Wall clock time and date at job start Mon Mar 30 2020 18:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40086 * 126.03953 * 2 1 4 4 C 1.30844 * 108.20287 * 180.26272 * 3 2 1 5 5 C 1.39865 * 108.20468 * 0.02562 * 4 3 2 6 6 C 1.34954 * 126.03269 * 180.31030 * 2 1 3 7 7 C 1.50702 * 126.12785 * 359.76127 * 6 2 1 8 8 H 1.08996 * 109.86885 * 334.29554 * 7 6 2 9 9 C 1.54321 * 109.88437 * 95.31369 * 7 6 2 10 10 C 1.55151 * 102.93997 * 141.60717 * 9 7 6 11 11 C 1.54906 * 101.58561 * 324.49849 * 10 9 7 12 12 N 1.47024 * 109.87815 * 213.12473 * 7 6 2 13 13 C 1.34772 * 125.65199 * 61.61778 * 12 7 6 14 14 O 1.21689 * 119.99893 * 359.97438 * 13 12 7 15 15 C 1.46378 * 120.00232 * 179.97438 * 13 12 7 16 16 H 1.08000 * 119.99776 * 0.02562 * 15 13 12 17 17 C 1.40043 * 120.00032 * 179.97438 * 15 13 12 18 18 N 1.30670 * 120.00038 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99961 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47129 * 90.00755 * 19 17 15 21 21 H 1.48494 * 109.47308 * 210.00557 * 19 17 15 22 22 H 1.48500 * 109.47047 * 330.00955 * 19 17 15 23 23 H 1.08996 * 109.47298 * 264.48187 * 1 2 3 24 24 H 1.08999 * 109.46933 * 24.48264 * 1 2 3 25 25 H 1.09000 * 109.47213 * 144.47316 * 1 2 3 26 26 H 1.07995 * 125.89032 * 180.02562 * 4 3 2 27 27 H 1.08001 * 126.04195 * 179.97438 * 5 4 3 28 28 H 1.08991 * 110.71859 * 259.97412 * 9 7 6 29 29 H 1.08997 * 110.71950 * 23.06993 * 9 7 6 30 30 H 1.09005 * 111.00445 * 82.57639 * 10 9 7 31 31 H 1.09001 * 111.00316 * 206.38534 * 10 9 7 32 32 H 1.09002 * 110.36840 * 155.84718 * 11 10 9 33 33 H 1.09002 * 110.36863 * 278.06329 * 11 10 9 34 34 H 0.97002 * 120.00035 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0057 5 6 3.5437 -0.6666 -0.0101 6 6 2.2589 -1.0913 -0.0059 7 6 1.7972 -2.5259 -0.0086 8 1 0.8060 -2.5969 0.4391 9 6 1.7595 -3.0624 -1.4551 10 6 2.2658 -4.5206 -1.2981 11 6 3.3192 -4.3647 -0.1731 12 7 2.7489 -3.3587 0.7413 13 6 3.0503 -3.2245 2.0480 14 8 2.5162 -2.3536 2.7092 15 6 4.0200 -4.1262 2.6719 16 1 4.4942 -4.8989 2.0849 17 6 4.3335 -3.9863 4.0296 18 7 3.7601 -3.0512 4.7396 19 14 5.5715 -5.1366 4.8256 20 1 6.9335 -4.5569 4.7067 21 1 5.2321 -5.3129 6.2604 22 1 5.5333 -6.4545 4.1422 23 1 -0.3633 -0.0988 1.0228 24 1 -0.3633 0.9353 -0.4259 25 1 -0.3633 -0.8363 -0.5972 26 1 4.4054 1.3709 -0.0068 27 1 4.4210 -1.2965 -0.0156 28 1 0.7420 -3.0473 -1.8455 29 1 2.4261 -2.4869 -2.0973 30 1 1.4579 -5.1834 -0.9878 31 1 2.7271 -4.8753 -2.2197 32 1 3.4622 -5.3121 0.3467 33 1 4.2649 -4.0124 -0.5851 34 1 3.9770 -2.9546 5.6801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928369784.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:31 Heat of formation + Delta-G solvation = 47.870275 kcal Electronic energy + Delta-G solvation = -18678.910841 eV Core-core repulsion = 15806.736299 eV Total energy + Delta-G solvation = -2872.174542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72374 -38.32422 -35.65519 -32.81189 -32.51127 -30.64429 -30.40127 -27.28449 -26.25382 -26.12696 -22.77947 -20.95342 -20.61317 -20.04788 -18.36201 -16.84747 -16.34013 -15.61106 -15.03355 -14.85094 -14.25642 -13.91500 -13.45473 -13.06232 -12.95534 -12.70808 -12.44785 -12.23042 -11.98488 -11.85281 -11.31326 -11.22427 -11.13173 -10.89867 -10.80077 -10.46853 -10.28382 -10.18544 -10.06604 -8.87068 -8.68359 -7.89122 -7.58890 -7.30016 -6.20395 -4.65560 2.45884 3.04264 3.13473 3.20161 3.23130 3.48942 4.06565 4.51387 4.54987 4.91882 4.95591 5.05929 5.16229 5.42958 5.47190 5.58051 5.67800 5.71033 5.78808 5.87739 6.00243 6.09347 6.19963 6.32489 6.42958 6.49372 6.61190 6.87195 7.27400 7.27735 7.42601 7.60602 8.07113 8.27602 8.38984 9.00928 9.45851 10.56911 10.75765 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023698 B = 0.007984 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.232389 B = 3506.027454 C = 4126.467648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.374 5.374 3 N -0.314 5.314 4 C 0.043 3.957 5 C -0.251 4.251 6 C 0.106 3.894 7 C 0.204 3.796 8 H 0.066 0.934 9 C -0.121 4.121 10 C -0.133 4.133 11 C 0.117 3.883 12 N -0.631 5.631 13 C 0.573 3.427 14 O -0.565 6.565 15 C -0.537 4.537 16 H 0.070 0.930 17 C 0.087 3.913 18 N -0.766 5.766 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.176 0.824 27 H 0.139 0.861 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 -1.117 -11.699 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.157 5.157 3 N -0.136 5.136 4 C -0.143 4.143 5 C -0.281 4.281 6 C -0.023 4.023 7 C 0.097 3.903 8 H 0.084 0.916 9 C -0.160 4.160 10 C -0.171 4.171 11 C -0.007 4.007 12 N -0.371 5.371 13 C 0.379 3.621 14 O -0.446 6.446 15 C -0.574 4.574 16 H 0.088 0.912 17 C -0.133 4.133 18 N -0.395 5.395 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.193 0.807 27 H 0.157 0.843 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.161 0.487 -11.004 11.774 hybrid contribution 1.222 -1.189 0.540 1.789 sum -2.938 -0.702 -10.463 10.891 Atomic orbital electron populations 1.21711 0.75392 1.03448 1.03144 1.48245 1.05967 1.03517 1.58001 1.77173 1.01840 1.08181 1.26381 1.23658 0.94961 0.95249 1.00385 1.21023 0.96580 0.94283 1.16171 1.21465 0.91381 0.90330 0.99086 1.19628 0.94202 0.84335 0.92159 0.91639 1.22635 1.01575 0.96781 0.94988 1.22805 0.99442 0.95869 0.99023 1.21932 0.95111 0.93543 0.90162 1.48858 1.45493 1.33298 1.09473 1.18056 0.82477 0.84706 0.76819 1.90635 1.55980 1.37485 1.60538 1.20859 1.24880 1.16928 0.94738 0.91212 1.25718 0.95542 0.94823 0.97195 1.70023 1.35041 1.27031 1.07394 0.86377 0.80922 0.80981 0.78537 1.19697 1.20490 1.18869 0.90964 0.89744 0.90263 0.80746 0.84284 0.90983 0.90660 0.91003 0.90704 0.90832 0.93241 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.50 10.98 59.85 0.66 2.16 16 2 N -0.37 -7.24 4.01 -63.88 -0.26 -7.50 16 3 N -0.31 -6.38 12.58 30.62 0.39 -5.99 16 4 C 0.04 0.83 12.03 -17.36 -0.21 0.62 16 5 C -0.25 -5.27 10.15 -40.01 -0.41 -5.68 16 6 C 0.11 2.17 5.10 -82.26 -0.42 1.75 16 7 C 0.20 3.90 2.95 -68.10 -0.20 3.70 16 8 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 9 C -0.12 -1.69 6.47 -24.90 -0.16 -1.85 16 10 C -0.13 -1.75 7.08 -24.59 -0.17 -1.93 16 11 C 0.12 2.04 6.52 -2.53 -0.02 2.02 16 12 N -0.63 -14.04 2.74 -165.97 -0.45 -14.49 16 13 C 0.57 16.15 7.42 -12.99 -0.10 16.05 16 14 O -0.57 -18.32 14.85 5.20 0.08 -18.24 16 15 C -0.54 -14.97 8.98 -35.63 -0.32 -15.29 16 16 H 0.07 1.78 6.64 -52.49 -0.35 1.43 16 17 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 18 N -0.77 -23.03 11.83 55.55 0.66 -22.37 16 19 Si 0.91 20.05 29.56 -169.99 -5.02 15.03 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.08 0.91 7.84 -51.93 -0.41 0.50 16 26 H 0.18 2.73 8.06 -52.49 -0.42 2.30 16 27 H 0.14 2.93 8.06 -52.49 -0.42 2.51 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.03 7.84 -51.93 -0.41 0.63 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.30 7.14 -51.93 -0.37 0.93 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 290.49 15.07 4.38 4.38 Total: -1.00 -36.46 290.49 -6.13 -42.59 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.45 Total: 2.72 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.44 Total: 3.88 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.33 Total: -50.35 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.08 Total: -18.24 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -36.46 -6.13 -42.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928369784.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.458 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds