Wall clock time and date at job start Mon Mar 30 2020 18:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00516 * 2 1 4 4 C 1.50701 * 109.47419 * 270.00663 * 3 2 1 5 5 H 1.08005 * 119.99879 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99881 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99911 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00048 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47063 * 90.00070 * 8 6 4 10 10 H 1.48497 * 109.46888 * 209.99978 * 8 6 4 11 11 H 1.48497 * 109.47309 * 330.00100 * 8 6 4 12 12 C 1.34781 * 119.99554 * 180.02562 * 2 1 3 13 13 O 1.21756 * 119.99609 * 179.97438 * 12 2 1 14 14 C 1.41752 * 120.00255 * 359.97438 * 12 2 1 15 15 C 1.35175 * 119.99830 * 176.57939 * 14 12 2 16 16 C 1.46785 * 120.00443 * 7.07046 * 15 14 12 17 17 C 1.36742 * 126.24440 * 247.29839 * 16 15 14 18 18 N 1.36058 * 106.72142 * 179.83932 * 17 16 15 19 19 C 1.46506 * 126.17931 * 180.15353 * 18 17 16 20 20 C 1.35848 * 107.64209 * 0.41792 * 18 17 16 21 21 N 1.30181 * 109.11117 * 359.73404 * 20 18 17 22 22 H 1.09003 * 109.46831 * 269.99611 * 1 2 3 23 23 H 1.08999 * 109.47421 * 29.99376 * 1 2 3 24 24 H 1.09000 * 109.47435 * 149.99744 * 1 2 3 25 25 H 1.09003 * 109.46731 * 30.00060 * 3 2 1 26 26 H 1.08997 * 109.47237 * 149.99982 * 3 2 1 27 27 H 0.96997 * 120.00463 * 180.02562 * 7 6 4 28 28 H 1.07999 * 119.99908 * 356.57774 * 14 12 2 29 29 H 1.08002 * 120.00032 * 186.79259 * 15 14 12 30 30 H 1.07997 * 126.64012 * 0.02562 * 17 16 15 31 31 H 1.09005 * 109.46646 * 270.28743 * 19 18 17 32 32 H 1.08998 * 109.46728 * 30.28256 * 19 18 17 33 33 H 1.08999 * 109.46773 * 150.28985 * 19 18 17 34 34 H 1.08002 * 125.44800 * 179.77074 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.3456 3.2575 -2.9126 8 14 3.7319 3.9297 -0.2528 9 1 5.1053 3.5089 0.1242 10 1 3.7469 5.3563 -0.6647 11 1 2.8253 3.7600 0.9110 12 6 2.1388 -1.1673 -0.0005 13 8 3.3563 -1.1673 -0.0010 14 6 1.4300 -2.3949 -0.0005 15 6 2.1040 -3.5645 -0.0709 16 6 3.5696 -3.5730 0.0092 17 6 4.4323 -3.9085 -0.9973 18 7 5.6900 -3.7760 -0.4953 19 6 6.9401 -4.0264 -1.2171 20 6 5.5771 -3.3755 0.7978 21 7 4.3161 -3.2546 1.0980 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5139 25 1 1.6085 2.0283 0.5139 26 1 3.1499 1.1383 0.5138 27 1 3.8225 4.0833 -3.0898 28 1 0.3514 -2.3957 0.0557 29 1 1.5639 -4.4932 -0.1815 30 1 4.1669 -4.2159 -1.9980 31 1 7.2282 -5.0704 -1.0935 32 1 6.7973 -3.8119 -2.2762 33 1 7.7247 -3.3833 -0.8186 34 1 6.4016 -3.1868 1.4694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930594247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:42 Heat of formation + Delta-G solvation = 42.169707 kcal Electronic energy + Delta-G solvation = -17993.670194 eV Core-core repulsion = 15121.248458 eV Total energy + Delta-G solvation = -2872.421737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.61460 -40.60235 -36.66464 -35.22071 -34.71760 -33.64703 -30.81622 -29.76240 -27.75077 -27.21861 -25.45253 -23.28197 -21.91373 -21.29478 -19.21824 -19.14350 -18.40503 -17.54828 -16.74705 -16.36731 -16.24003 -15.63368 -15.23367 -14.84936 -14.74607 -14.57738 -14.15019 -13.69168 -13.61837 -13.47087 -13.44741 -13.28341 -13.03292 -12.62904 -12.39406 -12.04975 -11.76405 -11.04678 -10.85470 -10.70799 -10.32761 -10.11471 -9.24971 -8.89723 -8.36246 -6.40129 0.32995 1.28044 1.29070 1.32485 1.42256 2.12273 2.28520 2.35118 2.52012 2.74972 2.97850 3.78940 4.01672 4.11547 4.14607 4.26724 4.45863 4.47076 4.64872 4.69445 4.69713 4.76879 4.82286 4.95071 4.99432 5.26834 5.41719 5.45611 5.48003 5.74233 5.96146 6.26911 6.45095 6.60047 6.86257 7.21354 7.27832 7.62279 8.80926 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.007004 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.611458 B = 3997.014795 C = 4779.414131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.229 3.771 4 C -0.530 4.530 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.270 1.270 11 H -0.243 1.243 12 C 0.519 3.481 13 O -0.570 6.570 14 C -0.214 4.214 15 C 0.024 3.976 16 C 0.001 3.999 17 C -0.047 4.047 18 N -0.464 5.464 19 C 0.070 3.930 20 C 0.167 3.833 21 N -0.499 5.499 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.044 0.956 26 H 0.011 0.989 27 H 0.268 0.732 28 H 0.169 0.831 29 H 0.182 0.818 30 H 0.192 0.808 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -16.506 5.785 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.346 5.346 3 C 0.106 3.894 4 C -0.569 4.569 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.166 1.166 12 C 0.311 3.689 13 O -0.451 6.451 14 C -0.235 4.235 15 C 0.003 3.997 16 C -0.126 4.126 17 C -0.181 4.181 18 N -0.147 5.147 19 C -0.071 4.071 20 C -0.116 4.116 21 N -0.218 5.218 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.077 0.923 28 H 0.187 0.813 29 H 0.199 0.801 30 H 0.209 0.791 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.615 -16.117 6.370 17.341 hybrid contribution 0.841 0.844 -0.789 1.429 sum 1.456 -15.273 5.581 16.325 Atomic orbital electron populations 1.21941 0.77992 1.03844 1.02523 1.47915 1.08206 1.06036 1.72438 1.19193 0.92346 0.82790 0.95091 1.21558 1.36513 1.06522 0.92319 0.95523 1.25831 0.95335 0.98903 0.98599 1.70047 1.42906 1.24537 1.21123 0.85706 0.79367 0.77922 0.79879 1.20427 1.19535 1.16589 1.17978 0.87813 0.85730 0.77364 1.90786 1.15581 1.87687 1.51045 1.22437 1.02047 0.91294 1.07725 1.22049 0.89380 0.98472 0.89764 1.19759 0.94724 1.06224 0.91922 1.22886 0.83931 1.10489 1.00806 1.45460 1.07597 1.50063 1.11544 1.22290 0.82817 1.04225 0.97804 1.25406 0.96465 1.04281 0.85492 1.70511 1.02805 1.18663 1.29806 0.90856 0.91899 0.88894 0.93823 0.97136 0.92267 0.81346 0.80086 0.79085 0.88137 0.89409 0.88503 0.75981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.50 10.10 127.77 1.29 3.79 16 2 N -0.61 -27.52 2.86 -861.69 -2.46 -29.98 16 3 C 0.23 12.09 4.23 85.63 0.36 12.45 16 4 C -0.53 -32.88 9.94 25.60 0.25 -32.62 16 5 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 6 C 0.01 0.68 5.47 84.65 0.46 1.14 16 7 N -0.95 -61.40 13.96 21.45 0.30 -61.10 16 8 Si 0.95 46.66 27.47 68.60 1.88 48.55 16 9 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.24 -10.94 6.54 99.48 0.65 -10.29 16 12 C 0.52 23.41 7.42 85.11 0.63 24.04 16 13 O -0.57 -30.73 12.73 -4.53 -0.06 -30.79 16 14 C -0.21 -6.89 9.08 22.43 0.20 -6.69 16 15 C 0.02 0.70 10.18 23.80 0.24 0.94 16 16 C 0.00 0.04 4.41 40.42 0.18 0.22 16 17 C -0.05 -1.43 11.53 83.69 0.96 -0.47 16 18 N -0.46 -12.88 3.14 -550.90 -1.73 -14.61 16 19 C 0.07 1.15 11.16 127.77 1.43 2.57 16 20 C 0.17 5.31 12.55 180.10 2.26 7.57 16 21 N -0.50 -19.50 10.12 -189.04 -1.91 -21.41 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 24 H 0.09 2.32 6.13 -2.39 -0.01 2.30 16 25 H 0.04 2.14 7.13 -2.39 -0.02 2.12 16 26 H 0.01 0.61 6.85 -2.39 -0.02 0.59 16 27 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 28 H 0.17 3.84 6.15 -2.91 -0.02 3.82 16 29 H 0.18 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.19 4.65 8.06 -2.91 -0.02 4.62 16 31 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.22 5.31 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -90.13 294.53 5.33 -84.80 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.04 Total: 11.62 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 8.28 Total: 12.94 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -5.81 Total: -127.11 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.06 Total: -30.79 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.88 Total: 48.55 kcal Total: -90.13 5.33 -84.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.965 kcal (2) G-P(sol) polarization free energy of solvation -90.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds