Wall clock time and date at job start Mon Mar 30 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00078 * 2 1 4 4 C 1.50699 * 109.46964 * 269.99987 * 3 2 1 5 5 H 1.07996 * 120.00344 * 359.97438 * 4 3 2 6 6 C 1.37885 * 120.00054 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99497 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00119 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47350 * 59.99702 * 8 6 4 10 10 H 1.48496 * 109.47469 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47378 * 299.99739 * 8 6 4 12 12 C 1.34773 * 119.99952 * 179.97438 * 2 1 3 13 13 O 1.21286 * 120.00061 * 185.05702 * 12 2 1 14 14 C 1.50699 * 120.00255 * 5.05321 * 12 2 1 15 15 N 1.46498 * 115.54893 * 66.26657 * 14 12 2 16 16 C 1.34951 * 126.03768 * 9.68731 * 15 14 12 17 17 C 1.35316 * 107.74866 * 179.76693 * 16 15 14 18 18 C 1.39872 * 107.91854 * 0.22900 * 17 16 15 19 19 N 1.30832 * 108.20447 * 359.97438 * 18 17 16 20 20 C 1.52993 * 117.50343 * 211.94244 * 14 12 2 21 21 C 1.53003 * 117.49924 * 280.60384 * 14 12 2 22 22 H 1.08996 * 109.47098 * 264.84882 * 1 2 3 23 23 H 1.08996 * 109.46814 * 24.84595 * 1 2 3 24 24 H 1.08996 * 109.47068 * 144.84912 * 1 2 3 25 25 H 1.09000 * 109.47151 * 29.99763 * 3 2 1 26 26 H 1.09000 * 109.47558 * 149.99497 * 3 2 1 27 27 H 0.96998 * 119.99580 * 180.02562 * 7 6 4 28 28 H 1.07998 * 126.12295 * 0.03038 * 16 15 14 29 29 H 1.08002 * 126.04047 * 180.24757 * 17 16 15 30 30 H 1.07999 * 125.89704 * 179.97438 * 18 17 16 31 31 H 1.09005 * 117.50210 * 215.00628 * 20 14 12 32 32 H 1.09005 * 117.49713 * 0.02562 * 20 14 12 33 33 H 1.08997 * 117.50061 * 359.96948 * 21 14 12 34 34 H 1.08999 * 117.49946 * 144.99790 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6731 8 14 3.4389 3.4162 -3.4339 9 1 2.1416 3.5941 -4.1344 10 1 4.1813 4.7023 -3.4340 11 1 4.2414 2.3809 -4.1336 12 6 2.1389 -1.1672 0.0005 13 8 3.3482 -1.1692 0.0931 14 6 1.3899 -2.4698 -0.1138 15 7 0.7083 -2.6967 -1.3906 16 6 0.8432 -1.9497 -2.5064 17 6 0.0532 -2.4903 -3.4628 18 6 -0.5905 -3.6028 -2.9111 19 7 -0.2005 -3.7260 -1.6683 20 6 1.9793 -3.6886 0.5987 21 6 0.7211 -3.0135 1.1503 22 1 -0.3633 -0.0923 1.0235 23 1 -0.3633 0.9325 -0.4318 24 1 -0.3633 -0.8402 -0.5916 25 1 1.6085 2.0284 0.5138 26 1 3.1499 1.1384 0.5139 27 1 4.0311 4.4434 -0.8504 28 1 1.4726 -1.0792 -2.6175 29 1 -0.0600 -2.1271 -4.4736 30 1 -1.2889 -4.2486 -3.4226 31 1 1.8601 -4.6594 0.1175 32 1 2.9087 -3.5483 1.1506 33 1 0.8233 -2.4293 2.0648 34 1 -0.2259 -3.5401 1.0320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930592850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:39 Heat of formation + Delta-G solvation = 64.123990 kcal Electronic energy + Delta-G solvation = -18556.927798 eV Core-core repulsion = 15685.458070 eV Total energy + Delta-G solvation = -2871.469728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.45747 -40.83583 -37.74124 -36.80830 -34.74072 -32.30206 -30.77794 -30.02816 -27.70665 -26.17724 -24.25388 -23.60348 -22.45011 -21.55561 -20.06412 -19.01077 -18.59304 -17.48580 -17.01506 -16.42795 -16.14806 -15.81300 -15.52477 -15.28099 -14.49000 -14.25669 -14.12721 -13.91592 -13.65344 -13.59835 -13.23874 -12.89633 -12.64152 -12.60524 -12.26965 -12.18415 -12.16485 -11.79611 -11.79201 -10.90541 -10.66823 -10.30400 -9.63015 -9.50236 -8.26513 -6.41360 0.80046 0.85308 1.37256 1.40396 1.47675 1.76381 1.92714 1.97030 2.36696 2.60258 3.04114 3.16448 3.27107 3.68154 3.91991 4.15093 4.21910 4.29955 4.50449 4.52112 4.65233 4.75857 4.78000 4.81125 4.92156 5.00255 5.14043 5.14354 5.43048 5.71119 5.75876 5.91914 5.97815 6.44550 6.65500 6.70404 7.03931 7.30190 8.81030 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.007651 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.053499 B = 3658.979607 C = 4328.808675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.588 5.588 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.540 3.460 13 O -0.570 6.570 14 C 0.059 3.941 15 N -0.338 5.338 16 C 0.041 3.959 17 C -0.268 4.268 18 C 0.053 3.947 19 N -0.309 5.309 20 C -0.136 4.136 21 C -0.121 4.121 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.030 0.970 26 H 0.006 0.994 27 H 0.268 0.732 28 H 0.148 0.852 29 H 0.169 0.831 30 H 0.225 0.775 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 -12.637 -1.308 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.318 5.318 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.202 1.202 12 C 0.324 3.676 13 O -0.449 6.449 14 C -0.030 4.030 15 N -0.120 5.120 16 C -0.105 4.105 17 C -0.297 4.297 18 C -0.133 4.133 19 N -0.130 5.130 20 C -0.174 4.174 21 C -0.159 4.159 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.048 0.952 26 H 0.024 0.976 27 H 0.077 0.923 28 H 0.165 0.835 29 H 0.187 0.813 30 H 0.242 0.758 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.144 -13.057 -0.009 16.534 hybrid contribution 0.760 1.365 -1.543 2.196 sum -9.384 -11.692 -1.552 15.072 Atomic orbital electron populations 1.21920 0.78074 1.03502 1.02660 1.48088 1.08169 1.06100 1.69431 1.18929 0.91301 0.79378 0.96642 1.21606 1.37309 1.06873 0.92642 0.92501 1.25816 0.94741 0.96312 1.01879 1.70035 1.38563 1.14779 1.33100 0.85505 0.78940 0.77451 0.79220 1.18366 1.20437 1.20169 1.19389 0.86555 0.84166 0.77444 1.90684 1.15422 1.87118 1.51675 1.20714 1.03610 0.94777 0.83863 1.47764 1.33913 1.22268 1.08039 1.22685 1.01760 0.98266 0.87783 1.21766 1.04978 1.01166 1.01804 1.24523 0.99764 0.97757 0.91211 1.77233 1.08264 1.08934 1.18576 1.23493 0.98799 0.94766 1.00349 1.23577 0.98568 1.00773 0.92977 0.90549 0.90526 0.91303 0.95159 0.97630 0.92274 0.83464 0.81326 0.75840 0.86168 0.87097 0.86060 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.63 9.94 127.77 1.27 3.90 16 2 N -0.59 -24.91 2.86 -851.15 -2.43 -27.34 16 3 C 0.26 13.57 5.18 85.63 0.44 14.01 16 4 C -0.55 -30.43 9.39 25.60 0.24 -30.19 16 5 H 0.06 3.10 7.41 -2.91 -0.02 3.07 16 6 C 0.01 0.68 5.46 84.66 0.46 1.15 16 7 N -0.93 -54.74 13.29 21.45 0.28 -54.45 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.54 22.90 6.02 87.66 0.53 23.42 16 13 O -0.57 -29.44 16.27 -3.05 -0.05 -29.48 16 14 C 0.06 1.94 1.85 2.86 0.01 1.94 16 15 N -0.34 -10.80 3.02 -311.26 -0.94 -11.74 16 16 C 0.04 1.35 9.66 83.54 0.81 2.16 16 17 C -0.27 -7.00 10.80 21.99 0.24 -6.77 16 18 C 0.05 1.21 12.03 85.24 1.02 2.24 16 19 N -0.31 -8.61 12.20 -57.03 -0.70 -9.30 16 20 C -0.14 -3.69 9.95 30.62 0.30 -3.38 16 21 C -0.12 -2.91 9.78 30.62 0.30 -2.61 16 22 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.08 2.53 8.03 -2.39 -0.02 2.51 16 24 H 0.07 2.12 5.16 -2.39 -0.01 2.11 16 25 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 26 H 0.01 0.34 7.36 -2.39 -0.02 0.32 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.16 16 28 H 0.15 5.72 7.34 -2.91 -0.02 5.70 16 29 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.23 2.99 8.06 -2.91 -0.02 2.97 16 31 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 32 H 0.11 3.11 8.01 -2.38 -0.02 3.09 16 33 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.13 2.77 8.03 -2.39 -0.02 2.75 16 Total: -1.00 -69.91 296.80 4.91 -64.99 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.10 Total: 15.71 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.62 Total: 5.86 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -3.78 Total: -102.84 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.05 Total: -29.48 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -69.91 4.91 -64.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930592850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.116 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds