Wall clock time and date at job start Mon Mar 30 2020 18:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 C 1.50697 * 109.47218 * 120.00800 * 2 1 3 5 5 H 1.08004 * 120.00413 * 119.99918 * 4 2 1 6 6 C 1.37876 * 119.99654 * 299.99346 * 4 2 1 7 7 N 1.31515 * 120.00403 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00116 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47091 * 59.99870 * 8 6 4 10 10 H 1.48496 * 109.47421 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46886 * 300.00130 * 8 6 4 12 12 N 1.46507 * 109.46940 * 240.00223 * 2 1 3 13 13 C 1.34773 * 119.99738 * 84.99786 * 12 2 1 14 14 O 1.21284 * 120.00359 * 5.42263 * 13 12 2 15 15 C 1.50701 * 119.99918 * 185.41483 * 13 12 2 16 16 N 1.46494 * 115.55219 * 297.38157 * 15 13 12 17 17 C 1.34949 * 126.03599 * 314.10619 * 16 15 13 18 18 C 1.35319 * 107.74378 * 180.20490 * 17 16 15 19 19 C 1.39865 * 107.92239 * 359.64662 * 18 17 16 20 20 N 1.30838 * 108.20226 * 0.35996 * 19 18 17 21 21 C 1.53004 * 117.49611 * 83.05115 * 15 13 12 22 22 C 1.53007 * 117.49616 * 151.70647 * 15 13 12 23 23 H 1.08998 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46533 * 299.99813 * 1 2 3 25 25 H 1.08997 * 109.47382 * 59.99001 * 1 2 3 26 26 H 0.96994 * 120.00229 * 180.02562 * 7 6 4 27 27 H 0.97002 * 120.00117 * 265.00810 * 12 2 1 28 28 H 1.07999 * 126.12763 * 359.95350 * 17 16 15 29 29 H 1.08002 * 126.03522 * 179.77201 * 18 17 16 30 30 H 1.08001 * 125.90243 * 180.13906 * 19 18 17 31 31 H 1.08997 * 117.49973 * 215.00079 * 21 15 13 32 32 H 1.09003 * 117.49902 * 0.02562 * 21 15 13 33 33 H 1.09002 * 117.49835 * 359.97438 * 22 15 13 34 34 H 1.09000 * 117.49423 * 145.00237 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8295 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.8075 -1.1194 4.0075 10 1 1.8271 -0.4203 5.2204 11 1 1.8280 -2.5201 4.0079 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.9533 1.1787 -2.3895 15 6 2.5316 -0.7534 -3.6152 16 7 3.8494 -1.3931 -3.5953 17 6 4.9976 -0.8324 -3.1612 18 6 5.9852 -1.7450 -3.3128 19 6 5.4198 -2.9057 -3.8506 20 7 4.1401 -2.6949 -4.0232 21 6 1.4164 -1.4570 -4.3912 22 6 2.0460 -0.1771 -4.9467 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 0.7090 1.1610 3.4844 27 1 2.2489 -1.6318 -1.1528 28 1 5.1091 0.1671 -2.7675 29 1 7.0258 -1.6028 -3.0609 30 1 5.9489 -3.8173 -4.0863 31 1 1.6632 -2.3958 -4.8870 32 1 0.4045 -1.3877 -3.9921 33 1 1.4479 0.7336 -4.9128 34 1 2.7071 -0.2739 -5.8080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:01 Heat of formation + Delta-G solvation = 70.632081 kcal Electronic energy + Delta-G solvation = -18150.505692 eV Core-core repulsion = 15279.318176 eV Total energy + Delta-G solvation = -2871.187516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18400 -39.29370 -36.50694 -34.88205 -32.47252 -31.14515 -29.72153 -29.08022 -25.35880 -24.45654 -22.65037 -21.99162 -20.73102 -20.25469 -19.29425 -18.11779 -16.53357 -15.71327 -15.48707 -14.89336 -14.72923 -14.24851 -13.96178 -13.76840 -13.33495 -12.89970 -12.62150 -12.48929 -11.82903 -11.65804 -11.27437 -11.10756 -11.02181 -10.86966 -10.83870 -10.59931 -10.37939 -10.29089 -9.51117 -9.16421 -9.14316 -8.63182 -8.45428 -8.09074 -6.18676 -4.28347 1.96330 2.17560 2.94974 3.13274 3.23001 3.27947 3.29338 3.46418 3.87968 4.30605 4.43272 4.70859 4.99835 5.03480 5.14148 5.18632 5.38266 5.53320 5.72287 5.78663 5.88016 6.02465 6.11229 6.70408 6.73194 6.83009 7.01463 7.08323 7.25940 7.42154 7.60518 7.78688 7.80152 8.04638 8.46990 8.64676 8.88311 9.38921 10.87351 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.006663 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.702543 B = 4201.203325 C = 4961.652223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.690 5.690 13 C 0.536 3.464 14 O -0.536 6.536 15 C 0.072 3.928 16 N -0.334 5.334 17 C 0.072 3.928 18 C -0.278 4.278 19 C 0.044 3.956 20 N -0.297 5.297 21 C -0.140 4.140 22 C -0.144 4.144 23 H 0.029 0.971 24 H 0.093 0.907 25 H 0.014 0.986 26 H 0.266 0.734 27 H 0.392 0.608 28 H 0.171 0.829 29 H 0.147 0.853 30 H 0.182 0.818 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -5.138 -11.907 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.336 5.336 13 C 0.317 3.683 14 O -0.413 6.413 15 C -0.017 4.017 16 N -0.116 5.116 17 C -0.074 4.074 18 C -0.307 4.307 19 C -0.143 4.143 20 N -0.118 5.118 21 C -0.177 4.177 22 C -0.182 4.182 23 H 0.048 0.952 24 H 0.112 0.888 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.225 0.775 28 H 0.189 0.811 29 H 0.165 0.835 30 H 0.199 0.801 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.347 -4.567 -12.111 13.369 hybrid contribution 1.346 -0.603 1.257 1.938 sum 4.693 -5.170 -10.854 12.906 Atomic orbital electron populations 1.22100 0.98113 0.99365 1.01044 1.18871 0.91179 0.94102 0.79683 0.93026 1.21138 1.32737 1.13351 0.90189 0.92109 1.24870 0.94693 0.94915 0.99052 1.69877 1.35679 1.22369 1.24151 0.86482 0.79250 0.79620 0.81644 1.20093 1.21015 1.20099 1.46568 1.63193 1.13943 1.09893 1.19028 0.79046 0.86920 0.83325 1.90706 1.52159 1.13547 1.84888 1.21152 0.82828 1.02772 0.94938 1.47782 1.05401 1.09890 1.48481 1.22605 0.85574 1.00209 0.98996 1.21457 1.00479 0.94587 1.14214 1.23850 0.91603 0.99396 0.99408 1.77308 1.16598 0.95198 1.22704 1.23334 0.96154 0.97886 1.00359 1.23463 1.02385 0.98659 0.93740 0.95229 0.88813 0.96717 0.92398 0.77490 0.81148 0.83493 0.80060 0.86393 0.86898 0.86265 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.63 2.61 -69.08 -0.18 6.45 16 3 H 0.05 1.49 7.51 -51.93 -0.39 1.10 16 4 C -0.54 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.69 -14.66 5.07 -54.93 -0.28 -14.93 16 13 C 0.54 10.72 6.91 -10.99 -0.08 10.64 16 14 O -0.54 -12.40 16.26 5.55 0.09 -12.31 16 15 C 0.07 1.15 2.88 -132.97 -0.38 0.77 16 16 N -0.33 -5.28 3.87 -49.73 -0.19 -5.47 16 17 C 0.07 1.09 11.11 -17.22 -0.19 0.89 16 18 C -0.28 -3.64 10.80 -40.01 -0.43 -4.07 16 19 C 0.04 0.56 12.03 -17.37 -0.21 0.35 16 20 N -0.30 -4.54 12.02 30.62 0.37 -4.17 16 21 C -0.14 -1.84 9.89 -26.69 -0.26 -2.11 16 22 C -0.14 -1.90 9.98 -26.69 -0.27 -2.17 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.39 7.85 8.54 -40.82 -0.35 7.50 16 28 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.12 1.47 7.85 -51.93 -0.41 1.06 16 32 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.12 1.58 7.94 -51.93 -0.41 1.17 16 34 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -30.17 299.59 -6.32 -36.49 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.37 Total: 9.50 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.05 Total: -5.28 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.52 Total: -48.55 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.17 -6.32 -36.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.120 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds