Wall clock time and date at job start Mon Mar 30 2020 18:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35534 * 125.67593 * 2 1 4 4 C 1.35448 * 108.87225 * 179.97438 * 3 2 1 5 5 C 1.39836 * 107.86735 * 359.97438 * 4 3 2 6 6 C 1.37647 * 125.68088 * 179.97438 * 2 1 3 7 7 C 1.46678 * 126.23229 * 359.74874 * 6 2 1 8 8 O 1.21697 * 120.00025 * 354.66121 * 7 6 2 9 9 N 1.34777 * 120.00137 * 174.65033 * 7 6 2 10 10 C 1.46496 * 120.00298 * 185.19465 * 9 7 6 11 11 C 1.53949 * 113.74034 * 253.74653 * 10 9 7 12 12 N 1.47820 * 86.03542 * 222.08152 * 11 10 9 13 13 C 1.36934 * 134.45889 * 204.64518 * 12 11 10 14 14 H 1.07993 * 119.99840 * 179.87127 * 13 12 11 15 15 C 1.38817 * 119.99860 * 359.86290 * 13 12 11 16 16 N 1.31620 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99759 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46982 * 90.00525 * 17 15 13 19 19 H 1.48503 * 109.46683 * 210.00016 * 17 15 13 20 20 H 1.48499 * 109.47302 * 330.00404 * 17 15 13 21 21 C 1.47584 * 91.04743 * 24.54817 * 12 11 10 22 22 H 1.09006 * 109.47144 * 273.99995 * 1 2 3 23 23 H 1.08999 * 109.47619 * 34.00613 * 1 2 3 24 24 H 1.09006 * 109.46887 * 154.00433 * 1 2 3 25 25 H 1.08001 * 125.56014 * 359.97438 * 3 2 1 26 26 H 1.08000 * 126.06743 * 179.97438 * 4 3 2 27 27 H 1.07990 * 126.46083 * 180.02562 * 5 4 3 28 28 H 0.97003 * 119.99452 * 5.19775 * 9 7 6 29 29 H 1.08997 * 112.94498 * 25.33636 * 10 9 7 30 30 H 1.09002 * 113.76817 * 336.34381 * 11 10 9 31 31 H 1.08993 * 113.77025 * 107.74579 * 11 10 9 32 32 H 0.96991 * 119.99982 * 179.97438 * 16 15 13 33 33 H 1.09003 * 113.76635 * 221.14747 * 21 12 11 34 34 H 1.09006 * 113.76902 * 89.75815 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5781 -0.6887 0.0015 6 6 2.2679 -1.1181 0.0005 7 6 1.8125 -2.5124 0.0063 8 8 0.6264 -2.7647 0.1094 9 7 2.7076 -3.5141 -0.1027 10 6 2.2461 -4.9002 -0.2115 11 6 2.4584 -5.7265 1.0700 12 7 2.8946 -6.8166 0.1720 13 6 2.9347 -8.1819 0.2700 14 1 3.3084 -8.7717 -0.5538 15 6 2.4950 -8.8077 1.4285 16 7 2.0391 -8.0889 2.4324 17 14 2.5502 -10.6701 1.5625 18 1 3.8576 -11.0869 2.1302 19 1 1.4543 -11.1352 2.4501 20 1 2.3828 -11.2686 0.2138 21 6 3.2672 -5.8433 -0.8730 22 1 -0.3634 0.0717 1.0252 23 1 -0.3634 0.8519 -0.5747 24 1 -0.3633 -0.9238 -0.4505 25 1 1.9080 2.1236 -0.0004 26 1 4.4132 1.3613 0.0003 27 1 4.4583 -1.3142 0.0026 28 1 3.6574 -3.3172 -0.1090 29 1 1.2410 -4.9822 -0.6250 30 1 3.2506 -5.3437 1.7133 31 1 1.5371 -5.9433 1.6106 32 1 1.7316 -8.5262 3.2417 33 1 2.9906 -6.1533 -1.8807 34 1 4.2976 -5.4950 -0.8016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030108666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:44 Heat of formation + Delta-G solvation = 50.093138 kcal Electronic energy + Delta-G solvation = -17651.867329 eV Core-core repulsion = 14779.789178 eV Total energy + Delta-G solvation = -2872.078151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27127 -40.57123 -38.97093 -35.30724 -34.03838 -33.38876 -30.54311 -29.10440 -27.34721 -26.63703 -25.37558 -23.39055 -21.60325 -21.23490 -20.43641 -18.79285 -18.72244 -17.40240 -17.00260 -16.53795 -16.51379 -15.75759 -15.35949 -15.30032 -14.60328 -14.33827 -14.08711 -13.72043 -13.36018 -13.24904 -13.17995 -13.13628 -12.85524 -12.82803 -12.62723 -12.30111 -11.95540 -11.54252 -11.02001 -10.89544 -10.04982 -9.64676 -9.13235 -8.98794 -7.92606 -5.28505 0.51566 1.45526 1.48468 1.57315 1.72400 1.87738 2.36553 2.39880 2.53844 3.24353 3.38964 3.81175 3.83427 4.01902 4.23732 4.29981 4.39478 4.47982 4.54415 4.59623 4.73730 4.76540 4.89179 5.13179 5.21636 5.22774 5.32057 5.46650 5.65345 5.86389 5.89301 6.04180 6.37828 6.59283 6.86873 7.21869 7.57187 8.49895 9.24399 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.051700 B = 0.004306 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.457420 B = 6500.935239 C = 6717.786067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.422 5.422 3 C 0.023 3.977 4 C -0.220 4.220 5 C -0.136 4.136 6 C -0.090 4.090 7 C 0.581 3.419 8 O -0.593 6.593 9 N -0.692 5.692 10 C 0.124 3.876 11 C 0.152 3.848 12 N -0.638 5.638 13 C -0.236 4.236 14 H 0.092 0.908 15 C -0.069 4.069 16 N -0.957 5.957 17 Si 0.984 3.016 18 H -0.284 1.284 19 H -0.296 1.296 20 H -0.264 1.264 21 C 0.124 3.876 22 H 0.077 0.923 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.206 0.794 26 H 0.168 0.832 27 H 0.160 0.840 28 H 0.415 0.585 29 H 0.093 0.907 30 H 0.025 0.975 31 H 0.032 0.968 32 H 0.248 0.752 33 H 0.068 0.932 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 19.992 -6.886 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.095 5.095 3 C -0.112 4.112 4 C -0.243 4.243 5 C -0.163 4.163 6 C -0.202 4.202 7 C 0.371 3.629 8 O -0.475 6.475 9 N -0.342 5.342 10 C 0.018 3.982 11 C 0.025 3.975 12 N -0.365 5.365 13 C -0.365 4.365 14 H 0.110 0.890 15 C -0.262 4.262 16 N -0.606 5.606 17 Si 0.812 3.188 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.189 1.189 21 C -0.002 4.002 22 H 0.096 0.904 23 H 0.134 0.866 24 H 0.095 0.905 25 H 0.223 0.777 26 H 0.185 0.815 27 H 0.178 0.822 28 H 0.252 0.748 29 H 0.111 0.889 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.388 19.450 -6.719 20.625 hybrid contribution 0.225 -1.153 0.661 1.348 sum 1.613 18.298 -6.058 19.342 Atomic orbital electron populations 1.22342 0.75581 1.05516 1.04273 1.44123 1.07510 1.05137 1.52763 1.22730 0.90557 0.92387 1.05569 1.21208 0.97153 0.94547 1.11402 1.21730 0.94082 0.96746 1.03720 1.20004 0.91809 0.86922 1.21508 1.17483 0.85297 0.84711 0.75424 1.90749 1.18203 1.85638 1.52953 1.45524 1.10207 1.05209 1.73309 1.23201 0.98974 0.78282 0.97775 1.22593 0.96862 0.85277 0.92755 1.46050 1.74176 1.00678 1.15624 1.19469 1.35826 0.80789 1.00371 0.88989 1.25737 1.01580 1.02906 0.95971 1.70049 1.48959 1.35551 1.05996 0.84996 0.76873 0.79096 0.77854 1.21037 1.22305 1.18858 1.23018 0.96673 0.86825 0.93649 0.90425 0.86564 0.90485 0.77744 0.81457 0.82236 0.74758 0.88914 0.95718 0.94917 0.94267 0.91416 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 10.63 127.77 1.36 2.63 16 2 N -0.42 -9.84 3.16 -534.30 -1.69 -11.53 16 3 C 0.02 0.39 11.38 83.48 0.95 1.34 16 4 C -0.22 -3.88 10.81 22.01 0.24 -3.64 16 5 C -0.14 -3.00 10.36 22.57 0.23 -2.76 16 6 C -0.09 -2.51 6.88 40.35 0.28 -2.23 16 7 C 0.58 20.15 7.77 86.45 0.67 20.82 16 8 O -0.59 -24.85 14.32 -4.34 -0.06 -24.91 16 9 N -0.69 -22.40 5.36 -451.36 -2.42 -24.82 16 10 C 0.12 4.97 4.36 46.75 0.20 5.18 16 11 C 0.15 7.68 7.33 86.44 0.63 8.32 16 12 N -0.64 -33.36 3.70 -716.60 -2.65 -36.02 16 13 C -0.24 -13.44 10.70 84.04 0.90 -12.54 16 14 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 15 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 16 N -0.96 -59.97 11.39 21.65 0.25 -59.72 16 17 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 C 0.12 4.81 8.69 86.48 0.75 5.57 16 22 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 2.02 6.23 -2.38 -0.01 2.00 16 25 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 26 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 27 H 0.16 2.80 7.45 -2.92 -0.02 2.78 16 28 H 0.41 10.63 7.62 -92.71 -0.71 9.92 16 29 H 0.09 4.09 7.57 -2.39 -0.02 4.07 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 1.92 7.16 -2.39 -0.02 1.91 16 32 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.07 2.27 8.11 -2.38 -0.02 2.25 16 Total: -1.00 -76.48 292.19 2.54 -73.94 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.41 Total: 15.53 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 6.68 Total: 19.11 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -6.51 Total: -132.08 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.06 Total: -24.91 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -76.48 2.54 -73.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030108666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.033 kcal (2) G-P(sol) polarization free energy of solvation -76.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds