Wall clock time and date at job start Mon Mar 30 2020 18:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47085 * 2 1 4 4 C 1.36802 * 119.99848 * 266.23651 * 3 2 1 5 5 H 1.08003 * 119.99897 * 143.68321 * 4 3 2 6 6 C 1.39043 * 120.00138 * 323.68584 * 4 3 2 7 7 N 1.31378 * 120.00177 * 154.03079 * 6 4 3 8 8 Si 1.86805 * 119.99978 * 334.02627 * 6 4 3 9 9 H 1.48495 * 109.46888 * 93.77456 * 8 6 4 10 10 H 1.48500 * 109.47107 * 213.77378 * 8 6 4 11 11 H 1.48492 * 109.47116 * 333.77132 * 8 6 4 12 12 C 1.34774 * 120.00008 * 86.23771 * 3 2 1 13 13 O 1.21804 * 119.99867 * 180.02562 * 12 3 2 14 14 C 1.41562 * 120.00125 * 0.02562 * 12 3 2 15 15 C 1.35323 * 120.00508 * 179.97438 * 14 12 3 16 16 C 1.46727 * 120.00280 * 180.27265 * 15 14 12 17 17 C 1.36801 * 126.24839 * 179.43627 * 16 15 14 18 18 N 1.36074 * 106.71419 * 179.90666 * 17 16 15 19 19 C 1.46494 * 126.18141 * 180.13271 * 18 17 16 20 20 C 1.35862 * 107.64150 * 0.36174 * 18 17 16 21 21 N 1.30182 * 109.11870 * 359.77024 * 20 18 17 22 22 H 1.08999 * 109.46589 * 299.99562 * 1 2 3 23 23 H 1.09000 * 109.47179 * 59.99915 * 1 2 3 24 24 H 1.08997 * 109.46655 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47038 * 240.00403 * 2 1 3 26 26 H 1.09000 * 109.47179 * 120.00085 * 2 1 3 27 27 H 0.96995 * 119.99890 * 179.97438 * 7 6 4 28 28 H 1.08000 * 119.99563 * 359.97438 * 14 12 3 29 29 H 1.08008 * 119.99323 * 0.02562 * 15 14 12 30 30 H 1.08004 * 126.64565 * 0.04252 * 17 16 15 31 31 H 1.08999 * 109.47559 * 270.24794 * 19 18 17 32 32 H 1.09006 * 109.47261 * 30.24764 * 19 18 17 33 33 H 1.08997 * 109.47606 * 150.24430 * 19 18 17 34 34 H 1.07996 * 125.43719 * 179.80833 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3197 2.0002 -1.1822 5 1 2.1117 3.0523 -1.3092 6 6 2.8936 1.2747 -2.2203 7 7 2.7274 1.6638 -3.4640 8 14 3.9011 -0.2533 -1.8464 9 1 3.0297 -1.4530 -1.9282 10 1 5.0031 -0.3737 -2.8346 11 1 4.4715 -0.1479 -0.4795 12 6 2.1708 2.0421 1.1647 13 8 2.5763 3.1906 1.1646 14 6 1.8595 1.4014 2.3880 15 6 2.0130 2.0647 3.5575 16 6 1.6961 1.3986 4.8259 17 6 1.8137 1.9414 6.0761 18 7 1.4141 0.9847 6.9573 19 6 1.3680 1.1171 8.4155 20 6 1.0706 -0.1174 6.2408 21 7 1.2382 0.1287 4.9735 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 3.1281 1.1579 -4.1881 28 1 1.4995 0.3832 2.3880 29 1 2.3727 3.0832 3.5574 30 1 2.1552 2.9373 6.3169 31 1 2.3237 0.8079 8.8389 32 1 1.1727 2.1563 8.6800 33 1 0.5734 0.4856 8.8128 34 1 0.7146 -1.0485 6.6563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930618642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:52 Heat of formation + Delta-G solvation = 37.599486 kcal Electronic energy + Delta-G solvation = -17610.168838 eV Core-core repulsion = 14737.548921 eV Total energy + Delta-G solvation = -2872.619916 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.80993 -40.76131 -37.15157 -35.55368 -34.41038 -33.48122 -31.36354 -30.40433 -28.14317 -26.94954 -24.63607 -24.10075 -22.13620 -21.28444 -19.49965 -18.87300 -18.44561 -17.50880 -17.40139 -16.52218 -16.02653 -15.74471 -15.24000 -14.92052 -14.80516 -14.46615 -14.35253 -13.94319 -13.83973 -13.67642 -13.37342 -13.16974 -12.85961 -12.68668 -12.47099 -11.94277 -11.66410 -11.21904 -11.05481 -10.99474 -10.42289 -10.40797 -9.74527 -8.91420 -8.56606 -6.07999 0.03291 1.17492 1.27132 1.34745 1.44193 1.95246 2.16458 2.19870 2.63710 2.85130 3.10297 3.60212 3.89144 4.04644 4.09989 4.21314 4.30808 4.41696 4.47370 4.52104 4.55342 4.66796 4.79727 4.92324 4.98863 5.19290 5.31838 5.38718 5.49222 5.59656 5.75286 6.04219 6.31412 6.59376 6.94837 7.09002 7.30727 7.91492 8.60898 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039139 B = 0.004989 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.220241 B = 5611.452318 C = 5804.211013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 N -0.467 5.467 4 C -0.337 4.337 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.897 5.897 8 Si 0.939 3.061 9 H -0.235 1.235 10 H -0.279 1.279 11 H -0.269 1.269 12 C 0.483 3.517 13 O -0.632 6.632 14 C -0.207 4.207 15 C 0.011 3.989 16 C -0.032 4.032 17 C -0.001 4.001 18 N -0.461 5.461 19 C 0.066 3.934 20 C 0.188 3.812 21 N -0.519 5.519 22 H 0.055 0.945 23 H 0.041 0.959 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.283 0.717 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.209 0.791 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -8.518 25.576 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.043 4.043 3 N -0.186 5.186 4 C -0.465 4.465 5 H 0.064 0.936 6 C -0.182 4.182 7 N -0.534 5.534 8 Si 0.762 3.238 9 H -0.160 1.160 10 H -0.205 1.205 11 H -0.194 1.194 12 C 0.278 3.722 13 O -0.521 6.521 14 C -0.229 4.229 15 C -0.011 4.011 16 C -0.157 4.157 17 C -0.138 4.138 18 N -0.143 5.143 19 C -0.075 4.075 20 C -0.096 4.096 21 N -0.237 5.237 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.226 0.774 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -4.040 -8.561 24.849 26.591 hybrid contribution 0.685 0.491 -0.129 0.853 sum -3.355 -8.070 24.719 26.219 Atomic orbital electron populations 1.22032 0.94065 1.03209 1.01607 1.22087 0.96708 0.83159 1.02350 1.43830 1.56714 1.13152 1.04919 1.18643 1.42322 0.95799 0.89755 0.93629 1.26068 0.96488 1.01865 0.93824 1.69884 1.41108 1.42698 0.99724 0.85986 0.79395 0.79687 0.78722 1.15951 1.20538 1.19386 1.17723 0.81865 0.87252 0.85348 1.90607 1.52743 1.20435 1.88288 1.21922 1.07286 1.01969 0.91770 1.21537 0.92436 0.97849 0.89251 1.19542 1.10627 0.92754 0.92804 1.23264 1.04765 0.97279 0.88526 1.45737 1.47517 1.11385 1.09613 1.22450 1.05485 1.06156 0.73369 1.25886 1.03292 0.94350 0.86085 1.70534 1.18817 1.15381 1.19006 0.92545 0.94013 0.88634 0.91572 0.89091 0.90768 0.84501 0.85117 0.77444 0.89079 0.88162 0.86973 0.73891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 10.15 71.98 0.73 -4.90 16 2 C 0.08 3.44 4.47 86.38 0.39 3.82 16 3 N -0.47 -25.45 2.18 -645.63 -1.41 -26.85 16 4 C -0.34 -21.33 9.34 84.11 0.79 -20.54 16 5 H 0.05 3.33 7.88 -2.91 -0.02 3.31 16 6 C 0.02 1.25 5.22 84.95 0.44 1.69 16 7 N -0.90 -54.99 13.96 21.68 0.30 -54.69 16 8 Si 0.94 44.47 25.33 68.60 1.74 46.20 16 9 H -0.23 -9.67 6.57 99.48 0.65 -9.02 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.48 26.08 7.38 85.06 0.63 26.71 16 13 O -0.63 -39.06 15.96 -4.68 -0.07 -39.13 16 14 C -0.21 -8.92 8.35 22.42 0.19 -8.74 16 15 C 0.01 0.42 9.62 23.82 0.23 0.65 16 16 C -0.03 -0.97 6.85 40.41 0.28 -0.70 16 17 C 0.00 -0.01 11.53 83.70 0.97 0.95 16 18 N -0.46 -6.70 3.15 -550.85 -1.73 -8.43 16 19 C 0.07 0.21 11.16 127.77 1.43 1.64 16 20 C 0.19 3.42 12.55 180.09 2.26 5.68 16 21 N -0.52 -15.08 10.87 -189.04 -2.06 -17.14 16 22 H 0.06 2.06 7.80 -2.39 -0.02 2.04 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.07 2.93 3.53 -2.38 -0.01 2.92 16 26 H 0.09 3.46 6.30 -2.39 -0.02 3.44 16 27 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.14 5.44 5.80 -2.91 -0.02 5.42 16 29 H 0.13 4.90 7.45 -2.91 -0.02 4.88 16 30 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 33 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.25 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -87.00 292.72 6.14 -80.87 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.05 Total: 12.91 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 8.32 Total: 6.27 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -4.89 Total: -107.11 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.07 Total: -39.13 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.74 Total: 46.20 kcal Total: -87.00 6.14 -80.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930618642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.466 kcal (2) G-P(sol) polarization free energy of solvation -87.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds