Wall clock time and date at job start Mon Mar 30 2020 18:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 C 1.50697 * 109.47218 * 120.00800 * 2 1 3 5 5 H 1.08004 * 120.00413 * 119.99918 * 4 2 1 6 6 C 1.37876 * 119.99654 * 299.99346 * 4 2 1 7 7 N 1.31515 * 120.00403 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00116 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47091 * 59.99870 * 8 6 4 10 10 H 1.48496 * 109.47421 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46886 * 300.00130 * 8 6 4 12 12 N 1.46507 * 109.46940 * 240.00223 * 2 1 3 13 13 C 1.34773 * 119.99738 * 84.99786 * 12 2 1 14 14 O 1.21284 * 120.00359 * 5.42263 * 13 12 2 15 15 C 1.50701 * 119.99918 * 185.41483 * 13 12 2 16 16 N 1.46494 * 115.55219 * 297.38157 * 15 13 12 17 17 C 1.34949 * 126.03599 * 314.10619 * 16 15 13 18 18 C 1.35319 * 107.74378 * 180.20490 * 17 16 15 19 19 C 1.39865 * 107.92239 * 359.64662 * 18 17 16 20 20 N 1.30838 * 108.20226 * 0.35996 * 19 18 17 21 21 C 1.53004 * 117.49611 * 83.05115 * 15 13 12 22 22 C 1.53007 * 117.49616 * 151.70647 * 15 13 12 23 23 H 1.08998 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46533 * 299.99813 * 1 2 3 25 25 H 1.08997 * 109.47382 * 59.99001 * 1 2 3 26 26 H 0.96994 * 120.00229 * 180.02562 * 7 6 4 27 27 H 0.97002 * 120.00117 * 265.00810 * 12 2 1 28 28 H 1.07999 * 126.12763 * 359.95350 * 17 16 15 29 29 H 1.08002 * 126.03522 * 179.77201 * 18 17 16 30 30 H 1.08001 * 125.90243 * 180.13906 * 19 18 17 31 31 H 1.08997 * 117.49973 * 215.00079 * 21 15 13 32 32 H 1.09003 * 117.49902 * 0.02562 * 21 15 13 33 33 H 1.09002 * 117.49835 * 359.97438 * 22 15 13 34 34 H 1.09000 * 117.49423 * 145.00237 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8295 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.8075 -1.1194 4.0075 10 1 1.8271 -0.4203 5.2204 11 1 1.8280 -2.5201 4.0079 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.9533 1.1787 -2.3895 15 6 2.5316 -0.7534 -3.6152 16 7 3.8494 -1.3931 -3.5953 17 6 4.9976 -0.8324 -3.1612 18 6 5.9852 -1.7450 -3.3128 19 6 5.4198 -2.9057 -3.8506 20 7 4.1401 -2.6949 -4.0232 21 6 1.4164 -1.4570 -4.3912 22 6 2.0460 -0.1771 -4.9467 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 0.7090 1.1610 3.4844 27 1 2.2489 -1.6318 -1.1528 28 1 5.1091 0.1671 -2.7675 29 1 7.0258 -1.6028 -3.0609 30 1 5.9489 -3.8173 -4.0863 31 1 1.6632 -2.3958 -4.8870 32 1 0.4045 -1.3877 -3.9921 33 1 1.4479 0.7336 -4.9128 34 1 2.7071 -0.2739 -5.8080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931157024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:01 Heat of formation + Delta-G solvation = 50.876234 kcal Electronic energy + Delta-G solvation = -18151.362370 eV Core-core repulsion = 15279.318176 eV Total energy + Delta-G solvation = -2872.044193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.31766 -40.81251 -37.84754 -36.72929 -34.41621 -32.25306 -30.99559 -30.78874 -27.41615 -25.86964 -23.74200 -23.37686 -22.12365 -21.63160 -20.81544 -19.51251 -18.24191 -17.35082 -17.10424 -16.48671 -16.07451 -15.51957 -15.34562 -15.23959 -14.64160 -14.47464 -14.16780 -13.77175 -13.64358 -13.13340 -12.95002 -12.81691 -12.65478 -12.35247 -12.25598 -12.24381 -12.00269 -11.69845 -11.19797 -11.01610 -10.65585 -10.35853 -9.94716 -9.54025 -8.23339 -6.41241 0.84260 0.92231 1.41862 1.43270 1.51474 1.73571 1.94883 2.06652 2.38411 2.58537 3.06928 3.30146 3.53536 3.63569 3.92464 4.15909 4.31008 4.50862 4.65661 4.69225 4.76691 4.82843 4.84230 4.99540 4.99819 5.13853 5.32098 5.46303 5.58150 5.75687 5.77354 5.96864 6.01744 6.61971 6.69611 6.74031 7.13994 7.33120 8.82650 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.006663 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.702543 B = 4201.203325 C = 4961.652223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.552 4.552 5 H 0.065 0.935 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.266 1.266 12 N -0.689 5.689 13 C 0.539 3.461 14 O -0.574 6.574 15 C 0.052 3.948 16 N -0.344 5.344 17 C 0.042 3.958 18 C -0.269 4.269 19 C 0.048 3.952 20 N -0.316 5.316 21 C -0.120 4.120 22 C -0.128 4.128 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.018 0.982 26 H 0.268 0.732 27 H 0.400 0.600 28 H 0.165 0.835 29 H 0.173 0.827 30 H 0.220 0.780 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -7.183 -12.587 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.024 0.976 4 C -0.590 4.590 5 H 0.084 0.916 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.191 1.191 12 N -0.335 5.335 13 C 0.322 3.678 14 O -0.453 6.453 15 C -0.037 4.037 16 N -0.126 5.126 17 C -0.103 4.103 18 C -0.298 4.298 19 C -0.138 4.138 20 N -0.137 5.137 21 C -0.157 4.157 22 C -0.166 4.166 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.234 0.766 28 H 0.183 0.817 29 H 0.190 0.810 30 H 0.237 0.763 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.345 -6.634 -12.817 15.072 hybrid contribution 1.099 0.050 1.430 1.804 sum 5.444 -6.584 -11.386 14.235 Atomic orbital electron populations 1.21912 0.97578 0.99719 1.00085 1.18479 0.91530 0.92041 0.81225 0.97626 1.21420 1.33021 1.13605 0.90940 0.91650 1.25731 0.94713 0.95520 1.02089 1.70012 1.36567 1.23633 1.24897 0.85431 0.78666 0.78739 0.77751 1.19689 1.20669 1.19055 1.46327 1.63594 1.14094 1.09514 1.19601 0.77561 0.86546 0.84064 1.90678 1.53492 1.15403 1.85711 1.20808 0.84471 1.04807 0.93577 1.47750 1.05045 1.10277 1.49497 1.22840 0.86361 1.00799 1.00290 1.21812 1.01240 0.93992 1.12732 1.24531 0.90946 1.00447 0.97874 1.77280 1.17975 0.94828 1.23622 1.23443 0.95347 0.98316 0.98617 1.23545 1.01880 0.98687 0.92518 0.94031 0.91048 0.96319 0.92285 0.76612 0.81739 0.81006 0.76334 0.85102 0.86339 0.86513 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.26 71.98 0.67 -6.01 16 2 C 0.27 14.00 2.61 44.24 0.12 14.12 16 3 H 0.01 0.35 7.51 -2.39 -0.02 0.34 16 4 C -0.55 -29.56 8.73 25.60 0.22 -29.34 16 5 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.76 11.32 21.45 0.24 -51.52 16 8 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 N -0.69 -29.68 5.07 -446.09 -2.26 -31.94 16 13 C 0.54 21.87 6.91 87.66 0.61 22.48 16 14 O -0.57 -27.42 16.26 -3.04 -0.05 -27.47 16 15 C 0.05 1.64 2.88 2.86 0.01 1.65 16 16 N -0.34 -10.46 3.87 -311.24 -1.20 -11.67 16 17 C 0.04 1.24 11.11 83.54 0.93 2.17 16 18 C -0.27 -6.41 10.80 21.99 0.24 -6.17 16 19 C 0.05 1.09 12.03 85.23 1.02 2.12 16 20 N -0.32 -8.94 12.02 -57.03 -0.69 -9.62 16 21 C -0.12 -2.93 9.89 30.62 0.30 -2.63 16 22 C -0.13 -3.20 9.98 30.62 0.31 -2.89 16 23 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.40 15.99 8.54 -92.71 -0.79 15.20 16 28 H 0.17 4.84 8.06 -2.91 -0.02 4.81 16 29 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 30 H 0.22 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.13 2.91 7.85 -2.39 -0.02 2.89 16 32 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.12 2.99 7.94 -2.39 -0.02 2.97 16 34 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -65.56 299.59 3.25 -62.31 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.32 Total: 28.77 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 4.87 Total: -2.96 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -3.91 Total: -104.75 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -65.56 3.25 -62.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.182 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds