Wall clock time and date at job start Mon Mar 30 2020 18:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36837 * 120.00348 * 2 1 4 4 H 1.08004 * 120.00484 * 152.32156 * 3 2 1 5 5 C 1.39054 * 119.99701 * 332.32147 * 3 2 1 6 6 N 1.31367 * 119.99838 * 55.61517 * 5 3 2 7 7 Si 1.86793 * 120.00062 * 235.61383 * 5 3 2 8 8 H 1.48499 * 109.47550 * 90.00174 * 7 5 3 9 9 H 1.48503 * 109.47355 * 210.00176 * 7 5 3 10 10 H 1.48507 * 109.47206 * 329.99816 * 7 5 3 11 11 C 1.34780 * 120.00116 * 180.02562 * 2 1 3 12 12 O 1.21671 * 120.00266 * 179.12257 * 11 2 1 13 13 C 1.47022 * 119.99875 * 358.84109 * 11 2 1 14 14 C 1.38516 * 126.89684 * 333.65789 * 13 11 2 15 15 C 1.39649 * 105.35298 * 179.97438 * 14 13 11 16 16 C 1.50697 * 126.05942 * 179.97438 * 15 14 13 17 17 C 1.52999 * 117.50287 * 343.74249 * 16 15 14 18 18 C 1.52997 * 117.49641 * 275.07993 * 16 15 14 19 19 N 1.30883 * 107.87557 * 359.97438 * 15 14 13 20 20 N 1.28444 * 110.95162 * 359.75570 * 19 15 14 21 21 C 1.46501 * 125.19129 * 180.26573 * 20 19 15 22 22 H 1.09000 * 109.46955 * 244.74970 * 1 2 3 23 23 H 1.08996 * 109.46517 * 4.74639 * 1 2 3 24 24 H 1.08997 * 109.46870 * 124.74823 * 1 2 3 25 25 H 0.96997 * 120.00140 * 180.02562 * 6 5 3 26 26 H 1.08003 * 127.32321 * 359.97438 * 14 13 11 27 27 H 1.09005 * 115.54816 * 129.41347 * 16 15 14 28 28 H 1.09003 * 117.49664 * 359.97438 * 17 16 15 29 29 H 1.08999 * 117.49978 * 145.02539 * 17 16 15 30 30 H 1.09009 * 117.50138 * 214.98241 * 18 16 15 31 31 H 1.08999 * 117.50114 * 359.97438 * 18 16 15 32 32 H 1.08992 * 109.46606 * 271.65669 * 21 20 19 33 33 H 1.08996 * 109.47089 * 31.66221 * 21 20 19 34 34 H 1.09002 * 109.46688 * 151.66307 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1366 1.2385 0.4345 5 6 1.5733 2.3203 -0.5594 6 7 0.3990 2.7351 -0.1414 7 14 2.4695 3.2558 -1.9052 8 1 2.0817 2.7093 -3.2304 9 1 2.1039 4.6934 -1.8364 10 1 3.9354 3.1083 -1.7186 11 6 2.1389 -1.1672 -0.0005 12 8 3.3555 -1.1673 -0.0167 13 6 1.4040 -2.4403 0.0247 14 6 0.1373 -2.6593 0.5406 15 6 -0.1182 -4.0160 0.3301 16 6 -1.3744 -4.7526 0.7178 17 6 -2.3071 -4.0773 1.7252 18 6 -1.4677 -5.2852 2.1491 19 7 0.9267 -4.5342 -0.2637 20 7 1.8309 -3.6437 -0.4621 21 6 3.1238 -3.8826 -1.1083 22 1 -0.3633 -0.4384 0.9295 23 1 -0.3632 1.0241 -0.0850 24 1 -0.3633 -0.5857 -0.8444 25 1 -0.0029 3.5268 -0.5318 26 1 -0.5142 -1.9349 1.0066 27 1 -1.8328 -5.3482 -0.0717 28 1 -2.0119 -3.1002 2.1078 29 1 -3.3791 -4.2288 1.5987 30 1 -1.9879 -6.2309 2.3013 31 1 -0.6204 -5.1031 2.8101 32 1 3.8532 -4.1894 -0.3588 33 1 3.0169 -4.6695 -1.8549 34 1 3.4630 -2.9665 -1.5919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931241325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:16 Heat of formation + Delta-G solvation = 77.437856 kcal Electronic energy + Delta-G solvation = -18227.221356 eV Core-core repulsion = 15356.328961 eV Total energy + Delta-G solvation = -2870.892395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.46103 -40.06174 -38.06210 -36.80973 -34.40120 -33.67315 -31.80421 -28.35002 -28.11589 -26.84170 -24.18350 -23.59487 -23.00145 -21.61252 -19.79776 -19.22639 -18.07219 -17.40143 -17.15492 -16.72424 -16.30135 -15.84893 -15.75531 -15.20121 -15.15936 -14.42783 -13.86203 -13.74545 -13.54445 -13.50457 -13.33280 -12.84072 -12.54307 -12.39319 -12.24334 -12.12999 -11.83199 -11.46714 -11.08748 -10.66023 -10.53444 -9.98636 -9.95052 -9.69123 -8.90305 -5.85186 0.44217 1.25268 1.41561 1.46862 1.58098 1.59165 2.13562 2.25012 2.68727 2.98451 3.01703 3.47810 3.80005 4.01117 4.07457 4.17764 4.27207 4.30424 4.41771 4.55387 4.63465 4.66291 4.77641 4.86766 4.95161 5.09869 5.12721 5.28638 5.36064 5.52992 5.59426 5.84214 6.06102 6.37618 6.99817 7.15131 7.27760 7.95113 8.16802 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.006651 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.247839 B = 4208.629716 C = 4970.739909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.416 5.416 3 C -0.418 4.418 4 H 0.073 0.927 5 C 0.073 3.927 6 N -0.790 5.790 7 Si 0.936 3.064 8 H -0.270 1.270 9 H -0.262 1.262 10 H -0.277 1.277 11 C 0.477 3.523 12 O -0.631 6.631 13 C -0.017 4.017 14 C -0.213 4.213 15 C 0.050 3.950 16 C -0.087 4.087 17 C -0.155 4.155 18 C -0.162 4.162 19 N -0.301 5.301 20 N -0.278 5.278 21 C 0.095 3.905 22 H 0.061 0.939 23 H 0.120 0.880 24 H 0.048 0.952 25 H 0.293 0.707 26 H 0.174 0.826 27 H 0.129 0.871 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 -9.806 -0.338 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.131 5.131 3 C -0.542 4.542 4 H 0.091 0.909 5 C -0.143 4.143 6 N -0.420 5.420 7 Si 0.758 3.242 8 H -0.196 1.196 9 H -0.187 1.187 10 H -0.201 1.201 11 C 0.267 3.733 12 O -0.522 6.522 13 C -0.145 4.145 14 C -0.241 4.241 15 C -0.107 4.107 16 C -0.106 4.106 17 C -0.193 4.193 18 C -0.200 4.200 19 N -0.133 5.133 20 N -0.064 5.064 21 C -0.044 4.044 22 H 0.079 0.921 23 H 0.137 0.863 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.191 0.809 27 H 0.147 0.853 28 H 0.109 0.891 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.671 -10.623 -0.845 12.573 hybrid contribution 0.550 1.359 -0.147 1.473 sum -6.122 -9.264 -0.992 11.148 Atomic orbital electron populations 1.22993 0.80271 1.07023 0.99762 1.43358 1.06470 1.04077 1.59204 1.18887 1.02115 0.87139 1.46032 0.90879 1.25861 0.95733 0.96485 0.96242 1.70082 1.19417 1.20843 1.31641 0.85891 0.80311 0.77503 0.80488 1.19578 1.18669 1.20143 1.16921 0.86446 0.82627 0.87289 1.90559 1.14500 1.87365 1.59747 1.21641 0.97009 0.89045 1.06851 1.22626 0.95570 0.97753 1.08195 1.21506 0.95212 0.92016 1.01961 1.20135 0.92334 1.03640 0.94536 1.23121 0.98260 0.97306 1.00584 1.23051 1.02462 0.99501 0.94950 1.72924 0.99603 1.19421 1.21337 1.45681 1.14914 1.03970 1.41876 1.22231 0.78921 1.04537 0.98759 0.92125 0.86281 0.93346 0.89505 0.80884 0.85276 0.89147 0.85493 0.85916 0.90326 0.89506 0.86418 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.85 8.66 127.77 1.11 2.95 16 2 N -0.42 -21.95 3.02 -663.10 -2.00 -23.95 16 3 C -0.42 -23.62 8.97 84.11 0.75 -22.86 16 4 H 0.07 4.55 7.71 -2.91 -0.02 4.53 16 5 C 0.07 3.64 4.96 84.96 0.42 4.06 16 6 N -0.79 -37.78 11.04 21.68 0.24 -37.54 16 7 Si 0.94 39.56 29.69 68.60 2.04 41.60 16 8 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 9 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 C 0.48 25.18 7.38 86.55 0.64 25.82 16 12 O -0.63 -36.89 15.24 -4.26 -0.06 -36.95 16 13 C -0.02 -0.74 6.53 40.76 0.27 -0.48 16 14 C -0.21 -8.12 8.42 22.68 0.19 -7.93 16 15 C 0.05 1.72 6.85 43.04 0.29 2.02 16 16 C -0.09 -2.15 6.33 -11.54 -0.07 -2.22 16 17 C -0.16 -3.07 10.03 30.62 0.31 -2.77 16 18 C -0.16 -3.32 10.24 30.62 0.31 -3.01 16 19 N -0.30 -11.22 11.90 -47.50 -0.57 -11.79 16 20 N -0.28 -11.07 3.75 -356.04 -1.34 -12.41 16 21 C 0.10 3.13 10.73 127.77 1.37 4.50 16 22 H 0.06 2.41 5.56 -2.39 -0.01 2.40 16 23 H 0.12 5.51 4.58 -2.39 -0.01 5.50 16 24 H 0.05 1.99 7.50 -2.39 -0.02 1.97 16 25 H 0.29 12.48 8.31 -92.71 -0.77 11.71 16 26 H 0.17 6.04 4.60 -2.91 -0.01 6.03 16 27 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 28 H 0.09 1.97 7.22 -2.39 -0.02 1.96 16 29 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.08 3.07 6.99 -2.39 -0.02 3.06 16 Total: -1.00 -66.63 286.38 5.03 -61.61 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 1.12 Total: 19.35 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.59 Total: 0.09 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -3.66 Total: -85.69 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.06 Total: -36.95 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.04 Total: 41.60 kcal Total: -66.63 5.03 -61.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.046 kcal (2) G-P(sol) polarization free energy of solvation -66.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds