Wall clock time and date at job start Mon Mar 30 2020 18:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28442 * 125.19118 * 2 1 4 4 C 1.30861 * 110.92541 * 180.27973 * 3 2 1 5 5 C 1.50697 * 126.07005 * 179.74825 * 4 3 2 6 6 C 1.52997 * 117.50157 * 163.70492 * 5 4 3 7 7 C 1.53005 * 117.49962 * 95.04646 * 5 4 3 8 8 C 1.39671 * 107.86153 * 359.71443 * 4 3 2 9 9 C 1.36598 * 125.18622 * 179.78953 * 2 1 3 10 10 C 1.47166 * 126.88752 * 359.97438 * 9 2 1 11 11 O 1.21625 * 119.99571 * 355.09987 * 10 9 2 12 12 N 1.34773 * 120.00156 * 175.09977 * 10 9 2 13 13 C 1.46500 * 120.00052 * 175.41870 * 12 10 9 14 14 C 1.50698 * 109.46823 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00306 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99665 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00177 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47488 * 90.00206 * 18 16 14 20 20 H 1.48507 * 109.46907 * 210.00222 * 18 16 14 21 21 H 1.48503 * 109.47082 * 329.99472 * 18 16 14 22 22 H 1.08997 * 109.47218 * 266.28440 * 1 2 3 23 23 H 1.08999 * 109.46897 * 26.28680 * 1 2 3 24 24 H 1.08997 * 109.47243 * 146.28534 * 1 2 3 25 25 H 1.09005 * 115.55129 * 309.38028 * 5 4 3 26 26 H 1.09000 * 117.49746 * 359.97438 * 6 5 4 27 27 H 1.09001 * 117.50281 * 145.02282 * 6 5 4 28 28 H 1.08997 * 117.49963 * 214.98570 * 7 5 4 29 29 H 1.09007 * 117.49547 * 359.97438 * 7 5 4 30 30 H 1.07999 * 127.32154 * 179.97438 * 8 4 3 31 31 H 0.97005 * 120.00122 * 355.42703 * 12 10 9 32 32 H 1.08994 * 109.46970 * 300.00617 * 13 12 10 33 33 H 1.08999 * 109.46459 * 60.00328 * 13 12 10 34 34 H 0.96996 * 120.00348 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4735 0.7272 -0.0060 5 6 4.6336 1.6891 -0.0132 6 6 6.0108 1.1379 0.3614 7 6 5.2605 2.0501 1.3350 8 6 3.5611 -0.6667 -0.0036 9 6 2.2522 -1.1164 0.0041 10 6 1.7992 -2.5166 0.0098 11 8 0.6135 -2.7717 0.1012 12 7 2.6982 -3.5161 -0.0863 13 6 2.2585 -4.9095 0.0201 14 6 3.4484 -5.8237 -0.1194 15 1 4.4336 -5.4083 -0.2716 16 6 3.2792 -7.1904 -0.0526 17 7 2.0794 -7.6963 0.1323 18 14 4.7542 -8.3236 -0.2247 19 1 5.3403 -8.5805 1.1153 20 1 4.3229 -9.6089 -0.8310 21 1 5.7720 -7.6825 -1.0956 22 1 -0.3633 -0.0666 1.0255 23 1 -0.3633 0.9214 -0.4551 24 1 -0.3633 -0.8548 -0.5704 25 1 4.5934 2.4684 -0.7743 26 1 6.0777 0.0796 0.6135 27 1 6.8767 1.5547 -0.1530 28 1 5.6329 3.0667 1.4608 29 1 4.8335 1.5921 2.2273 30 1 4.4594 -1.2664 -0.0075 31 1 3.6364 -3.3129 -0.2259 32 1 1.7897 -5.0693 0.9910 33 1 1.5397 -5.1249 -0.7704 34 1 1.9604 -8.6577 0.1796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:41 Heat of formation + Delta-G solvation = 58.848790 kcal Electronic energy + Delta-G solvation = -17464.281943 eV Core-core repulsion = 14592.583465 eV Total energy + Delta-G solvation = -2871.698477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.39489 -38.62114 -37.23877 -34.43042 -32.92673 -32.35175 -30.72903 -27.38081 -27.04953 -23.76022 -23.14530 -22.48567 -21.63665 -20.13027 -19.21454 -17.84333 -16.25887 -16.21520 -15.74397 -15.39466 -14.94359 -14.48220 -14.22016 -14.16226 -13.63491 -13.07335 -12.75194 -12.42435 -12.07111 -11.94799 -11.87220 -11.58209 -11.06516 -10.98698 -10.92828 -10.69573 -10.37724 -10.23903 -9.47528 -9.40389 -8.94205 -8.79396 -8.69798 -7.99941 -6.21649 -4.28933 1.56231 2.55974 2.58968 3.22366 3.28706 3.31041 3.70098 3.78075 3.90729 4.30811 4.40195 4.78338 4.85098 4.97427 5.12646 5.15058 5.27328 5.33170 5.43973 5.53809 5.58658 5.65677 5.80861 5.90560 6.04114 6.10073 6.58081 6.86629 7.18645 7.25859 7.41888 7.58271 7.89099 8.18781 8.47569 8.66506 8.90662 9.37500 10.88568 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.005143 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.432598 B = 5443.419515 C = 6523.811982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.261 5.261 3 N -0.281 5.281 4 C 0.050 3.950 5 C -0.070 4.070 6 C -0.167 4.167 7 C -0.169 4.169 8 C -0.190 4.190 9 C -0.020 4.020 10 C 0.571 3.429 11 O -0.555 6.555 12 N -0.691 5.691 13 C 0.250 3.750 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.395 0.605 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 16.595 -0.006 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.048 5.048 3 N -0.114 5.114 4 C -0.106 4.106 5 C -0.089 4.089 6 C -0.204 4.204 7 C -0.207 4.207 8 C -0.219 4.219 9 C -0.149 4.149 10 C 0.354 3.646 11 O -0.435 6.435 12 N -0.338 5.338 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.127 0.873 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.177 0.823 31 H 0.228 0.772 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.676 17.072 0.087 17.281 hybrid contribution 1.584 -1.290 -0.109 2.046 sum 4.260 15.782 -0.022 16.347 Atomic orbital electron populations 1.22270 0.72535 1.05272 1.04824 1.45508 1.07744 1.01736 1.49784 1.73010 1.03586 1.13664 1.21175 1.20911 0.90817 0.92567 1.06317 1.19978 0.89633 0.99430 0.99889 1.23022 0.93958 1.00402 1.03062 1.22995 1.03522 1.00553 0.93620 1.22032 0.95885 0.94515 1.09436 1.21816 0.91066 0.90415 1.11571 1.16991 0.86330 0.82791 0.78457 1.90744 1.16200 1.84509 1.52092 1.46254 1.10084 1.07996 1.69494 1.19220 0.96269 0.73545 0.97943 1.21195 0.93567 0.91260 1.52298 0.91715 1.24939 0.96332 0.98046 0.94572 1.69965 1.21394 1.12913 1.47980 0.86391 0.82074 0.79918 0.78410 1.20403 1.20976 1.19657 0.89841 0.89185 0.87341 0.86623 0.88121 0.88191 0.88474 0.88700 0.82328 0.77170 0.95181 0.95038 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.65 59.85 0.64 1.83 16 2 N -0.26 -4.23 3.75 -63.88 -0.24 -4.47 16 3 N -0.28 -4.46 11.90 33.64 0.40 -4.06 16 4 C 0.05 0.73 6.85 -82.47 -0.57 0.16 16 5 C -0.07 -0.77 6.33 -91.77 -0.58 -1.35 16 6 C -0.17 -1.52 10.03 -26.70 -0.27 -1.79 16 7 C -0.17 -1.61 10.24 -26.69 -0.27 -1.88 16 8 C -0.19 -2.87 9.78 -38.99 -0.38 -3.25 16 9 C -0.02 -0.34 6.96 -82.06 -0.57 -0.92 16 10 C 0.57 11.73 7.79 -12.64 -0.10 11.63 16 11 O -0.56 -12.84 14.86 5.26 0.08 -12.76 16 12 N -0.69 -14.54 5.53 -62.65 -0.35 -14.89 16 13 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 14 C -0.54 -14.45 9.28 -34.44 -0.32 -14.77 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 18 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.11 1.53 6.66 -51.93 -0.35 1.19 16 25 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.10 0.94 7.22 -51.93 -0.37 0.57 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.16 2.03 7.04 -52.49 -0.37 1.66 16 31 H 0.39 7.20 7.38 -40.82 -0.30 6.90 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -31.60 298.31 -6.75 -38.35 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.31 Total: 4.93 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.55 Total: -2.21 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.55 Total: -48.25 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.60 -6.75 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.197 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds