 14 1 4.9723 -7.3630 0.0276 15 6 3.1804 -8.5230 0.0317 16 7 1.8654 -8.4979 0.0302 17 14 4.0832 -10.1583 0.0404 18 1 4.9341 -10.2475 1.2542 19 1 3.0969 -11.2684 0.0452 20 1 4.9366 -10.2590 -1.1707 21 7 2.1474 -1.1513 0.0005 22 1 -0.3634 0.0005 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8903 -0.5134 25 1 3.9873 2.1449 0.0009 26 1 6.0610 0.0224 -1.0112 27 1 6.0493 0.9095 0.5319 28 1 6.0573 -0.8704 0.5286 29 1 5.1180 -2.4247 0.0023 30 1 4.8062 -4.9537 -0.8750 31 1 4.8056 -4.9447 0.9049 32 1 2.5381 -5.9491 0.9084 33 1 2.5393 -5.9577 -0.8716 34 1 1.3645 -9.3284 0.0332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353424024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:55 Heat of formation + Delta-G solvation = 6.132806 kcal Electronic energy + Delta-G solvation = -17445.993181 eV Core-core repulsion = 14572.008767 eV Total energy + Delta-G solvation = -2873.984414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.30339 -39.18359 -35.61994 -34.05703 -33.50707 -32.20464 -30.87016 -30.19520 -26.34421 -25.79550 -24.26709 -22.12887 -21.57116 -20.04651 -17.90656 -17.48646 -16.60697 -15.73378 -15.56185 -14.83668 -14.72846 -14.47662 -14.30337 -13.60686 -13.47608 -13.17793 -12.80793 -12.61353 -12.28676 -12.22107 -12.21950 -11.26252 -11.25563 -10.93071 -10.77341 -10.66231 -10.03340 -9.80959 -9.77241 -9.58735 -9.17460 -8.69614 -8.53189 -8.35476 -5.99504 -4.04738 0.89652 1.19881 2.90477 3.09474 3.32263 3.37349 3.38747 3.86875 4.05045 4.20889 4.44311 4.53638 4.73014 4.89568 5.24248 5.28985 5.35441 5.41072 5.57265 5.61808 5.65270 5.79489 5.93278 6.08498 6.08806 6.22858 6.64621 6.72627 6.94079 7.53023 7.68805 7.78436 8.01349 8.25103 8.33108 8.57839 9.02838 9.59129 11.11340 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038050 B = 0.004399 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.701579 B = 6363.914382 C = 7068.547877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.339 3.661 3 N -0.549 5.549 4 C 0.167 3.833 5 C -0.248 4.248 6 C -0.099 4.099 7 C 0.415 3.585 8 N -0.663 5.663 9 C 0.494 3.506 10 O -0.456 6.456 11 C -0.127 4.127 12 C 0.037 3.963 13 C -0.530 4.530 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 N -0.508 5.508 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.166 0.834 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.416 0.584 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 18.757 -0.080 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 N -0.266 5.266 4 C 0.003 3.997 5 C -0.257 4.257 6 C -0.157 4.157 7 C 0.174 3.826 8 N -0.311 5.311 9 C 0.282 3.718 10 O -0.322 6.322 11 C -0.167 4.167 12 C -0.001 4.001 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 N -0.229 5.229 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.183 0.817 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.254 0.746 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.675 18.460 -0.082 19.043 hybrid contribution 2.007 -0.927 0.032 2.211 sum 6.682 17.534 -0.050 18.764 Atomic orbital electron populations 1.20551 0.85669 1.04092 1.03858 1.23213 0.98158 0.82515 0.88949 1.68243 1.09756 1.30315 1.18328 1.22820 0.89414 0.97274 0.90184 1.21056 0.98614 0.93662 1.12350 1.20535 0.89360 1.03168 1.02646 1.18724 0.88881 0.86035 0.89000 1.44277 1.10868 1.03661 1.72340 1.22080 0.89075 0.85254 0.75416 1.90793 1.13605 1.86313 1.41504 1.21944 1.01202 0.90659 1.02879 1.18926 0.92899 0.89438 0.98835 1.21138 0.92888 0.90881 1.51911 0.92584 1.25018 0.94816 0.99263 0.95182 1.69986 1.05461 1.27418 1.49808 0.86635 0.79390 0.83253 0.78548 1.20232 1.21243 1.20228 1.68385 1.06965 1.29942 1.17588 0.89688 0.89824 0.89272 0.81693 0.90823 0.90702 0.91637 0.74577 0.89783 0.89795 0.95651 0.95645 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.32 36.00 0.37 -0.66 16 2 C 0.34 5.28 7.64 -157.24 -1.20 4.08 16 3 N -0.55 -7.64 10.33 -10.79 -0.11 -7.75 16 4 C 0.17 1.89 11.00 -17.27 -0.19 1.70 16 5 C -0.25 -2.88 5.93 -104.17 -0.62 -3.50 16 6 C -0.10 -0.72 9.64 36.00 0.35 -0.37 16 7 C 0.41 6.45 7.44 -154.39 -1.15 5.30 16 8 N -0.66 -9.78 5.31 -11.28 -0.06 -9.84 16 9 C 0.49 9.56 7.79 -10.98 -0.09 9.47 16 10 O -0.46 -10.90 14.27 5.56 0.08 -10.83 16 11 C -0.13 -2.47 5.64 -27.89 -0.16 -2.63 16 12 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 13 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 N -0.51 -9.22 7.93 -9.89 -0.08 -9.30 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.41 8.10 -51.93 -0.42 -0.02 16 28 H 0.06 0.43 6.68 -51.93 -0.35 0.08 16 29 H 0.42 4.34 6.84 -40.82 -0.28 4.06 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.03 0.73 8.10 -51.92 -0.42 0.31 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -35.87 297.00 -7.58 -43.45 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.39 Total: -0.93 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -3.21 Total: 0.76 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.49 Total: -53.33 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.87 -7.58 -43.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353424024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.581 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds