Wall clock time and date at job start Mon Mar 30 2020 18:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31797 * 119.08676 * 2 1 4 4 C 1.32502 * 120.99049 * 179.97438 * 3 2 1 5 5 C 1.38217 * 119.18416 * 359.71606 * 4 3 2 6 6 C 1.50695 * 120.83164 * 180.30239 * 5 4 3 7 7 C 1.39489 * 118.33558 * 0.54109 * 5 4 3 8 8 N 1.39048 * 120.52197 * 179.73239 * 7 5 4 9 9 C 1.34777 * 119.99967 * 179.44604 * 8 7 5 10 10 O 1.21273 * 120.00216 * 0.28155 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27712 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47398 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99463 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00445 * 180.02562 * 13 12 11 16 16 N 1.31524 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00395 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46636 * 59.99870 * 17 15 13 19 19 H 1.48498 * 109.47594 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47239 * 300.00311 * 17 15 13 21 21 N 1.31744 * 119.08568 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47452 * 270.02715 * 1 2 3 23 23 H 1.09003 * 109.47304 * 30.02555 * 1 2 3 24 24 H 1.09006 * 109.47132 * 150.02802 * 1 2 3 25 25 H 1.08005 * 120.40554 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.46955 * 270.24645 * 6 5 4 27 27 H 1.08996 * 109.47299 * 30.24503 * 6 5 4 28 28 H 1.08996 * 109.47275 * 150.24745 * 6 5 4 29 29 H 0.97001 * 120.00245 * 359.73034 * 8 7 5 30 30 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 31 31 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 32 32 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 33 33 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 34 34 H 0.96991 * 119.99897 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4719 1.1958 0.0005 5 6 4.1856 0.0121 0.0070 6 6 5.6925 0.0189 0.0147 7 6 3.4761 -1.1888 0.0012 8 7 4.1482 -2.4061 0.0018 9 6 3.4521 -3.5602 0.0075 10 8 2.2396 -3.5370 0.0069 11 6 4.1804 -4.8795 0.0144 12 6 3.1642 -6.0231 0.0193 13 6 3.8925 -7.3424 0.0269 14 1 4.9723 -7.3630 0.0276 15 6 3.1804 -8.5230 0.0317 16 7 1.8654 -8.4979 0.0302 17 14 4.0832 -10.1583 0.0404 18 1 4.9341 -10.2475 1.2542 19 1 3.0969 -11.2684 0.0452 20 1 4.9366 -10.2590 -1.1707 21 7 2.1474 -1.1513 0.0005 22 1 -0.3634 0.0005 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8903 -0.5134 25 1 3.9873 2.1449 0.0009 26 1 6.0610 0.0224 -1.0112 27 1 6.0493 0.9095 0.5319 28 1 6.0573 -0.8704 0.5286 29 1 5.1180 -2.4247 0.0023 30 1 4.8062 -4.9537 -0.8750 31 1 4.8056 -4.9447 0.9049 32 1 2.5381 -5.9491 0.9084 33 1 2.5393 -5.9577 -0.8716 34 1 1.3645 -9.3284 0.0332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353424024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:55 Heat of formation + Delta-G solvation = -18.714370 kcal Electronic energy + Delta-G solvation = -17447.070636 eV Core-core repulsion = 14572.008767 eV Total energy + Delta-G solvation = -2875.061868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.41305 -40.60356 -36.87993 -35.59938 -35.01969 -33.58769 -32.64145 -31.10074 -28.11420 -26.72564 -25.64672 -23.59797 -22.88485 -21.52893 -19.19671 -18.82946 -18.35097 -17.14014 -17.00010 -16.48966 -16.09101 -15.78268 -15.27101 -15.05694 -14.53002 -14.23350 -14.17594 -14.13709 -13.34613 -13.26652 -13.23085 -13.11158 -12.79916 -12.52531 -12.50980 -11.93568 -11.79924 -11.65982 -11.34475 -11.10858 -10.92413 -10.55988 -9.94532 -9.57345 -8.18109 -6.32651 -0.15064 0.14893 1.42735 1.47224 1.54878 1.65209 1.72359 2.43051 2.79371 3.02090 3.15257 3.22352 3.59917 3.89700 3.95940 4.15261 4.37477 4.46908 4.50252 4.65031 4.70447 4.82282 4.92202 4.94716 5.03528 5.14754 5.23497 5.48349 5.58946 5.59481 5.80409 5.83682 6.15238 6.38941 6.85188 7.05950 7.31088 7.37988 8.94422 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038050 B = 0.004399 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.701579 B = 6363.914382 C = 7068.547877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.315 3.685 3 N -0.551 5.551 4 C 0.163 3.837 5 C -0.225 4.225 6 C -0.100 4.100 7 C 0.378 3.622 8 N -0.643 5.643 9 C 0.499 3.501 10 O -0.516 6.516 11 C -0.113 4.113 12 C 0.041 3.959 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.975 3.025 18 H -0.262 1.262 19 H -0.290 1.290 20 H -0.261 1.261 21 N -0.557 5.557 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.213 0.787 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.437 0.563 30 H 0.114 0.886 31 H 0.114 0.886 32 H -0.018 1.018 33 H -0.018 1.018 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.367 20.080 -0.042 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.047 3.953 3 N -0.269 5.269 4 C -0.001 4.001 5 C -0.233 4.233 6 C -0.157 4.157 7 C 0.138 3.862 8 N -0.294 5.294 9 C 0.287 3.713 10 O -0.387 6.387 11 C -0.153 4.153 12 C 0.003 3.997 13 C -0.581 4.581 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.215 1.215 20 H -0.186 1.186 21 N -0.279 5.279 22 H 0.110 0.890 23 H 0.123 0.877 24 H 0.090 0.910 25 H 0.229 0.771 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.280 0.720 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.384 19.837 -0.045 21.536 hybrid contribution 0.902 -1.185 0.019 1.489 sum 9.285 18.653 -0.025 20.836 Atomic orbital electron populations 1.20583 0.84663 1.04223 1.04380 1.23568 0.99174 0.82515 0.90021 1.68305 1.11332 1.29335 1.17912 1.23671 0.88646 0.99089 0.88706 1.21511 1.00947 0.91818 1.09009 1.20725 0.85705 1.05046 1.04266 1.19105 0.88815 0.87171 0.91108 1.43769 1.11637 1.02453 1.71522 1.21933 0.88295 0.86482 0.74565 1.90782 1.16023 1.87259 1.44607 1.21697 0.99529 0.88413 1.05664 1.18703 0.93606 0.92557 0.94788 1.21667 0.94111 0.91371 1.50953 0.90224 1.26143 0.95564 1.04111 0.94591 1.70180 1.07735 1.28542 1.51369 0.85363 0.77984 0.77315 0.79520 1.18616 1.21541 1.18604 1.68272 1.09043 1.31737 1.18863 0.88965 0.87683 0.91012 0.77078 0.89087 0.87912 0.90744 0.72017 0.86838 0.86838 0.99946 0.99940 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 10.32 71.23 0.73 -1.35 16 2 C 0.31 9.96 7.64 138.76 1.06 11.02 16 3 N -0.55 -14.62 10.33 -188.06 -1.94 -16.57 16 4 C 0.16 3.19 11.00 84.59 0.93 4.12 16 5 C -0.22 -4.57 5.93 -19.57 -0.12 -4.69 16 6 C -0.10 -0.98 9.64 71.23 0.69 -0.29 16 7 C 0.38 11.49 7.44 132.98 0.99 12.48 16 8 N -0.64 -18.32 5.31 -307.99 -1.63 -19.95 16 9 C 0.50 19.67 7.79 87.66 0.68 20.35 16 10 O -0.52 -26.27 14.27 -3.01 -0.04 -26.31 16 11 C -0.11 -4.37 5.64 29.85 0.17 -4.20 16 12 C 0.04 2.27 4.26 29.85 0.13 2.39 16 13 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 14 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 15 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 16 N -0.94 -59.59 13.29 21.45 0.28 -59.30 16 17 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 N -0.56 -20.90 7.93 -185.20 -1.47 -22.37 16 22 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 0.52 8.10 -2.39 -0.02 0.50 16 28 H 0.07 0.64 6.68 -2.39 -0.02 0.62 16 29 H 0.44 7.94 6.84 -92.71 -0.63 7.30 16 30 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 31 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 32 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 33 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 34 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -84.19 297.00 3.66 -80.53 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.48 Total: 8.36 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 5.96 Total: 9.75 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -4.76 Total: -118.19 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.04 Total: -26.31 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -84.19 3.66 -80.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353424024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.818 kcal (2) G-P(sol) polarization free energy of solvation -84.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds