Wall clock time and date at job start Mon Mar 30 2020 18:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36837 * 120.00348 * 2 1 4 4 H 1.08004 * 120.00484 * 152.32156 * 3 2 1 5 5 C 1.39054 * 119.99701 * 332.32147 * 3 2 1 6 6 N 1.31367 * 119.99838 * 55.61517 * 5 3 2 7 7 Si 1.86793 * 120.00062 * 235.61383 * 5 3 2 8 8 H 1.48499 * 109.47550 * 90.00174 * 7 5 3 9 9 H 1.48503 * 109.47355 * 210.00176 * 7 5 3 10 10 H 1.48507 * 109.47206 * 329.99816 * 7 5 3 11 11 C 1.34780 * 120.00116 * 180.02562 * 2 1 3 12 12 O 1.21671 * 120.00266 * 179.12257 * 11 2 1 13 13 C 1.47022 * 119.99875 * 358.84109 * 11 2 1 14 14 C 1.38516 * 126.89684 * 333.65789 * 13 11 2 15 15 C 1.39649 * 105.35298 * 179.97438 * 14 13 11 16 16 C 1.50697 * 126.05942 * 179.97438 * 15 14 13 17 17 C 1.52999 * 117.50287 * 343.74249 * 16 15 14 18 18 C 1.52997 * 117.49641 * 275.07993 * 16 15 14 19 19 N 1.30883 * 107.87557 * 359.97438 * 15 14 13 20 20 N 1.28444 * 110.95162 * 359.75570 * 19 15 14 21 21 C 1.46501 * 125.19129 * 180.26573 * 20 19 15 22 22 H 1.09000 * 109.46955 * 244.74970 * 1 2 3 23 23 H 1.08996 * 109.46517 * 4.74639 * 1 2 3 24 24 H 1.08997 * 109.46870 * 124.74823 * 1 2 3 25 25 H 0.96997 * 120.00140 * 180.02562 * 6 5 3 26 26 H 1.08003 * 127.32321 * 359.97438 * 14 13 11 27 27 H 1.09005 * 115.54816 * 129.41347 * 16 15 14 28 28 H 1.09003 * 117.49664 * 359.97438 * 17 16 15 29 29 H 1.08999 * 117.49978 * 145.02539 * 17 16 15 30 30 H 1.09009 * 117.50138 * 214.98241 * 18 16 15 31 31 H 1.08999 * 117.50114 * 359.97438 * 18 16 15 32 32 H 1.08992 * 109.46606 * 271.65669 * 21 20 19 33 33 H 1.08996 * 109.47089 * 31.66221 * 21 20 19 34 34 H 1.09002 * 109.46688 * 151.66307 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1366 1.2385 0.4345 5 6 1.5733 2.3203 -0.5594 6 7 0.3990 2.7351 -0.1414 7 14 2.4695 3.2558 -1.9052 8 1 2.0817 2.7093 -3.2304 9 1 2.1039 4.6934 -1.8364 10 1 3.9354 3.1083 -1.7186 11 6 2.1389 -1.1672 -0.0005 12 8 3.3555 -1.1673 -0.0167 13 6 1.4040 -2.4403 0.0247 14 6 0.1373 -2.6593 0.5406 15 6 -0.1182 -4.0160 0.3301 16 6 -1.3744 -4.7526 0.7178 17 6 -2.3071 -4.0773 1.7252 18 6 -1.4677 -5.2852 2.1491 19 7 0.9267 -4.5342 -0.2637 20 7 1.8309 -3.6437 -0.4621 21 6 3.1238 -3.8826 -1.1083 22 1 -0.3633 -0.4384 0.9295 23 1 -0.3632 1.0241 -0.0850 24 1 -0.3633 -0.5857 -0.8444 25 1 -0.0029 3.5268 -0.5318 26 1 -0.5142 -1.9349 1.0066 27 1 -1.8328 -5.3482 -0.0717 28 1 -2.0119 -3.1002 2.1078 29 1 -3.3791 -4.2288 1.5987 30 1 -1.9879 -6.2309 2.3013 31 1 -0.6204 -5.1031 2.8101 32 1 3.8532 -4.1894 -0.3588 33 1 3.0169 -4.6695 -1.8549 34 1 3.4630 -2.9665 -1.5919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931241325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:17 Heat of formation + Delta-G solvation = 96.043020 kcal Electronic energy + Delta-G solvation = -18226.414576 eV Core-core repulsion = 15356.328961 eV Total energy + Delta-G solvation = -2870.085615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94744 -38.16612 -37.01486 -34.87099 -32.68578 -32.04664 -30.15817 -26.86677 -26.39147 -24.98471 -22.87667 -22.36519 -21.63914 -20.10726 -18.35117 -17.28974 -16.34502 -15.85880 -15.52367 -15.27687 -14.59740 -14.24110 -14.10691 -13.86608 -13.56712 -12.64329 -12.42144 -12.19383 -11.98611 -11.65684 -11.60812 -11.55832 -11.36292 -10.83327 -10.66001 -10.51485 -10.43434 -10.27118 -9.79901 -8.72208 -8.58416 -8.35902 -8.32157 -7.98040 -6.97227 -3.82602 2.09684 2.94098 2.97523 3.09843 3.23358 3.30845 3.97351 3.97546 4.10120 4.56592 4.66951 4.89245 5.01876 5.09519 5.24239 5.45988 5.55798 5.68904 5.71220 5.74343 5.90207 5.92088 6.08184 6.22543 6.30544 6.36707 6.43591 6.59241 6.96389 7.07130 7.32871 7.44190 8.08031 8.33395 8.63512 8.99630 9.21676 9.88750 10.08255 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.006651 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.247839 B = 4208.629716 C = 4970.739909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.406 5.406 3 C -0.366 4.366 4 H 0.109 0.891 5 C 0.089 3.911 6 N -0.788 5.788 7 Si 0.872 3.128 8 H -0.273 1.273 9 H -0.285 1.285 10 H -0.261 1.261 11 C 0.487 3.513 12 O -0.593 6.593 13 C 0.017 3.983 14 C -0.221 4.221 15 C 0.047 3.953 16 C -0.064 4.064 17 C -0.168 4.168 18 C -0.171 4.171 19 N -0.299 5.299 20 N -0.273 5.273 21 C 0.100 3.900 22 H 0.042 0.958 23 H 0.129 0.871 24 H 0.037 0.963 25 H 0.278 0.722 26 H 0.163 0.837 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 -9.155 0.100 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.122 5.122 3 C -0.490 4.490 4 H 0.127 0.873 5 C -0.125 4.125 6 N -0.418 5.418 7 Si 0.695 3.305 8 H -0.198 1.198 9 H -0.211 1.211 10 H -0.185 1.185 11 C 0.276 3.724 12 O -0.480 6.480 13 C -0.112 4.112 14 C -0.250 4.250 15 C -0.110 4.110 16 C -0.084 4.084 17 C -0.205 4.205 18 C -0.209 4.209 19 N -0.130 5.130 20 N -0.060 5.060 21 C -0.041 4.041 22 H 0.060 0.940 23 H 0.146 0.854 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.181 0.819 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.484 -9.995 -0.410 10.963 hybrid contribution -0.056 1.165 -0.332 1.213 sum -4.540 -8.830 -0.742 9.957 Atomic orbital electron populations 1.23015 0.82117 1.07304 0.98342 1.43228 1.05247 1.04370 1.59401 1.19149 1.02525 0.85518 1.41806 0.87296 1.25361 0.94714 0.96259 0.96125 1.70159 1.19134 1.20462 1.32083 0.86825 0.82502 0.77476 0.83691 1.19823 1.21125 1.18489 1.16450 0.86556 0.81517 0.87832 1.90616 1.12792 1.86540 1.58089 1.21946 0.95803 0.89448 1.04025 1.22439 0.96596 0.96640 1.09287 1.20867 0.94322 0.92466 1.03379 1.19931 0.93339 1.02190 0.92952 1.22996 0.97002 0.97843 1.02703 1.22973 1.02747 0.97983 0.97187 1.72898 0.99326 1.19675 1.21141 1.45383 1.14016 1.04585 1.41967 1.22062 0.79794 1.04349 0.97898 0.93954 0.85362 0.94481 0.91045 0.81941 0.86932 0.88223 0.88374 0.88683 0.88829 0.90314 0.89821 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 8.66 59.85 0.52 1.30 16 2 N -0.41 -10.43 3.02 -123.58 -0.37 -10.80 16 3 C -0.37 -9.96 8.97 -15.02 -0.13 -10.09 16 4 H 0.11 3.17 7.71 -52.48 -0.40 2.76 16 5 C 0.09 2.24 4.96 -17.45 -0.09 2.15 16 6 N -0.79 -19.19 11.04 55.50 0.61 -18.58 16 7 Si 0.87 19.23 29.69 -169.99 -5.05 14.18 16 8 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 9 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 11 C 0.49 12.39 7.38 -12.70 -0.09 12.29 16 12 O -0.59 -16.41 15.24 5.21 0.08 -16.33 16 13 C 0.02 0.37 6.53 -82.06 -0.54 -0.17 16 14 C -0.22 -4.30 8.42 -38.95 -0.33 -4.63 16 15 C 0.05 0.85 6.85 -82.47 -0.57 0.28 16 16 C -0.06 -0.89 6.33 -91.77 -0.58 -1.47 16 17 C -0.17 -1.94 10.03 -26.69 -0.27 -2.21 16 18 C -0.17 -2.02 10.24 -26.69 -0.27 -2.30 16 19 N -0.30 -5.75 11.90 33.63 0.40 -5.35 16 20 N -0.27 -5.46 3.75 -63.89 -0.24 -5.70 16 21 C 0.10 1.63 10.73 59.85 0.64 2.27 16 22 H 0.04 0.85 5.56 -51.93 -0.29 0.56 16 23 H 0.13 3.00 4.58 -51.93 -0.24 2.76 16 24 H 0.04 0.77 7.50 -51.93 -0.39 0.38 16 25 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 26 H 0.16 2.93 4.60 -52.48 -0.24 2.69 16 27 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.10 1.22 7.22 -51.93 -0.37 0.84 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.80 6.99 -51.93 -0.36 1.43 16 LS Contribution 286.38 15.07 4.32 4.32 Total: -1.00 -30.23 286.38 -5.93 -36.16 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.97 Total: 4.68 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.71 Total: -2.57 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.40 Total: -40.43 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.08 Total: -16.33 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.05 Total: 14.18 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.23 -5.93 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.203 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds