Wall clock time and date at job start Mon Mar 30 2020 18:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35534 * 125.67593 * 2 1 4 4 C 1.35448 * 108.87225 * 179.97438 * 3 2 1 5 5 C 1.39836 * 107.86735 * 359.97438 * 4 3 2 6 6 C 1.37647 * 125.68088 * 179.97438 * 2 1 3 7 7 C 1.46678 * 126.23229 * 359.74874 * 6 2 1 8 8 O 1.21697 * 120.00025 * 354.66121 * 7 6 2 9 9 N 1.34777 * 120.00137 * 174.65033 * 7 6 2 10 10 C 1.46496 * 120.00298 * 185.19465 * 9 7 6 11 11 C 1.53949 * 113.74034 * 253.74653 * 10 9 7 12 12 N 1.47820 * 86.03542 * 222.08152 * 11 10 9 13 13 C 1.36934 * 134.45889 * 204.64518 * 12 11 10 14 14 H 1.07993 * 119.99840 * 179.87127 * 13 12 11 15 15 C 1.38817 * 119.99860 * 359.86290 * 13 12 11 16 16 N 1.31620 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99759 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46982 * 90.00525 * 17 15 13 19 19 H 1.48503 * 109.46683 * 210.00016 * 17 15 13 20 20 H 1.48499 * 109.47302 * 330.00404 * 17 15 13 21 21 C 1.47584 * 91.04743 * 24.54817 * 12 11 10 22 22 H 1.09006 * 109.47144 * 273.99995 * 1 2 3 23 23 H 1.08999 * 109.47619 * 34.00613 * 1 2 3 24 24 H 1.09006 * 109.46887 * 154.00433 * 1 2 3 25 25 H 1.08001 * 125.56014 * 359.97438 * 3 2 1 26 26 H 1.08000 * 126.06743 * 179.97438 * 4 3 2 27 27 H 1.07990 * 126.46083 * 180.02562 * 5 4 3 28 28 H 0.97003 * 119.99452 * 5.19775 * 9 7 6 29 29 H 1.08997 * 112.94498 * 25.33636 * 10 9 7 30 30 H 1.09002 * 113.76817 * 336.34381 * 11 10 9 31 31 H 1.08993 * 113.77025 * 107.74579 * 11 10 9 32 32 H 0.96991 * 119.99982 * 179.97438 * 16 15 13 33 33 H 1.09003 * 113.76635 * 221.14747 * 21 12 11 34 34 H 1.09006 * 113.76902 * 89.75815 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5781 -0.6887 0.0015 6 6 2.2679 -1.1181 0.0005 7 6 1.8125 -2.5124 0.0063 8 8 0.6264 -2.7647 0.1094 9 7 2.7076 -3.5141 -0.1027 10 6 2.2461 -4.9002 -0.2115 11 6 2.4584 -5.7265 1.0700 12 7 2.8946 -6.8166 0.1720 13 6 2.9347 -8.1819 0.2700 14 1 3.3084 -8.7717 -0.5538 15 6 2.4950 -8.8077 1.4285 16 7 2.0391 -8.0889 2.4324 17 14 2.5502 -10.6701 1.5625 18 1 3.8576 -11.0869 2.1302 19 1 1.4543 -11.1352 2.4501 20 1 2.3828 -11.2686 0.2138 21 6 3.2672 -5.8433 -0.8730 22 1 -0.3634 0.0717 1.0252 23 1 -0.3634 0.8519 -0.5747 24 1 -0.3633 -0.9238 -0.4505 25 1 1.9080 2.1236 -0.0004 26 1 4.4132 1.3613 0.0003 27 1 4.4583 -1.3142 0.0026 28 1 3.6574 -3.3172 -0.1090 29 1 1.2410 -4.9822 -0.6250 30 1 3.2506 -5.3437 1.7133 31 1 1.5371 -5.9433 1.6106 32 1 1.7316 -8.5262 3.2417 33 1 2.9906 -6.1533 -1.8807 34 1 4.2976 -5.4950 -0.8016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030108666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:44 Heat of formation + Delta-G solvation = 73.877709 kcal Electronic energy + Delta-G solvation = -17650.835953 eV Core-core repulsion = 14779.789178 eV Total energy + Delta-G solvation = -2871.046775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31792 -39.08631 -37.33552 -33.80699 -32.69195 -31.78704 -29.36188 -27.27674 -26.51207 -24.82025 -23.70205 -21.95204 -20.55220 -19.75320 -19.19780 -17.65749 -16.77722 -15.93288 -15.55952 -15.35889 -14.90131 -14.18559 -14.04251 -13.78200 -13.41535 -13.23340 -12.67122 -12.43927 -12.31173 -12.05299 -11.84931 -11.44574 -11.43206 -10.89221 -10.77334 -10.44083 -10.04871 -9.64618 -9.52533 -8.80682 -8.77528 -8.54233 -8.15474 -6.91941 -5.76948 -3.11134 1.56747 2.69422 2.73470 3.39787 3.43981 3.47058 3.58938 3.64208 4.46283 4.77730 4.90522 4.94697 5.17475 5.18431 5.36568 5.39845 5.48272 5.57959 5.60688 5.98605 6.02342 6.15845 6.20979 6.41586 6.55414 6.71349 6.78417 6.96667 7.17675 7.24624 7.37079 7.56828 7.88351 7.96652 8.51565 9.02930 9.69324 10.55772 11.39803 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.051700 B = 0.004306 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.457420 B = 6500.935239 C = 6717.786067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.412 5.412 3 C 0.005 3.995 4 C -0.209 4.209 5 C -0.146 4.146 6 C -0.043 4.043 7 C 0.584 3.416 8 O -0.552 6.552 9 N -0.702 5.702 10 C 0.095 3.905 11 C 0.154 3.846 12 N -0.607 5.607 13 C -0.226 4.226 14 H 0.082 0.918 15 C -0.006 4.006 16 N -0.918 5.918 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.113 3.887 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.166 0.834 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.399 0.601 29 H 0.110 0.890 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.255 0.745 33 H 0.050 0.950 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 18.153 -5.585 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.085 5.085 3 C -0.130 4.130 4 C -0.233 4.233 5 C -0.172 4.172 6 C -0.157 4.157 7 C 0.371 3.629 8 O -0.432 6.432 9 N -0.351 5.351 10 C -0.010 4.010 11 C 0.028 3.972 12 N -0.334 5.334 13 C -0.354 4.354 14 H 0.100 0.900 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.014 4.014 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.124 0.876 25 H 0.183 0.817 26 H 0.158 0.842 27 H 0.161 0.839 28 H 0.233 0.767 29 H 0.128 0.872 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.129 17.583 -5.374 18.386 hybrid contribution 0.658 -0.757 0.285 1.043 sum 0.529 16.826 -5.089 17.586 Atomic orbital electron populations 1.22288 0.76188 1.05396 1.03746 1.43870 1.06832 1.05039 1.52725 1.21965 0.90786 0.91440 1.08811 1.20793 0.95903 0.95057 1.11536 1.21361 0.94564 0.95432 1.05867 1.20292 0.90439 0.87909 1.17105 1.17033 0.85920 0.83369 0.76610 1.90769 1.16508 1.84856 1.51097 1.45829 1.09317 1.06779 1.73218 1.23937 0.99520 0.76518 1.01025 1.22720 0.99066 0.83997 0.91420 1.45724 1.73408 1.00557 1.13693 1.18990 1.37018 0.79161 1.00211 0.90014 1.24821 1.01222 0.98161 0.96068 1.69831 1.47270 1.33846 1.05548 0.86091 0.77264 0.84697 0.77517 1.21558 1.21570 1.20526 1.22876 0.95402 0.88866 0.94241 0.90602 0.90291 0.87580 0.81700 0.84190 0.83851 0.76652 0.87182 0.95248 0.90457 0.93515 0.93152 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 10.63 59.85 0.64 1.32 16 2 N -0.41 -5.17 3.16 -120.23 -0.38 -5.55 16 3 C 0.01 0.05 11.38 -16.91 -0.19 -0.14 16 4 C -0.21 -2.23 10.81 -39.98 -0.43 -2.66 16 5 C -0.15 -1.79 10.36 -39.12 -0.41 -2.19 16 6 C -0.04 -0.63 6.88 -81.98 -0.56 -1.19 16 7 C 0.58 9.99 7.77 -12.85 -0.10 9.89 16 8 O -0.55 -11.09 14.32 5.19 0.07 -11.02 16 9 N -0.70 -11.45 5.36 -56.65 -0.30 -11.75 16 10 C 0.09 1.88 4.36 -70.14 -0.31 1.57 16 11 C 0.15 3.76 7.33 -2.83 -0.02 3.74 16 12 N -0.61 -15.73 3.70 -177.85 -0.66 -16.39 16 13 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 14 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -27.75 11.39 55.49 0.63 -27.12 16 17 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.11 2.27 8.69 -2.97 -0.03 2.25 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.11 1.35 6.23 -51.93 -0.32 1.02 16 25 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 26 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.14 1.46 7.45 -52.49 -0.39 1.07 16 28 H 0.40 5.39 7.62 -40.82 -0.31 5.08 16 29 H 0.11 2.34 7.57 -51.93 -0.39 1.95 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 2.14 7.16 -51.93 -0.37 1.77 16 32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -33.94 292.19 -7.22 -41.15 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.29 Total: 3.28 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.67 Total: 5.75 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.71 Total: -60.82 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.94 -7.22 -41.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030108666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.031 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds